Wall clock time and date at job start Wed Apr 1 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46794 * 2 1 4 4 C 1.38235 * 120.00138 * 90.00430 * 3 2 1 5 5 C 1.38231 * 120.00501 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99623 * 359.97438 * 5 4 3 7 7 C 1.50709 * 120.00012 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46826 * 89.99772 * 7 6 5 9 9 C 1.50711 * 109.46707 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99788 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99782 * 180.02562 * 9 8 7 12 12 C 1.46644 * 125.32863 * 179.97438 * 11 9 8 13 13 C 1.53689 * 108.00757 * 179.18614 * 12 11 9 14 14 H 1.08994 * 112.56116 * 105.91425 * 13 12 11 15 15 C 1.53730 * 109.33840 * 232.44115 * 13 12 11 16 16 N 1.46673 * 107.94048 * 93.74990 * 15 13 12 17 17 C 1.36942 * 125.33723 * 179.46016 * 16 15 13 18 18 H 1.07994 * 119.99554 * 349.96836 * 17 16 15 19 19 C 1.38806 * 119.99892 * 169.97224 * 17 16 15 20 20 N 1.31617 * 120.00389 * 350.52318 * 19 17 16 21 21 Si 1.86799 * 119.99937 * 170.52422 * 19 17 16 22 22 H 1.48499 * 109.47253 * 94.62213 * 21 19 17 23 23 H 1.48501 * 109.47524 * 214.62270 * 21 19 17 24 24 H 1.48506 * 109.47157 * 334.62525 * 21 19 17 25 25 C 1.46775 * 109.32216 * 359.45195 * 16 15 13 26 26 C 1.53960 * 106.62981 * 18.52293 * 25 16 15 27 27 H 1.08997 * 113.61036 * 94.60959 * 26 25 16 28 28 C 1.46748 * 125.32967 * 0.02562 * 11 9 8 29 29 C 1.38236 * 120.00225 * 0.24931 * 6 5 4 30 30 C 1.38230 * 119.99897 * 359.50287 * 29 6 5 31 31 H 1.08995 * 109.47712 * 59.99965 * 1 2 3 32 32 H 1.09008 * 109.46940 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46783 * 299.99732 * 1 2 3 34 34 H 1.08999 * 109.46876 * 240.00808 * 2 1 3 35 35 H 1.08990 * 109.47272 * 120.00086 * 2 1 3 36 36 H 1.08000 * 119.99606 * 359.97438 * 4 3 2 37 37 H 1.07999 * 120.00349 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46897 * 329.99979 * 7 6 5 39 39 H 1.08998 * 109.47166 * 209.99881 * 7 6 5 40 40 H 1.09001 * 109.47728 * 60.00315 * 8 7 6 41 41 H 1.09004 * 109.47113 * 299.99597 * 8 7 6 42 42 H 1.08999 * 109.75599 * 59.54041 * 12 11 9 43 43 H 1.09001 * 109.75882 * 298.82820 * 12 11 9 44 44 H 1.08992 * 109.77259 * 213.36931 * 15 13 12 45 45 H 1.09008 * 109.77145 * 334.13223 * 15 13 12 46 46 H 0.96997 * 120.00370 * 179.97438 * 20 19 17 47 47 H 1.08998 * 110.03045 * 259.22171 * 25 16 15 48 48 H 1.09002 * 110.02140 * 137.81324 * 25 16 15 49 49 H 1.08994 * 110.00990 * 79.00911 * 28 11 9 50 50 H 1.08994 * 110.01151 * 317.63129 * 28 11 9 51 51 H 1.08007 * 119.99924 * 179.72876 * 29 6 5 52 52 H 1.08000 * 120.00422 * 180.23181 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3759 1.1972 6 6 2.9532 4.0276 0.0001 7 6 3.4544 5.4489 0.0000 8 6 4.9843 5.4501 0.0006 9 6 5.4855 6.8715 0.0013 10 8 4.6965 7.7926 0.0008 11 7 6.8103 7.1188 0.0013 12 6 7.4243 8.4505 0.0014 13 6 8.9505 8.2701 0.0222 14 1 9.4107 8.4893 -0.9412 15 6 9.5450 9.0952 1.1750 16 7 9.6627 8.2180 2.3446 17 6 10.1610 8.5881 3.5653 18 1 10.6539 9.5421 3.6805 19 6 10.0325 7.7372 4.6544 20 7 9.2747 6.6647 4.5658 21 14 10.9350 8.1141 6.2458 22 1 10.0339 8.8589 7.1615 23 1 11.3548 6.8436 6.8898 24 1 12.1338 8.9396 5.9515 25 6 9.1624 6.8815 2.0016 26 6 9.1562 6.7945 0.4645 27 1 10.0568 6.3423 0.0492 28 6 7.8642 6.0977 0.0003 29 6 2.7183 3.3776 -1.1971 30 6 2.2630 2.0724 -1.1972 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 2.0824 1.5634 2.1324 37 1 2.9025 3.8852 2.1325 38 1 3.0903 5.9626 0.8898 39 1 3.0909 5.9624 -0.8901 40 1 5.3485 4.9365 -0.8891 41 1 5.3477 4.9368 0.8909 42 1 7.1063 9.0029 0.8856 43 1 7.1295 8.9923 -0.8973 44 1 10.5297 9.4672 0.8926 45 1 8.8867 9.9326 1.4069 46 1 9.1852 6.0698 5.3267 47 1 8.1513 6.7510 2.3871 48 1 9.8215 6.1186 2.4160 49 1 7.9961 5.6988 -1.0054 50 1 7.6057 5.2941 0.6898 51 1 2.8941 3.8883 -2.1325 52 1 2.0831 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049209676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:53 Heat of formation + Delta-G solvation = -2.381552 kcal Electronic energy + Delta-G solvation = -29430.377072 eV Core-core repulsion = 25587.308983 eV Total energy + Delta-G solvation = -3843.068089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.24861 -39.64327 -38.20363 -35.28908 -34.90770 -32.70097 -32.21063 -31.04384 -30.13871 -29.89722 -28.77155 -25.94019 -25.56863 -24.62986 -23.09390 -22.85618 -22.21039 -20.53830 -20.19704 -19.42082 -18.90842 -17.17166 -16.74177 -16.26671 -16.05554 -15.72835 -15.32202 -15.07565 -14.74534 -14.51195 -13.99034 -13.92825 -13.68978 -13.58283 -13.32413 -13.27315 -13.22634 -12.91636 -12.52929 -12.36497 -12.05853 -11.94117 -11.85830 -11.65589 -11.60958 -11.58355 -11.44762 -11.12847 -10.94632 -10.87968 -10.85260 -10.81828 -10.43200 -10.14452 -10.07174 -9.90034 -9.68270 -9.58984 -9.03508 -8.61935 -8.59766 -8.30036 -6.81671 -5.77600 -3.10100 1.19068 1.29081 2.88182 3.26055 3.38189 3.44060 3.45874 3.63316 4.46921 4.48130 4.58902 4.60644 4.81563 4.86054 4.88746 4.92216 5.05824 5.06845 5.12184 5.23325 5.26241 5.27700 5.38103 5.38911 5.47124 5.49390 5.55936 5.59603 5.64468 5.68014 5.71563 5.78375 5.82327 5.84799 5.94239 6.01307 6.06023 6.14608 6.19015 6.20780 6.31001 6.32691 6.47444 6.49583 6.55401 6.56912 6.70910 6.84719 6.89767 7.42850 7.57223 7.75157 7.80944 8.23879 8.41495 9.18118 9.79678 10.45128 11.35454 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.002305 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.163549 B =12145.680815 C =13555.983601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.082 4.082 7 C -0.065 4.065 8 C -0.129 4.129 9 C 0.527 3.473 10 O -0.550 6.550 11 N -0.607 5.607 12 C 0.120 3.880 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.144 3.856 16 N -0.600 5.600 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.185 3.815 26 C -0.124 4.124 27 H 0.094 0.906 28 C 0.111 3.889 29 C -0.114 4.114 30 C -0.118 4.118 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.026 0.974 46 H 0.252 0.748 47 H 0.037 0.963 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.121 0.879 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 -11.764 -13.647 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.082 4.082 7 C -0.102 4.102 8 C -0.169 4.169 9 C 0.316 3.684 10 O -0.428 6.428 11 N -0.340 5.340 12 C -0.002 4.002 13 C -0.128 4.128 14 H 0.107 0.893 15 C 0.018 3.982 16 N -0.326 5.326 17 C -0.359 4.359 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.060 3.940 26 C -0.144 4.144 27 H 0.112 0.888 28 C -0.012 4.012 29 C -0.132 4.132 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.095 0.905 51 H 0.139 0.861 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.800 -11.367 -13.428 21.757 hybrid contribution 0.567 0.131 0.937 1.103 sum -12.233 -11.237 -12.491 20.783 Atomic orbital electron populations 1.21750 0.94830 1.01578 1.02234 1.20532 0.96100 0.92820 1.02761 1.19878 0.99644 0.96208 0.93287 1.21020 0.99952 0.94891 0.97489 1.21126 0.99100 0.94769 0.97896 1.19927 0.99030 0.96091 0.93190 1.20338 0.93402 0.92051 1.04445 1.21616 0.96497 0.94075 1.04676 1.20271 0.80530 0.91504 0.76053 1.90679 1.54419 1.46829 1.50900 1.48215 1.05086 1.08294 1.72381 1.21854 0.92195 0.84522 1.01670 1.22747 0.93931 0.96917 0.99218 0.89277 1.21152 0.97035 0.93083 0.86948 1.44219 1.74121 1.06252 1.08035 1.19007 1.29424 1.02837 0.84630 0.90558 1.24824 0.99666 0.98040 0.97776 1.69957 1.40656 1.15404 1.30414 0.86127 0.79325 0.77094 0.83356 1.21618 1.21611 1.20582 1.21086 0.98957 0.88288 0.85658 1.23287 0.95947 0.94091 1.01090 0.88770 1.21969 0.87537 0.91463 1.00246 1.21044 0.99768 0.94752 0.97621 1.20976 1.00336 0.94878 0.97381 0.92613 0.92503 0.92538 0.91169 0.91084 0.86214 0.85819 0.90096 0.90326 0.89071 0.88545 0.90909 0.92292 0.95722 0.95609 0.93735 0.94551 0.92444 0.92194 0.90497 0.86119 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.08 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.09 -0.84 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.15 9.70 -39.59 -0.38 -1.53 16 5 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 6 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 7 C -0.06 -0.78 4.64 -27.88 -0.13 -0.91 16 8 C -0.13 -1.61 4.72 -27.88 -0.13 -1.74 16 9 C 0.53 8.70 7.84 -10.98 -0.09 8.62 16 10 O -0.55 -10.85 16.29 5.55 0.09 -10.76 16 11 N -0.61 -9.96 3.30 -172.36 -0.57 -10.53 16 12 C 0.12 2.06 6.22 -3.61 -0.02 2.03 16 13 C -0.11 -1.79 4.02 -88.60 -0.36 -2.15 16 14 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.14 2.92 6.62 -3.57 -0.02 2.90 16 16 N -0.60 -15.02 3.38 -171.84 -0.58 -15.60 16 17 C -0.23 -6.38 10.21 -15.06 -0.15 -6.53 16 18 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 19 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 20 N -0.92 -26.57 10.62 55.49 0.59 -25.99 16 21 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.19 4.26 4.63 -3.39 -0.02 4.24 16 26 C -0.12 -2.11 4.17 -88.34 -0.37 -2.47 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 28 C 0.11 1.61 5.75 -3.41 -0.02 1.59 16 29 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 30 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 39 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.20 7.88 -51.93 -0.41 0.79 16 42 H 0.07 1.46 7.29 -51.93 -0.38 1.08 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.03 0.54 7.44 -51.92 -0.39 0.15 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.04 0.94 7.37 -51.93 -0.38 0.56 16 48 H 0.06 1.47 7.23 -51.93 -0.38 1.09 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.11 7.42 -51.93 -0.39 0.72 16 51 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 52 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 412.26 15.07 6.21 6.21 Total: -1.00 -32.45 412.26 -12.13 -44.58 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -9.04 Total: 0.13 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.81 Total: -4.97 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.56 Total: -52.12 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.45 -12.13 -44.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049209676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.198 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds