Wall clock time and date at job start Wed Apr 1 2020 02:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38265 * 119.99639 * 2 1 4 4 C 1.38212 * 119.99735 * 179.78966 * 3 2 1 5 5 C 1.38260 * 119.99839 * 0.44343 * 4 3 2 6 6 C 1.38208 * 120.00164 * 359.81384 * 5 4 3 7 7 C 1.38203 * 120.00241 * 180.28049 * 2 1 3 8 8 C 1.50698 * 120.00197 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.47037 * 4.63564 * 8 7 2 10 10 C 1.53000 * 109.47244 * 244.63737 * 8 7 2 11 11 C 1.52998 * 109.47320 * 124.63582 * 8 7 2 12 12 C 1.50703 * 109.47158 * 185.00615 * 11 8 7 13 13 O 1.21288 * 120.00103 * 359.97438 * 12 11 8 14 14 N 1.34773 * 120.00099 * 180.02562 * 12 11 8 15 15 C 1.46673 * 125.34040 * 179.97438 * 14 12 11 16 16 C 1.53719 * 107.94224 * 180.52089 * 15 14 12 17 17 H 1.09004 * 112.56143 * 139.72210 * 16 15 14 18 18 C 1.53694 * 109.33906 * 266.24565 * 16 15 14 19 19 N 1.47175 * 107.72970 * 128.69808 * 18 16 15 20 20 C 1.36936 * 125.25489 * 180.36887 * 19 18 16 21 21 H 1.07997 * 120.00245 * 184.21056 * 20 19 18 22 22 C 1.38819 * 119.99918 * 4.21228 * 20 19 18 23 23 N 1.31619 * 119.99922 * 354.72518 * 22 20 19 24 24 Si 1.86803 * 119.99995 * 174.73134 * 22 20 19 25 25 H 1.48497 * 109.47077 * 94.99753 * 24 22 20 26 26 H 1.48502 * 109.46846 * 214.99492 * 24 22 20 27 27 H 1.48498 * 109.46722 * 334.99290 * 24 22 20 28 28 C 1.46746 * 109.41285 * 359.65166 * 19 18 16 29 29 C 1.53928 * 106.72050 * 342.40939 * 28 19 18 30 30 H 1.08998 * 113.01159 * 150.82784 * 29 28 19 31 31 C 1.46776 * 125.33709 * 359.68520 * 14 12 11 32 32 H 1.09004 * 109.46622 * 263.70662 * 1 2 3 33 33 H 1.08997 * 109.47359 * 143.71234 * 1 2 3 34 34 H 1.09001 * 109.47094 * 23.70596 * 1 2 3 35 35 H 1.08002 * 120.00133 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.00129 * 180.27843 * 4 3 2 37 37 H 1.08006 * 119.99617 * 179.82803 * 5 4 3 38 38 H 1.08001 * 120.00248 * 179.97438 * 6 5 4 39 39 H 1.09004 * 109.47154 * 180.02562 * 10 8 7 40 40 H 1.09000 * 109.46962 * 299.99873 * 10 8 7 41 41 H 1.09004 * 109.47293 * 60.00017 * 10 8 7 42 42 H 1.09002 * 109.47088 * 305.00032 * 11 8 7 43 43 H 1.08997 * 109.47382 * 64.99948 * 11 8 7 44 44 H 1.09002 * 109.76950 * 300.13952 * 15 14 12 45 45 H 1.08992 * 109.77104 * 60.89423 * 15 14 12 46 46 H 1.08998 * 109.76280 * 247.19785 * 18 16 15 47 47 H 1.08993 * 109.76173 * 7.92172 * 18 16 15 48 48 H 0.96999 * 120.00134 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.01104 * 223.08798 * 28 19 18 50 50 H 1.09002 * 110.00246 * 101.72261 * 28 19 18 51 51 H 1.08998 * 110.02990 * 280.80020 * 31 14 12 52 52 H 1.08997 * 110.02555 * 42.21630 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1975 0.0044 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1968 -0.0059 7 6 2.1981 -1.1968 -0.0059 8 6 1.4447 -2.5020 -0.0117 9 1 0.3759 -2.3041 -0.0934 10 6 1.7254 -3.2587 1.2882 11 6 1.8993 -3.3480 -1.2026 12 6 1.0609 -4.5979 -1.2801 13 8 0.1862 -4.7931 -0.4628 14 7 1.2838 -5.4994 -2.2568 15 6 0.5416 -6.7509 -2.4417 16 6 1.1318 -7.4756 -3.6622 17 1 1.2112 -8.5522 -3.5113 18 6 0.3249 -7.1015 -4.9156 19 7 1.2775 -6.6587 -5.9464 20 6 0.9408 -6.2360 -7.2046 21 1 1.7146 -5.9937 -7.9180 22 6 -0.3951 -6.1189 -7.5631 23 7 -1.3366 -6.5119 -6.7315 24 14 -0.8567 -5.4035 -9.2259 25 1 -1.0588 -6.5059 -10.2001 26 1 -2.1120 -4.6207 -9.0967 27 1 0.2338 -4.5153 -9.7024 28 6 2.6419 -6.7247 -5.4101 29 6 2.5125 -6.7957 -3.8779 30 1 3.3350 -7.3325 -3.4053 31 6 2.3033 -5.3798 -3.3060 32 1 -0.3633 -0.1127 1.0215 33 1 -0.3634 -0.8283 -0.6082 34 1 -0.3633 0.9410 -0.4132 35 1 1.6582 2.1328 0.0004 36 1 4.1204 2.1328 0.0089 37 1 5.3518 0.0002 0.0001 38 1 4.1207 -2.1321 -0.0101 39 1 1.1808 -4.2029 1.2837 40 1 2.7942 -3.4565 1.3699 41 1 1.4015 -2.6559 2.1367 42 1 1.7817 -2.7742 -2.1219 43 1 2.9470 -3.6205 -1.0760 44 1 0.6467 -7.3763 -1.5552 45 1 -0.5118 -6.5325 -2.6164 46 1 -0.2126 -7.9759 -5.2825 47 1 -0.3827 -6.3081 -4.6752 48 1 -2.2701 -6.4304 -6.9821 49 1 3.1988 -5.8324 -5.6965 50 1 3.1467 -7.6157 -5.7835 51 1 1.9558 -4.7059 -4.0891 52 1 3.2354 -5.0086 -2.8800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049096014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:07 Heat of formation + Delta-G solvation = -8.007780 kcal Electronic energy + Delta-G solvation = -30387.705156 eV Core-core repulsion = 26544.393095 eV Total energy + Delta-G solvation = -3843.312061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.36 seconds Orbital eigenvalues (eV) -41.63300 -40.67484 -39.58258 -36.62438 -35.92970 -34.11624 -33.60160 -32.13452 -31.07605 -30.71591 -28.98122 -27.71316 -27.11028 -26.99024 -24.91302 -24.11372 -22.41180 -21.82108 -21.10340 -20.70598 -20.02205 -18.85876 -18.25870 -17.47089 -17.15464 -16.83929 -16.54554 -16.00154 -15.93282 -15.68209 -15.50512 -15.01577 -14.77498 -14.70356 -14.48007 -14.13711 -14.00325 -13.91417 -13.67500 -13.55657 -13.32531 -13.22640 -13.20635 -13.06316 -12.92751 -12.77977 -12.66602 -12.58546 -12.16465 -12.14572 -11.98197 -11.89459 -11.84478 -11.62802 -11.49190 -11.41160 -11.32395 -10.80435 -10.64230 -9.64359 -9.60981 -9.43155 -8.85951 -7.85446 -5.19242 0.48361 0.53846 1.45224 1.46403 1.55533 1.61640 2.04175 2.49669 2.89311 3.29429 3.34802 3.54261 3.65984 3.76109 3.85206 3.94100 4.03886 4.06199 4.11774 4.18058 4.29826 4.30937 4.33911 4.45633 4.47135 4.54380 4.57820 4.62732 4.67615 4.75371 4.76916 4.83400 4.84250 4.86726 4.94837 4.95963 5.03741 5.07250 5.11765 5.19138 5.27125 5.28348 5.33337 5.41864 5.42568 5.50557 5.64195 5.65404 5.68159 5.78232 5.82798 6.18715 6.21421 6.56577 7.11061 7.15597 7.81094 8.43024 9.24922 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002786 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.036327 B =10046.500379 C =10893.942157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.128 4.128 5 C -0.130 4.130 6 C -0.117 4.117 7 C -0.087 4.087 8 C -0.036 4.036 9 H 0.072 0.928 10 C -0.139 4.139 11 C -0.119 4.119 12 C 0.522 3.478 13 O -0.578 6.578 14 N -0.611 5.611 15 C 0.125 3.875 16 C -0.113 4.113 17 H 0.113 0.887 18 C 0.198 3.802 19 N -0.624 5.624 20 C -0.237 4.237 21 H 0.086 0.914 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.973 3.027 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.265 1.265 28 C 0.139 3.861 29 C -0.092 4.092 30 H 0.135 0.865 31 C 0.114 3.886 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.001 0.999 47 H 0.009 0.991 48 H 0.243 0.757 49 H 0.048 0.952 50 H 0.031 0.969 51 H 0.048 0.952 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.982 10.914 16.115 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.135 4.135 7 C -0.087 4.087 8 C -0.055 4.055 9 H 0.090 0.910 10 C -0.196 4.196 11 C -0.158 4.158 12 C 0.313 3.687 13 O -0.459 6.459 14 N -0.344 5.344 15 C 0.002 3.998 16 C -0.133 4.133 17 H 0.131 0.869 18 C 0.072 3.928 19 N -0.351 5.351 20 C -0.366 4.366 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.802 3.198 25 H -0.215 1.215 26 H -0.226 1.226 27 H -0.189 1.189 28 C 0.014 3.986 29 C -0.112 4.112 30 H 0.153 0.847 31 C -0.008 4.008 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.019 0.981 47 H 0.028 0.972 48 H 0.053 0.947 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.066 0.934 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.352 10.907 16.472 23.845 hybrid contribution -1.293 0.123 -1.280 1.824 sum 12.058 11.030 15.191 22.313 Atomic orbital electron populations 1.20868 0.91246 1.02878 1.02556 1.20009 0.96460 0.93169 1.00269 1.21269 0.94941 0.97533 1.00993 1.21441 0.94199 0.99115 0.99808 1.21426 1.00988 0.92217 1.00104 1.21205 0.93137 0.99226 0.99935 1.19726 0.94264 0.93658 1.01025 1.19869 0.99606 0.91360 0.94661 0.90979 1.21845 1.01942 1.00221 0.95617 1.21728 1.01027 0.92348 1.00701 1.20893 0.84173 0.84563 0.79113 1.90634 1.35440 1.78259 1.41559 1.48416 1.36109 1.21184 1.28691 1.21640 0.95004 0.85386 0.97780 1.22993 0.96018 1.00520 0.93764 0.86905 1.20853 0.90292 0.95643 0.85968 1.44648 1.02288 1.77108 1.11051 1.19448 0.91776 1.36264 0.89075 0.89609 1.25634 0.95932 1.02552 1.01891 1.70206 0.99046 1.53559 1.37224 0.85138 0.77293 0.77983 0.79426 1.21512 1.22645 1.18943 1.21388 0.86492 0.99137 0.91582 1.22980 0.97525 0.94960 0.95711 0.84671 1.22135 0.91702 0.97727 0.89252 0.90777 0.92309 0.90558 0.84840 0.84186 0.84019 0.84624 0.92493 0.91552 0.92774 0.88868 0.86119 0.90471 0.94478 0.98095 0.97233 0.94721 0.93338 0.95092 0.93374 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.26 71.24 0.66 -1.64 16 2 C -0.10 -2.04 5.88 -19.86 -0.12 -2.15 16 3 C -0.13 -2.29 9.68 22.27 0.22 -2.07 16 4 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 5 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 6 C -0.12 -2.02 8.78 22.27 0.20 -1.83 16 7 C -0.09 -1.79 4.78 -19.87 -0.10 -1.88 16 8 C -0.04 -0.83 2.02 -11.54 -0.02 -0.85 16 9 H 0.07 1.94 5.37 -2.39 -0.01 1.92 16 10 C -0.14 -3.07 8.79 71.98 0.63 -2.44 16 11 C -0.12 -2.72 3.88 29.85 0.12 -2.60 16 12 C 0.52 16.20 7.55 87.66 0.66 16.86 16 13 O -0.58 -21.70 14.27 -3.05 -0.04 -21.75 16 14 N -0.61 -19.15 3.31 -817.07 -2.71 -21.86 16 15 C 0.13 4.27 6.23 86.59 0.54 4.81 16 16 C -0.11 -3.89 4.01 -9.49 -0.04 -3.92 16 17 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 18 C 0.20 9.55 4.77 86.48 0.41 9.96 16 19 N -0.62 -30.56 3.39 -696.51 -2.36 -32.92 16 20 C -0.24 -12.90 10.24 84.04 0.86 -12.04 16 21 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 22 C -0.07 -3.82 5.48 84.86 0.47 -3.35 16 23 N -0.95 -57.84 10.27 21.65 0.22 -57.62 16 24 Si 0.97 45.79 29.56 68.60 2.03 47.81 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 27 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 28 C 0.14 4.98 6.41 86.65 0.56 5.54 16 29 C -0.09 -2.60 4.14 -9.27 -0.04 -2.63 16 30 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 31 C 0.11 3.14 5.88 86.71 0.51 3.65 16 32 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 1.30 6.36 -2.39 -0.02 1.29 16 34 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 35 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.14 1.84 7.17 -2.91 -0.02 1.82 16 39 H 0.06 1.54 5.95 -2.38 -0.01 1.53 16 40 H 0.07 1.20 7.67 -2.39 -0.02 1.18 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.12 2.04 7.07 -2.39 -0.02 2.02 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.04 1.51 7.44 -2.39 -0.02 1.50 16 46 H 0.00 0.04 7.54 -2.39 -0.02 0.02 16 47 H 0.01 0.54 6.45 -2.39 -0.02 0.52 16 48 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.05 1.65 7.97 -2.38 -0.02 1.63 16 50 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.05 1.64 7.76 -2.39 -0.02 1.62 16 52 H 0.11 2.07 7.61 -2.39 -0.02 2.06 16 Total: -1.00 -72.44 399.73 4.00 -68.44 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.90 Total: 18.01 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.96 Total: -0.12 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -4.84 Total: -112.40 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.04 Total: -21.75 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.44 4.00 -68.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049096014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.434 kcal (2) G-P(sol) polarization free energy of solvation -72.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds