Wall clock time and date at job start Wed Apr 1 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46957 * 2 1 4 4 C 1.38235 * 120.00404 * 89.99640 * 3 2 1 5 5 C 1.38235 * 119.99854 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00280 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00068 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47358 * 359.97438 * 7 6 5 9 9 C 1.53006 * 109.46866 * 239.99787 * 7 6 5 10 10 C 1.50698 * 109.46911 * 119.99998 * 7 6 5 11 11 O 1.21273 * 120.00521 * 359.97438 * 10 7 6 12 12 N 1.34786 * 119.99672 * 179.97438 * 10 7 6 13 13 C 1.46746 * 125.32513 * 359.69023 * 12 10 7 14 14 C 1.54103 * 106.62642 * 161.58475 * 13 12 10 15 15 H 1.09001 * 113.49245 * 151.37077 * 14 13 12 16 16 C 1.53967 * 109.44894 * 278.63793 * 14 13 12 17 17 N 1.46773 * 106.62627 * 138.17775 * 16 14 13 18 18 C 1.36934 * 125.33996 * 161.51754 * 17 16 14 19 19 H 1.08000 * 120.00042 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00484 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99844 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00431 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46809 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47113 * 119.99803 * 22 20 18 25 25 H 1.48496 * 109.47225 * 240.00012 * 22 20 18 26 26 C 1.46675 * 109.32578 * 341.49006 * 17 16 14 27 27 C 1.53729 * 107.93893 * 0.53717 * 26 17 16 28 28 H 1.09001 * 113.05212 * 140.00238 * 27 26 17 29 29 C 1.46629 * 125.32733 * 179.97438 * 12 10 7 30 30 C 1.38238 * 119.99724 * 0.24846 * 6 5 4 31 31 C 1.38233 * 120.00178 * 359.49431 * 30 6 5 32 32 H 1.09001 * 109.47248 * 60.00650 * 1 2 3 33 33 H 1.09003 * 109.46670 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47477 * 300.00290 * 1 2 3 35 35 H 1.08999 * 109.47477 * 239.99710 * 2 1 3 36 36 H 1.09001 * 109.47248 * 119.99350 * 2 1 3 37 37 H 1.07993 * 119.99987 * 0.02562 * 4 3 2 38 38 H 1.08005 * 119.99911 * 179.97438 * 5 4 3 39 39 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 40 40 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 41 41 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 42 42 H 1.08992 * 110.01485 * 281.00888 * 13 12 10 43 43 H 1.08997 * 110.01128 * 42.38709 * 13 12 10 44 44 H 1.08998 * 110.02936 * 257.47526 * 16 14 13 45 45 H 1.08999 * 110.02437 * 18.88875 * 16 14 13 46 46 H 0.96992 * 120.00112 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.76759 * 240.92544 * 26 17 16 48 48 H 1.08992 * 109.77330 * 120.16516 * 26 17 16 49 49 H 1.09005 * 109.76476 * 300.43786 * 29 12 10 50 50 H 1.08997 * 109.76639 * 61.15866 * 29 12 10 51 51 H 1.07998 * 119.99929 * 179.72765 * 30 6 5 52 52 H 1.07995 * 120.00448 * 180.23030 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7228 3.3761 1.1970 6 6 2.9523 4.0280 -0.0002 7 6 3.4535 5.4492 -0.0003 8 1 3.5743 5.7920 1.0273 9 6 2.4446 6.3457 -0.7212 10 6 4.7806 5.5137 -0.7112 11 8 5.2715 4.5050 -1.1720 12 7 5.4222 6.6926 -0.8350 13 6 4.9345 7.9812 -0.3298 14 6 6.1535 8.9222 -0.2723 15 1 5.8969 9.9739 -0.3993 16 6 6.9520 8.6487 1.0154 17 7 8.3716 8.6798 0.6439 18 6 9.4152 8.8409 1.5157 19 1 9.2232 8.9578 2.5720 20 6 10.7198 8.8540 1.0419 21 7 10.9538 8.7121 -0.2456 22 14 12.1435 9.0731 2.2313 23 1 11.6172 9.2113 3.6130 24 1 13.0369 7.8892 2.1574 25 1 12.9079 10.2936 1.8689 26 6 8.4973 8.5105 -0.8077 27 6 7.0821 8.3775 -1.3931 28 1 6.9591 8.9083 -2.3372 29 6 6.7138 6.8892 -1.5006 30 6 2.7165 3.3781 -1.1973 31 6 2.2614 2.0729 -1.1973 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 2.0830 1.5634 2.1324 38 1 2.9024 3.8854 2.1323 39 1 2.8069 7.3737 -0.7209 40 1 2.3234 6.0030 -1.7488 41 1 1.4846 6.2989 -0.2070 42 1 4.1800 8.3851 -1.0047 43 1 4.5141 7.8556 0.6680 44 1 6.7428 9.4210 1.7556 45 1 6.6921 7.6683 1.4146 46 1 11.8654 8.7217 -0.5768 47 1 9.0725 7.6106 -1.0255 48 1 8.9945 9.3795 -1.2385 49 1 7.4769 6.2844 -1.0106 50 1 6.6351 6.6041 -2.5496 51 1 2.8916 3.8889 -2.1326 52 1 2.0807 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049116956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:52 Heat of formation + Delta-G solvation = 9.931824 kcal Electronic energy + Delta-G solvation = -30149.492615 eV Core-core repulsion = 26306.958474 eV Total energy + Delta-G solvation = -3842.534141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.61901 -39.51769 -38.10464 -35.17900 -35.02104 -32.94777 -32.04633 -30.96406 -30.19332 -29.64820 -28.61205 -25.88607 -25.50297 -24.86622 -23.51205 -22.83402 -22.21098 -20.71547 -20.19709 -19.39851 -19.09926 -17.13924 -16.70589 -16.35548 -15.97689 -15.54902 -15.38737 -14.75092 -14.73139 -14.47945 -14.01052 -13.89010 -13.76248 -13.54192 -13.34363 -13.23162 -13.02057 -12.92596 -12.66052 -12.41527 -12.18217 -11.90663 -11.82001 -11.75771 -11.73693 -11.51323 -11.37206 -11.30243 -10.93617 -10.87846 -10.84337 -10.80991 -10.35371 -10.10387 -10.01631 -9.90424 -9.67681 -9.54767 -8.89579 -8.63409 -8.55912 -8.33956 -6.84876 -5.73900 -3.07375 1.26836 1.41608 2.81221 3.18209 3.39008 3.44505 3.47008 3.74978 4.43197 4.47322 4.54104 4.63948 4.71017 4.76358 4.89481 4.94344 5.03619 5.08428 5.12678 5.13936 5.21852 5.31669 5.39617 5.43984 5.44082 5.51337 5.57803 5.59118 5.63588 5.66036 5.70906 5.75033 5.77336 5.88541 5.92502 5.94576 6.01178 6.05825 6.12895 6.27393 6.33415 6.37701 6.54753 6.56010 6.59454 6.61203 6.68988 6.81899 6.97404 7.53148 7.55049 7.75390 7.79505 8.24660 8.36447 9.20595 9.80989 10.44647 11.37837 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.002329 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.269732 B =12020.698661 C =12622.061535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.109 4.109 6 C -0.067 4.067 7 C -0.068 4.068 8 H 0.103 0.897 9 C -0.148 4.148 10 C 0.530 3.470 11 O -0.535 6.535 12 N -0.607 5.607 13 C 0.109 3.891 14 C -0.111 4.111 15 H 0.099 0.901 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.187 3.813 27 C -0.122 4.122 28 H 0.088 0.912 29 C 0.119 3.881 30 C -0.080 4.080 31 C -0.120 4.120 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.017 0.983 46 H 0.252 0.748 47 H 0.049 0.951 48 H 0.049 0.951 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.960 -8.487 -1.576 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.139 4.139 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.089 4.089 8 H 0.121 0.879 9 C -0.205 4.205 10 C 0.318 3.682 11 O -0.411 6.411 12 N -0.341 5.341 13 C -0.015 4.015 14 C -0.131 4.131 15 H 0.117 0.883 16 C 0.018 3.982 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.062 3.938 27 C -0.142 4.142 28 H 0.106 0.894 29 C -0.003 4.003 30 C -0.098 4.098 31 C -0.138 4.138 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.488 -9.102 -1.820 24.328 hybrid contribution 0.976 0.202 0.619 1.173 sum -21.512 -8.900 -1.202 23.311 Atomic orbital electron populations 1.21742 0.94847 1.01516 1.02173 1.20532 0.96035 0.92887 1.02770 1.19854 0.99366 0.96046 0.93272 1.20904 1.00855 0.94755 0.97398 1.20989 0.99543 0.94911 0.97230 1.19295 0.99464 0.94376 0.93610 1.20234 0.93046 0.94128 1.01468 0.87943 1.21958 0.98334 0.99558 1.00683 1.20059 0.86052 0.81903 0.80202 1.90715 1.67776 1.33635 1.49014 1.48235 1.21966 1.07155 1.56701 1.22107 0.96783 0.83739 0.98845 1.22988 0.93792 0.98587 0.97698 0.88295 1.21238 0.85763 0.97658 0.93494 1.44225 0.99701 1.85691 1.03240 1.19081 0.84560 1.42727 0.89279 0.90378 1.24810 0.97312 1.02075 0.96263 1.69958 1.19067 1.56571 1.11342 0.86032 0.82490 0.77337 0.79829 1.20518 1.21730 1.21743 1.21037 0.88124 1.01241 0.83403 1.23137 0.99447 0.93325 0.98316 0.89373 1.21961 0.84523 0.97116 0.96681 1.20865 0.96861 0.94552 0.97536 1.20946 1.00657 0.94812 0.97388 0.92591 0.92554 0.92598 0.91136 0.91152 0.86302 0.86150 0.90819 0.92020 0.91359 0.91509 0.90936 0.94700 0.96581 0.93731 0.93303 0.93333 0.90726 0.92308 0.86433 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -0.91 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 5 C -0.11 -1.26 9.67 -39.58 -0.38 -1.64 16 6 C -0.07 -0.85 4.39 -104.62 -0.46 -1.31 16 7 C -0.07 -0.81 2.29 -92.92 -0.21 -1.02 16 8 H 0.10 1.10 7.61 -51.93 -0.40 0.70 16 9 C -0.15 -1.36 8.82 37.16 0.33 -1.03 16 10 C 0.53 8.44 7.08 -10.98 -0.08 8.36 16 11 O -0.53 -10.56 15.44 5.56 0.09 -10.47 16 12 N -0.61 -9.43 3.30 -172.29 -0.57 -10.00 16 13 C 0.11 1.37 4.40 -3.33 -0.01 1.36 16 14 C -0.11 -1.72 4.16 -88.26 -0.37 -2.09 16 15 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.14 2.86 6.49 -3.39 -0.02 2.84 16 17 N -0.60 -15.04 3.38 -171.84 -0.58 -15.63 16 18 C -0.23 -6.31 10.25 -15.06 -0.15 -6.47 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -26.90 10.25 55.49 0.57 -26.33 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.19 4.39 4.77 -3.57 -0.02 4.37 16 27 C -0.12 -2.15 4.01 -88.60 -0.36 -2.51 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 29 C 0.12 2.11 6.21 -3.61 -0.02 2.09 16 30 C -0.08 -1.02 7.94 -39.58 -0.31 -1.33 16 31 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.18 7.95 -52.48 -0.42 0.77 16 39 H 0.07 0.61 4.83 -51.93 -0.25 0.36 16 40 H 0.06 0.58 7.37 -51.93 -0.38 0.20 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.68 6.63 -51.93 -0.34 0.33 16 43 H 0.07 0.81 7.43 -51.93 -0.39 0.43 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.05 1.30 6.74 -51.93 -0.35 0.95 16 48 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 49 H 0.07 1.58 7.29 -51.93 -0.38 1.20 16 50 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.12 1.49 7.52 -52.49 -0.39 1.10 16 52 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 401.75 15.07 6.05 6.05 Total: -1.00 -32.93 401.75 -11.44 -44.37 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.70 Total: -0.04 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.28 Total: -5.07 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.58 Total: -51.95 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.93 -11.44 -44.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049116956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.301 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds