Wall clock time and date at job start Wed Apr 1 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46794 * 2 1 4 4 C 1.38235 * 120.00138 * 90.00430 * 3 2 1 5 5 C 1.38231 * 120.00501 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99623 * 359.97438 * 5 4 3 7 7 C 1.50709 * 120.00012 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46826 * 89.99772 * 7 6 5 9 9 C 1.50711 * 109.46707 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99788 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99782 * 180.02562 * 9 8 7 12 12 C 1.46644 * 125.32863 * 179.97438 * 11 9 8 13 13 C 1.53689 * 108.00757 * 179.18614 * 12 11 9 14 14 H 1.08994 * 112.56116 * 105.91425 * 13 12 11 15 15 C 1.53730 * 109.33840 * 232.44115 * 13 12 11 16 16 N 1.46673 * 107.94048 * 93.74990 * 15 13 12 17 17 C 1.36942 * 125.33723 * 179.46016 * 16 15 13 18 18 H 1.07994 * 119.99554 * 349.96836 * 17 16 15 19 19 C 1.38806 * 119.99892 * 169.97224 * 17 16 15 20 20 N 1.31617 * 120.00389 * 350.52318 * 19 17 16 21 21 Si 1.86799 * 119.99937 * 170.52422 * 19 17 16 22 22 H 1.48499 * 109.47253 * 94.62213 * 21 19 17 23 23 H 1.48501 * 109.47524 * 214.62270 * 21 19 17 24 24 H 1.48506 * 109.47157 * 334.62525 * 21 19 17 25 25 C 1.46775 * 109.32216 * 359.45195 * 16 15 13 26 26 C 1.53960 * 106.62981 * 18.52293 * 25 16 15 27 27 H 1.08997 * 113.61036 * 94.60959 * 26 25 16 28 28 C 1.46748 * 125.32967 * 0.02562 * 11 9 8 29 29 C 1.38236 * 120.00225 * 0.24931 * 6 5 4 30 30 C 1.38230 * 119.99897 * 359.50287 * 29 6 5 31 31 H 1.08995 * 109.47712 * 59.99965 * 1 2 3 32 32 H 1.09008 * 109.46940 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46783 * 299.99732 * 1 2 3 34 34 H 1.08999 * 109.46876 * 240.00808 * 2 1 3 35 35 H 1.08990 * 109.47272 * 120.00086 * 2 1 3 36 36 H 1.08000 * 119.99606 * 359.97438 * 4 3 2 37 37 H 1.07999 * 120.00349 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46897 * 329.99979 * 7 6 5 39 39 H 1.08998 * 109.47166 * 209.99881 * 7 6 5 40 40 H 1.09001 * 109.47728 * 60.00315 * 8 7 6 41 41 H 1.09004 * 109.47113 * 299.99597 * 8 7 6 42 42 H 1.08999 * 109.75599 * 59.54041 * 12 11 9 43 43 H 1.09001 * 109.75882 * 298.82820 * 12 11 9 44 44 H 1.08992 * 109.77259 * 213.36931 * 15 13 12 45 45 H 1.09008 * 109.77145 * 334.13223 * 15 13 12 46 46 H 0.96997 * 120.00370 * 179.97438 * 20 19 17 47 47 H 1.08998 * 110.03045 * 259.22171 * 25 16 15 48 48 H 1.09002 * 110.02140 * 137.81324 * 25 16 15 49 49 H 1.08994 * 110.00990 * 79.00911 * 28 11 9 50 50 H 1.08994 * 110.01151 * 317.63129 * 28 11 9 51 51 H 1.08007 * 119.99924 * 179.72876 * 29 6 5 52 52 H 1.08000 * 120.00422 * 180.23181 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3759 1.1972 6 6 2.9532 4.0276 0.0001 7 6 3.4544 5.4489 0.0000 8 6 4.9843 5.4501 0.0006 9 6 5.4855 6.8715 0.0013 10 8 4.6965 7.7926 0.0008 11 7 6.8103 7.1188 0.0013 12 6 7.4243 8.4505 0.0014 13 6 8.9505 8.2701 0.0222 14 1 9.4107 8.4893 -0.9412 15 6 9.5450 9.0952 1.1750 16 7 9.6627 8.2180 2.3446 17 6 10.1610 8.5881 3.5653 18 1 10.6539 9.5421 3.6805 19 6 10.0325 7.7372 4.6544 20 7 9.2747 6.6647 4.5658 21 14 10.9350 8.1141 6.2458 22 1 10.0339 8.8589 7.1615 23 1 11.3548 6.8436 6.8898 24 1 12.1338 8.9396 5.9515 25 6 9.1624 6.8815 2.0016 26 6 9.1562 6.7945 0.4645 27 1 10.0568 6.3423 0.0492 28 6 7.8642 6.0977 0.0003 29 6 2.7183 3.3776 -1.1971 30 6 2.2630 2.0724 -1.1972 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 2.0824 1.5634 2.1324 37 1 2.9025 3.8852 2.1325 38 1 3.0903 5.9626 0.8898 39 1 3.0909 5.9624 -0.8901 40 1 5.3485 4.9365 -0.8891 41 1 5.3477 4.9368 0.8909 42 1 7.1063 9.0029 0.8856 43 1 7.1295 8.9923 -0.8973 44 1 10.5297 9.4672 0.8926 45 1 8.8867 9.9326 1.4069 46 1 9.1852 6.0698 5.3267 47 1 8.1513 6.7510 2.3871 48 1 9.8215 6.1186 2.4160 49 1 7.9961 5.6988 -1.0054 50 1 7.6057 5.2941 0.6898 51 1 2.8941 3.8883 -2.1325 52 1 2.0831 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049209676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:51 Heat of formation + Delta-G solvation = -18.828420 kcal Electronic energy + Delta-G solvation = -29431.090262 eV Core-core repulsion = 25587.308983 eV Total energy + Delta-G solvation = -3843.781279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.57535 -40.47344 -39.60248 -36.61814 -36.02922 -34.19770 -33.39439 -31.78618 -31.65029 -31.45777 -29.73232 -27.45276 -27.16885 -25.79992 -24.33810 -23.60132 -23.17382 -21.94160 -21.29638 -20.85987 -20.18002 -18.85346 -18.25524 -17.45104 -16.90642 -16.82603 -16.56431 -16.39504 -16.02184 -15.78779 -15.49248 -14.92779 -14.77896 -14.61656 -14.50002 -14.22066 -14.13376 -14.04378 -13.77343 -13.60300 -13.44510 -13.41374 -13.22721 -13.03748 -12.73962 -12.71869 -12.65892 -12.37756 -12.30813 -11.99173 -11.89989 -11.88468 -11.82013 -11.65610 -11.60353 -11.57764 -11.36561 -10.95511 -10.67165 -9.79160 -9.62156 -9.38519 -8.85206 -7.90105 -5.24269 0.42233 0.53408 1.44136 1.44834 1.54821 1.59169 2.04345 2.47834 2.85410 3.27961 3.35020 3.48437 3.67300 3.84124 3.88315 3.92883 3.95137 4.06128 4.12108 4.18168 4.21996 4.30186 4.34081 4.37183 4.51123 4.53821 4.60060 4.63338 4.65719 4.66023 4.73998 4.79150 4.83080 4.90936 4.95922 4.96826 5.07232 5.08050 5.09304 5.10936 5.22485 5.26432 5.29242 5.40172 5.40551 5.46863 5.55998 5.62802 5.75454 5.76057 5.76978 6.15726 6.20309 6.53386 7.09106 7.12278 7.77915 8.40811 9.21276 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.002305 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.163549 B =12145.680815 C =13555.983601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.094 4.094 7 C -0.057 4.057 8 C -0.117 4.117 9 C 0.520 3.480 10 O -0.590 6.590 11 N -0.612 5.612 12 C 0.120 3.880 13 C -0.090 4.090 14 H 0.137 0.863 15 C 0.136 3.864 16 N -0.624 5.624 17 C -0.246 4.246 18 H 0.078 0.922 19 C -0.063 4.063 20 N -0.945 5.945 21 Si 0.976 3.024 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.194 3.806 26 C -0.113 4.113 27 H 0.125 0.875 28 C 0.115 3.885 29 C -0.117 4.117 30 C -0.121 4.121 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.013 0.987 46 H 0.247 0.753 47 H -0.005 1.005 48 H 0.023 0.977 49 H 0.109 0.891 50 H 0.074 0.926 51 H 0.137 0.863 52 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 -13.267 -16.276 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.094 4.094 7 C -0.095 4.095 8 C -0.157 4.157 9 C 0.311 3.689 10 O -0.472 6.472 11 N -0.344 5.344 12 C -0.002 4.002 13 C -0.109 4.109 14 H 0.155 0.845 15 C 0.011 3.989 16 N -0.350 5.350 17 C -0.375 4.375 18 H 0.095 0.905 19 C -0.257 4.257 20 N -0.594 5.594 21 Si 0.804 3.196 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.192 1.192 25 C 0.069 3.931 26 C -0.132 4.132 27 H 0.143 0.857 28 C -0.008 4.008 29 C -0.135 4.135 30 C -0.138 4.138 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.047 0.953 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.031 0.969 46 H 0.056 0.944 47 H 0.013 0.987 48 H 0.041 0.959 49 H 0.127 0.873 50 H 0.093 0.907 51 H 0.154 0.846 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.172 -12.866 -16.081 23.923 hybrid contribution 0.349 0.646 1.787 1.932 sum -11.824 -12.220 -14.294 22.214 Atomic orbital electron populations 1.21737 0.94338 1.02354 1.01804 1.20581 0.96435 0.91500 1.03602 1.20195 0.98789 0.97249 0.93023 1.21212 1.00018 0.94622 0.98538 1.21217 1.00012 0.95510 0.97864 1.19845 1.00224 0.95477 0.93842 1.20208 0.93145 0.92776 1.03323 1.21608 0.96665 0.91455 1.05935 1.20994 0.80247 0.92676 0.75013 1.90653 1.55397 1.48378 1.52760 1.48372 1.05594 1.08478 1.71945 1.21779 0.92905 0.85013 1.00552 1.22761 0.93115 0.95464 0.99596 0.84523 1.21360 0.97759 0.92881 0.86937 1.44573 1.73807 1.08025 1.08578 1.19383 1.29108 1.02844 0.86154 0.90452 1.25651 1.00810 0.98228 1.01017 1.70165 1.42036 1.16288 1.30877 0.85112 0.78386 0.76786 0.79323 1.21818 1.21693 1.19182 1.20840 0.95463 0.86669 0.90114 1.23206 0.98661 0.95243 0.96115 0.85738 1.22100 0.85396 0.90493 1.02771 1.21250 0.99368 0.95172 0.97671 1.21276 0.99583 0.94671 0.98314 0.92735 0.91146 0.93292 0.89940 0.90664 0.85225 0.86460 0.92320 0.90385 0.86028 0.88663 0.95269 0.90334 0.94277 0.96854 0.94376 0.98708 0.95896 0.87344 0.90724 0.84555 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.08 -1.02 6.06 29.85 0.18 -0.84 16 3 C -0.09 -1.57 5.13 -19.86 -0.10 -1.67 16 4 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 5 C -0.13 -2.83 9.70 22.27 0.22 -2.62 16 6 C -0.09 -2.03 5.13 -19.86 -0.10 -2.13 16 7 C -0.06 -1.37 4.64 29.85 0.14 -1.23 16 8 C -0.12 -2.84 4.72 29.85 0.14 -2.70 16 9 C 0.52 17.08 7.84 87.66 0.69 17.76 16 10 O -0.59 -23.91 16.29 -3.04 -0.05 -23.96 16 11 N -0.61 -19.41 3.30 -817.63 -2.70 -22.11 16 12 C 0.12 4.03 6.22 86.58 0.54 4.57 16 13 C -0.09 -2.75 4.02 -9.48 -0.04 -2.79 16 14 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 15 C 0.14 5.45 6.62 86.59 0.57 6.02 16 16 N -0.62 -31.87 3.38 -697.58 -2.36 -34.22 16 17 C -0.25 -13.92 10.21 84.03 0.86 -13.06 16 18 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 19 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 20 N -0.95 -56.98 10.62 21.65 0.23 -56.75 16 21 Si 0.98 46.14 29.56 68.60 2.03 48.17 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.19 9.15 4.63 86.65 0.40 9.55 16 26 C -0.11 -3.57 4.17 -9.32 -0.04 -3.61 16 27 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 28 C 0.11 3.02 5.75 86.65 0.50 3.52 16 29 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 30 C -0.12 -1.96 9.70 22.27 0.22 -1.75 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 35 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.06 1.65 8.04 -2.39 -0.02 1.63 16 39 H 0.08 1.87 8.04 -2.39 -0.02 1.85 16 40 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.10 2.36 7.88 -2.39 -0.02 2.34 16 42 H 0.03 1.22 7.29 -2.39 -0.02 1.20 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.01 0.57 7.44 -2.38 -0.02 0.55 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H -0.01 -0.28 7.37 -2.39 -0.02 -0.30 16 48 H 0.02 1.21 7.23 -2.39 -0.02 1.19 16 49 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.07 2.03 7.42 -2.39 -0.02 2.02 16 51 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 52 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -74.89 412.26 3.79 -71.10 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.87 Total: 16.94 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.77 Total: 0.83 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.83 Total: -113.08 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.89 3.79 -71.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049209676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.269 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds