Wall clock time and date at job start Wed Apr 1 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47087 * 2 1 4 4 C 1.38242 * 119.99822 * 89.99619 * 3 2 1 5 5 C 1.38239 * 119.99933 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99697 * 0.02795 * 5 4 3 7 7 C 1.50703 * 119.99655 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47245 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47227 * 120.00070 * 7 6 5 10 10 C 1.50697 * 109.46946 * 239.99873 * 7 6 5 11 11 O 1.21283 * 120.00441 * 335.14497 * 10 7 6 12 12 N 1.34781 * 120.00203 * 155.15033 * 10 7 6 13 13 C 1.46636 * 125.33021 * 176.07493 * 12 10 7 14 14 C 1.53693 * 108.00826 * 179.14202 * 13 12 10 15 15 H 1.09001 * 113.05819 * 106.19525 * 14 13 12 16 16 C 1.53722 * 109.34233 * 232.44727 * 14 13 12 17 17 N 1.46664 * 107.94775 * 93.74368 * 16 14 13 18 18 C 1.36939 * 125.34323 * 179.48664 * 17 16 14 19 19 H 1.08003 * 119.99761 * 350.23917 * 18 17 16 20 20 C 1.38806 * 120.00047 * 170.22929 * 18 17 16 21 21 N 1.31611 * 120.00524 * 350.67047 * 20 18 17 22 22 Si 1.86804 * 119.99762 * 170.66950 * 20 18 17 23 23 H 1.48505 * 109.46877 * 94.94096 * 22 20 18 24 24 H 1.48502 * 109.47289 * 214.93698 * 22 20 18 25 25 H 1.48499 * 109.47338 * 334.94109 * 22 20 18 26 26 C 1.46779 * 109.32025 * 359.45855 * 17 16 14 27 27 C 1.53966 * 106.62592 * 18.51459 * 26 17 16 28 28 H 1.09005 * 113.60911 * 94.61901 * 27 26 17 29 29 C 1.46746 * 125.32708 * 356.05163 * 12 10 7 30 30 C 1.38236 * 120.00414 * 0.25086 * 6 5 4 31 31 C 1.38229 * 120.00325 * 270.02014 * 3 2 1 32 32 H 1.08994 * 109.47038 * 300.00233 * 1 2 3 33 33 H 1.09003 * 109.46911 * 60.00070 * 1 2 3 34 34 H 1.08996 * 109.46839 * 179.97438 * 1 2 3 35 35 H 1.08990 * 109.47615 * 240.00223 * 2 1 3 36 36 H 1.09003 * 109.46911 * 119.99930 * 2 1 3 37 37 H 1.07999 * 120.00028 * 0.02562 * 4 3 2 38 38 H 1.07992 * 119.99939 * 179.97438 * 5 4 3 39 39 H 1.09005 * 109.47060 * 292.82662 * 9 7 6 40 40 H 1.08998 * 109.47341 * 52.82668 * 9 7 6 41 41 H 1.08999 * 109.47213 * 172.82965 * 9 7 6 42 42 H 1.09001 * 109.76182 * 59.50500 * 13 12 10 43 43 H 1.08999 * 109.76802 * 298.78756 * 13 12 10 44 44 H 1.09000 * 109.77310 * 213.36806 * 16 14 13 45 45 H 1.09002 * 109.77201 * 334.12486 * 16 14 13 46 46 H 0.97004 * 120.00625 * 179.97438 * 21 20 18 47 47 H 1.09000 * 110.02636 * 259.22112 * 26 17 16 48 48 H 1.09008 * 110.02443 * 137.80626 * 26 17 16 49 49 H 1.09003 * 110.01019 * 79.04307 * 29 12 10 50 50 H 1.09001 * 110.00469 * 317.67947 * 29 12 10 51 51 H 1.07998 * 120.00027 * 179.72957 * 30 6 5 52 52 H 1.08003 * 119.99844 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3756 1.1973 6 6 2.9543 4.0272 0.0001 7 6 3.4567 5.4481 0.0001 8 1 3.5773 5.7908 1.0277 9 6 4.8044 5.5126 -0.7211 10 6 2.4641 6.3318 -0.7103 11 8 1.7139 5.8584 -1.5374 12 7 2.4100 7.6483 -0.4267 13 6 1.5510 8.6265 -1.1016 14 6 1.7918 9.9984 -0.4519 15 1 2.3738 10.6723 -1.0806 16 6 0.4443 10.6043 -0.0274 17 7 0.2092 10.2454 1.3750 18 6 -0.8844 10.6112 2.1137 19 1 -1.5811 11.3383 1.7232 20 6 -1.0975 10.0474 3.3641 21 7 -0.3592 9.0337 3.7634 22 14 -2.4321 10.7277 4.4801 23 1 -3.6766 9.9371 4.3022 24 1 -1.9876 10.6393 5.8942 25 1 -2.6934 12.1472 4.1310 26 6 1.3295 9.4320 1.8626 27 6 2.5005 9.6677 0.8911 28 1 3.1888 10.4472 1.2179 29 6 3.2011 8.3270 0.6062 30 6 2.7186 3.3776 -1.1971 31 6 2.2623 2.0726 -1.1971 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5137 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.0830 1.5632 2.1325 38 1 2.9035 3.8849 2.1325 39 1 5.5543 4.9772 -0.1385 40 1 4.7124 5.0527 -1.7050 41 1 5.1070 6.5537 -0.8334 42 1 0.5054 8.3418 -0.9844 43 1 1.8044 8.6708 -2.1608 44 1 0.4791 11.6889 -0.1296 45 1 -0.3540 10.2006 -0.6502 46 1 -0.5079 8.6400 4.6374 47 1 1.0524 8.3779 1.8645 48 1 1.6094 9.7467 2.8680 49 1 4.2136 8.5049 0.2437 50 1 3.2299 7.7213 1.5119 51 1 2.8944 3.8882 -2.1323 52 1 2.0816 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049116957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:05 Heat of formation + Delta-G solvation = 5.341911 kcal Electronic energy + Delta-G solvation = -30483.217494 eV Core-core repulsion = 26640.484320 eV Total energy + Delta-G solvation = -3842.733175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -40.51454 -39.44253 -38.07104 -35.07223 -34.91603 -32.81592 -32.09273 -30.83580 -30.14188 -29.64800 -28.52320 -25.85808 -25.57282 -24.70884 -23.43285 -22.69092 -22.21510 -20.60772 -20.19593 -19.42396 -18.84807 -17.10536 -16.71511 -16.27515 -15.96824 -15.49966 -15.32751 -14.68775 -14.56061 -14.33469 -13.97821 -13.71986 -13.68277 -13.39266 -13.27726 -13.16333 -13.04494 -13.00368 -12.62767 -12.18325 -12.03148 -11.91532 -11.79446 -11.69215 -11.64718 -11.48663 -11.44678 -11.19681 -10.88383 -10.81469 -10.78963 -10.77822 -10.40238 -10.14224 -10.06404 -9.89411 -9.66930 -9.47765 -8.76430 -8.59843 -8.45567 -8.29464 -6.81192 -5.76758 -3.09230 1.36701 1.54104 2.87207 3.24344 3.38738 3.44556 3.46357 3.86048 4.48145 4.55408 4.60968 4.75994 4.80214 4.84069 4.99314 5.06734 5.10599 5.20255 5.22918 5.25038 5.30297 5.43671 5.45094 5.49561 5.54102 5.56606 5.61803 5.64588 5.71321 5.73562 5.75965 5.77742 5.88436 6.00013 6.05009 6.06127 6.12837 6.17192 6.20036 6.20722 6.32923 6.47841 6.50856 6.56227 6.67624 6.70638 6.73626 6.84848 7.09516 7.43445 7.57732 7.75767 7.80420 8.24497 8.41963 9.18807 9.80420 10.45733 11.36254 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.003090 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.520215 B = 9059.381194 C =10677.974468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.123 4.123 5 C -0.105 4.105 6 C -0.077 4.077 7 C -0.068 4.068 8 H 0.100 0.900 9 C -0.134 4.134 10 C 0.535 3.465 11 O -0.539 6.539 12 N -0.605 5.605 13 C 0.121 3.879 14 C -0.108 4.108 15 H 0.089 0.911 16 C 0.143 3.857 17 N -0.600 5.600 18 C -0.231 4.231 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.185 3.815 27 C -0.124 4.124 28 H 0.094 0.906 29 C 0.111 3.889 30 C -0.075 4.075 31 C -0.125 4.125 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.026 0.974 46 H 0.252 0.748 47 H 0.036 0.964 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.076 0.924 51 H 0.124 0.876 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.358 -11.747 -8.051 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.141 4.141 5 C -0.123 4.123 6 C -0.077 4.077 7 C -0.089 4.089 8 H 0.118 0.882 9 C -0.192 4.192 10 C 0.323 3.677 11 O -0.416 6.416 12 N -0.338 5.338 13 C -0.001 4.001 14 C -0.128 4.128 15 H 0.108 0.892 16 C 0.017 3.983 17 N -0.326 5.326 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.060 3.940 27 C -0.144 4.144 28 H 0.113 0.887 29 C -0.012 4.012 30 C -0.094 4.094 31 C -0.143 4.143 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.142 0.858 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.850 -12.127 -8.313 18.884 hybrid contribution -0.840 0.458 0.759 1.221 sum 11.010 -11.670 -7.554 17.733 Atomic orbital electron populations 1.21756 0.94756 1.01450 1.02558 1.20520 0.96208 0.92817 1.02462 1.19876 0.99091 0.96180 0.93316 1.20915 1.00868 0.94943 0.97407 1.21043 0.99064 0.94857 0.97369 1.19352 1.00856 0.93895 0.93640 1.20220 0.95120 0.92013 1.01538 0.88210 1.21713 0.94189 1.02535 1.00741 1.20021 0.84103 0.80682 0.82908 1.90677 1.42596 1.73122 1.35241 1.48167 1.41920 1.06931 1.36757 1.21836 0.95593 0.87260 0.95410 1.22741 0.98279 0.95245 0.96517 0.89244 1.21164 0.92649 0.96685 0.87775 1.44218 1.21036 1.61347 1.06028 1.19008 1.00687 1.18436 0.97808 0.90569 1.24813 0.99334 0.97418 0.98655 1.69956 1.42068 1.24112 1.20267 0.86133 0.81167 0.78438 0.80208 1.21623 1.21602 1.20584 1.21097 0.83253 0.95334 0.94322 1.23287 0.98944 0.95096 0.97067 0.88736 1.21989 0.93939 0.94300 0.91017 1.20982 0.96860 0.93632 0.97877 1.20962 1.01035 0.95013 0.97300 0.92418 0.92476 0.92588 0.91286 0.91248 0.86274 0.85979 0.91256 0.91839 0.91818 0.90896 0.92313 0.95730 0.95659 0.93744 0.94593 0.92376 0.92139 0.90579 0.85785 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.08 -0.77 6.06 -27.88 -0.17 -0.94 16 3 C -0.08 -1.01 5.13 -104.62 -0.54 -1.55 16 4 C -0.12 -1.52 9.70 -39.58 -0.38 -1.91 16 5 C -0.11 -1.40 9.67 -39.58 -0.38 -1.78 16 6 C -0.08 -1.08 4.65 -104.62 -0.49 -1.57 16 7 C -0.07 -0.89 2.43 -92.93 -0.23 -1.12 16 8 H 0.10 1.23 6.50 -51.93 -0.34 0.89 16 9 C -0.13 -1.38 9.10 37.15 0.34 -1.04 16 10 C 0.53 9.01 6.92 -10.98 -0.08 8.94 16 11 O -0.54 -10.79 14.85 5.55 0.08 -10.71 16 12 N -0.60 -9.95 3.30 -172.38 -0.57 -10.52 16 13 C 0.12 2.08 6.22 -3.61 -0.02 2.06 16 14 C -0.11 -1.78 4.02 -88.61 -0.36 -2.14 16 15 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 16 C 0.14 2.92 6.62 -3.58 -0.02 2.90 16 17 N -0.60 -15.09 3.38 -171.84 -0.58 -15.67 16 18 C -0.23 -6.42 10.21 -15.06 -0.15 -6.57 16 19 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 20 C -0.01 -0.15 5.41 -17.44 -0.09 -0.25 16 21 N -0.92 -26.68 10.61 55.49 0.59 -26.10 16 22 Si 0.91 22.05 29.56 -169.99 -5.03 17.03 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.19 4.27 4.63 -3.39 -0.02 4.26 16 27 C -0.12 -2.09 4.17 -88.35 -0.37 -2.46 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 29 C 0.11 1.60 5.67 -3.42 -0.02 1.58 16 30 C -0.08 -1.06 7.80 -39.58 -0.31 -1.36 16 31 C -0.13 -1.58 9.70 -39.58 -0.38 -1.96 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.46 7.95 -52.49 -0.42 1.04 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.66 7.18 -51.93 -0.37 0.29 16 41 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.07 1.49 7.29 -51.93 -0.38 1.11 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.03 0.53 7.44 -51.93 -0.39 0.15 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.04 0.94 7.38 -51.93 -0.38 0.56 16 48 H 0.06 1.49 7.20 -51.92 -0.37 1.11 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 1.09 6.87 -51.93 -0.36 0.74 16 51 H 0.12 1.75 6.85 -52.49 -0.36 1.39 16 52 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 405.55 15.07 6.11 6.11 Total: -1.00 -32.81 405.55 -11.52 -44.33 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.83 Total: 1.45 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.30 Total: -5.93 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.56 Total: -52.29 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.81 -11.52 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049116957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.675 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds