Wall clock time and date at job start Wed Apr 1 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 119.99648 * 2 1 4 4 C 1.38217 * 119.99567 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00493 * 359.93765 * 4 3 2 6 6 C 1.38213 * 120.00014 * 0.04342 * 5 4 3 7 7 C 1.38211 * 120.00078 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00450 * 0.02562 * 7 2 1 9 9 C 1.53003 * 109.47058 * 281.52351 * 8 7 2 10 10 H 1.09004 * 109.46785 * 54.31222 * 9 8 7 11 11 C 1.53000 * 109.47077 * 294.31022 * 9 8 7 12 12 C 1.50697 * 109.47318 * 174.30968 * 9 8 7 13 13 O 1.21281 * 119.99791 * 0.02562 * 12 9 8 14 14 N 1.34775 * 120.00006 * 179.97438 * 12 9 8 15 15 C 1.46742 * 125.33093 * 359.69764 * 14 12 9 16 16 C 1.54098 * 106.63577 * 161.58015 * 15 14 12 17 17 H 1.08995 * 113.49320 * 151.36770 * 16 15 14 18 18 C 1.53963 * 109.44660 * 278.64355 * 16 15 14 19 19 N 1.46776 * 106.62813 * 138.17579 * 18 16 15 20 20 C 1.36935 * 125.34249 * 161.51359 * 19 18 16 21 21 H 1.08007 * 119.99717 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00655 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99519 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00429 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47307 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47256 * 120.00060 * 24 22 20 27 27 H 1.48504 * 109.47408 * 239.99935 * 24 22 20 28 28 C 1.46670 * 109.32296 * 341.48256 * 19 18 16 29 29 C 1.53722 * 107.94243 * 0.54259 * 28 19 18 30 30 H 1.08999 * 113.05676 * 140.00101 * 29 28 19 31 31 C 1.46639 * 125.32841 * 180.02562 * 14 12 9 32 32 H 1.08999 * 109.47078 * 271.11645 * 1 2 3 33 33 H 1.09002 * 109.47186 * 31.12479 * 1 2 3 34 34 H 1.09002 * 109.46959 * 151.11768 * 1 2 3 35 35 H 1.07991 * 120.00223 * 0.02562 * 3 2 1 36 36 H 1.08005 * 119.99700 * 179.97438 * 4 3 2 37 37 H 1.08003 * 120.00283 * 180.31826 * 5 4 3 38 38 H 1.07993 * 120.00333 * 179.97438 * 6 5 4 39 39 H 1.09003 * 109.46731 * 41.51971 * 8 7 2 40 40 H 1.08999 * 109.47837 * 161.51800 * 8 7 2 41 41 H 1.08992 * 109.47084 * 293.39354 * 11 9 8 42 42 H 1.09009 * 109.46797 * 53.39215 * 11 9 8 43 43 H 1.08999 * 109.47087 * 173.38720 * 11 9 8 44 44 H 1.09002 * 110.00549 * 281.01408 * 15 14 12 45 45 H 1.09005 * 110.00728 * 42.38190 * 15 14 12 46 46 H 1.09008 * 110.02634 * 257.46588 * 18 16 15 47 47 H 1.08995 * 110.03276 * 18.88319 * 18 16 15 48 48 H 0.97004 * 120.00084 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.77210 * 240.92298 * 28 19 18 50 50 H 1.08999 * 109.77189 * 120.16459 * 28 19 18 51 51 H 1.09003 * 109.76448 * 300.44668 * 31 14 12 52 52 H 1.09001 * 109.75924 * 61.15748 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2717 0.0001 0.0002 6 6 3.5807 -1.1969 0.0006 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5021 0.0005 9 6 0.9396 -2.7994 1.4139 10 1 0.3593 -1.9516 1.7781 11 6 2.1323 -3.0377 2.3421 12 6 0.0696 -4.0296 1.3880 13 8 -0.1268 -4.6116 0.3422 14 7 -0.4895 -4.4837 2.5272 15 6 -0.3250 -3.8776 3.8534 16 6 -1.4729 -4.4154 4.7297 17 1 -1.2235 -4.4658 5.7895 18 6 -2.7531 -3.6072 4.4501 19 7 -3.8564 -4.5737 4.3955 20 6 -5.1848 -4.2676 4.5253 21 1 -5.4902 -3.2434 4.6816 22 6 -6.1389 -5.2733 4.4559 23 7 -5.7667 -6.5214 4.2659 24 14 -7.9510 -4.8556 4.6323 25 1 -8.1043 -3.3925 4.8355 26 1 -8.6749 -5.2623 3.4010 27 1 -8.5147 -5.5797 5.7999 28 6 -3.3131 -5.9188 4.1793 29 6 -1.7819 -5.8047 4.1053 30 1 -1.2680 -6.6195 4.6153 31 6 -1.3518 -5.6647 2.6365 32 1 -0.3633 0.0200 1.0275 33 1 -0.3634 0.8797 -0.5312 34 1 -0.3633 -0.8999 -0.4964 35 1 1.6582 2.1326 0.0004 36 1 4.1203 2.1327 -0.0010 37 1 5.3517 0.0001 0.0050 38 1 4.1207 -2.1322 0.0008 39 1 0.5969 -2.4322 -0.6811 40 1 2.1072 -3.3042 -0.3248 41 1 2.6448 -3.9533 2.0473 42 1 2.8217 -2.1963 2.2710 43 1 1.7800 -3.1329 3.3692 44 1 0.6373 -4.1642 4.2777 45 1 -0.3916 -2.7922 3.7783 46 1 -2.9246 -2.8900 5.2529 47 1 -2.6653 -3.0867 3.4965 48 1 -6.4335 -7.2243 4.2171 49 1 -3.6981 -6.3261 3.2444 50 1 -3.5949 -6.5679 5.0083 51 1 -2.2316 -5.5383 2.0055 52 1 -0.8011 -6.5530 2.3271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049238069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:29 Heat of formation + Delta-G solvation = 8.132981 kcal Electronic energy + Delta-G solvation = -30557.557509 eV Core-core repulsion = 26714.945364 eV Total energy + Delta-G solvation = -3842.612145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.57643 -39.73035 -38.27970 -35.11402 -34.99914 -32.88931 -32.26121 -31.17967 -30.00702 -29.62239 -27.45260 -26.67032 -25.76474 -25.46981 -23.82243 -22.37103 -22.03047 -20.52820 -20.19903 -19.39195 -18.97036 -17.26408 -16.71734 -16.32582 -16.06274 -15.72717 -15.47679 -14.98981 -14.74897 -14.64859 -14.02730 -13.82468 -13.57015 -13.37505 -13.26782 -13.16453 -13.10071 -12.79620 -12.57261 -12.32780 -12.29586 -12.16968 -11.90718 -11.81787 -11.74216 -11.51040 -11.29088 -11.16595 -11.02035 -10.89697 -10.88778 -10.82960 -10.34991 -10.10602 -10.01497 -9.90541 -9.67854 -9.54060 -8.97030 -8.73469 -8.63044 -8.34345 -6.85133 -5.74190 -3.07659 1.15705 1.19473 2.80922 3.18845 3.38689 3.44252 3.46707 3.57777 4.40052 4.46971 4.59891 4.70579 4.75120 4.77001 4.78990 4.89215 4.89463 5.06715 5.11349 5.18302 5.26335 5.34680 5.41687 5.47236 5.48353 5.52251 5.58498 5.60696 5.66079 5.68983 5.71144 5.74125 5.76940 5.86177 5.93463 5.94176 6.03466 6.12556 6.16615 6.27411 6.30655 6.31540 6.33384 6.53311 6.55059 6.60539 6.68780 6.81748 6.83621 7.52974 7.54760 7.75825 7.79221 8.24347 8.35188 9.20296 9.80721 10.44438 11.37533 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002531 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.374337 B =11060.872580 C =11768.486956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.123 4.123 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.077 4.077 8 C -0.063 4.063 9 C -0.100 4.100 10 H 0.097 0.903 11 C -0.151 4.151 12 C 0.529 3.471 13 O -0.545 6.545 14 N -0.606 5.606 15 C 0.110 3.890 16 C -0.111 4.111 17 H 0.098 0.902 18 C 0.145 3.855 19 N -0.602 5.602 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.187 3.813 29 C -0.122 4.122 30 H 0.088 0.912 31 C 0.118 3.882 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.035 0.965 47 H 0.017 0.983 48 H 0.252 0.748 49 H 0.049 0.951 50 H 0.048 0.952 51 H 0.075 0.925 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.680 11.536 -4.381 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.141 4.141 5 C -0.145 4.145 6 C -0.130 4.130 7 C -0.077 4.077 8 C -0.100 4.100 9 C -0.121 4.121 10 H 0.115 0.885 11 C -0.209 4.209 12 C 0.318 3.682 13 O -0.423 6.423 14 N -0.339 5.339 15 C -0.014 4.014 16 C -0.131 4.131 17 H 0.117 0.883 18 C 0.019 3.981 19 N -0.328 5.328 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.062 3.938 29 C -0.142 4.142 30 H 0.106 0.894 31 C -0.004 4.004 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.381 11.134 -5.019 23.760 hybrid contribution -0.939 0.207 0.173 0.977 sum 19.442 11.341 -4.846 23.024 Atomic orbital electron populations 1.20928 0.91130 1.03236 1.02682 1.19820 0.96138 0.92583 0.99394 1.21026 0.94257 0.97442 1.01029 1.21099 0.94310 0.97972 1.00741 1.21098 0.99701 0.92564 1.01112 1.21065 0.93529 0.98108 1.00252 1.19755 0.93623 0.94462 0.99824 1.20423 1.00267 0.93769 0.95591 1.21208 0.96921 0.96461 0.97492 0.88506 1.21956 0.97020 1.02526 0.99369 1.20219 0.79998 0.85721 0.82266 1.90690 1.62068 1.59458 1.30101 1.48243 1.48998 1.29212 1.07437 1.22089 0.98359 0.97954 0.82959 1.22986 0.94985 0.96279 0.98828 0.88337 1.21236 0.86739 0.92525 0.97626 1.44225 1.01336 1.02012 1.85276 1.19079 0.80478 0.93495 1.42590 0.90393 1.24803 0.98161 0.95437 1.02020 1.69962 1.31889 0.98976 1.56107 0.86038 0.84935 0.77432 0.77309 1.20524 1.21736 1.21733 1.21034 0.84105 0.87481 1.01180 1.23136 1.01066 0.96754 0.93281 0.89401 1.21967 0.93913 0.86853 0.97631 0.90876 0.91550 0.90842 0.86205 0.86357 0.86316 0.86110 0.89680 0.90435 0.92265 0.91303 0.91355 0.91596 0.90984 0.94730 0.96570 0.93733 0.93292 0.93342 0.90701 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.83 36.00 0.32 -0.84 16 2 C -0.08 -0.79 5.84 -104.63 -0.61 -1.40 16 3 C -0.12 -1.07 9.71 -39.58 -0.38 -1.46 16 4 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 5 C -0.13 -1.05 10.05 -39.59 -0.40 -1.45 16 6 C -0.11 -1.02 8.70 -39.58 -0.34 -1.36 16 7 C -0.08 -0.78 4.40 -104.62 -0.46 -1.24 16 8 C -0.06 -0.71 3.60 -27.88 -0.10 -0.81 16 9 C -0.10 -1.14 2.02 -91.77 -0.19 -1.33 16 10 H 0.10 1.07 6.62 -51.93 -0.34 0.72 16 11 C -0.15 -1.43 8.80 37.16 0.33 -1.10 16 12 C 0.53 8.22 7.20 -10.99 -0.08 8.14 16 13 O -0.55 -10.44 16.21 5.56 0.09 -10.35 16 14 N -0.61 -9.36 3.30 -172.28 -0.57 -9.93 16 15 C 0.11 1.41 4.36 -3.34 -0.01 1.39 16 16 C -0.11 -1.73 4.16 -88.26 -0.37 -2.10 16 17 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 18 C 0.15 2.86 6.49 -3.39 -0.02 2.84 16 19 N -0.60 -14.97 3.38 -171.84 -0.58 -15.55 16 20 C -0.23 -6.28 10.25 -15.06 -0.15 -6.43 16 21 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 22 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 23 N -0.92 -26.77 10.25 55.49 0.57 -26.20 16 24 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.19 4.37 4.77 -3.57 -0.02 4.35 16 29 C -0.12 -2.15 4.01 -88.60 -0.36 -2.51 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 C 0.12 2.08 6.22 -3.61 -0.02 2.06 16 32 H 0.07 0.66 7.72 -51.93 -0.40 0.26 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.07 0.75 6.12 -51.93 -0.32 0.43 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.12 0.95 8.03 -52.49 -0.42 0.52 16 39 H 0.08 1.06 6.27 -51.93 -0.33 0.74 16 40 H 0.08 0.88 7.99 -51.93 -0.41 0.47 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.60 6.48 -51.92 -0.34 0.26 16 43 H 0.07 0.60 5.09 -51.93 -0.26 0.34 16 44 H 0.07 0.70 6.78 -51.93 -0.35 0.34 16 45 H 0.07 0.83 7.40 -51.93 -0.38 0.45 16 46 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.05 1.29 6.74 -51.93 -0.35 0.94 16 50 H 0.05 1.26 7.37 -51.93 -0.38 0.87 16 51 H 0.07 1.57 7.29 -51.93 -0.38 1.19 16 52 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -32.17 395.70 -11.34 -43.51 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.42 Total: 0.52 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.37 Total: -4.97 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.58 Total: -51.68 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.17 -11.34 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049238069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.641 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds