Wall clock time and date at job start Wed Apr 1 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38233 * 120.00514 * 2 1 4 4 C 1.38233 * 120.00537 * 180.02562 * 3 2 1 5 5 C 1.38242 * 119.99557 * 0.25141 * 4 3 2 6 6 C 1.50697 * 119.99611 * 179.72282 * 5 4 3 7 7 C 1.52999 * 109.46837 * 90.00543 * 6 5 4 8 8 H 1.08995 * 109.47157 * 305.00120 * 7 6 5 9 9 C 1.53006 * 109.47186 * 64.99941 * 7 6 5 10 10 C 1.50704 * 109.47165 * 184.99399 * 7 6 5 11 11 O 1.21278 * 120.00062 * 325.32025 * 10 7 6 12 12 N 1.34782 * 119.99805 * 145.31292 * 10 7 6 13 13 C 1.46745 * 125.32710 * 4.76304 * 12 10 7 14 14 C 1.54098 * 106.63444 * 161.58348 * 13 12 10 15 15 H 1.08997 * 113.50028 * 151.36354 * 14 13 12 16 16 C 1.53970 * 109.44374 * 278.64116 * 14 13 12 17 17 N 1.46772 * 106.62499 * 138.17463 * 16 14 13 18 18 C 1.36947 * 125.33551 * 161.51184 * 17 16 14 19 19 H 1.07998 * 119.99702 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99450 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00859 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99580 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47161 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47654 * 119.99709 * 22 20 18 25 25 H 1.48504 * 109.46872 * 240.00052 * 22 20 18 26 26 C 1.46664 * 109.32590 * 341.48130 * 17 16 14 27 27 C 1.53727 * 107.94375 * 0.54537 * 26 17 16 28 28 H 1.09002 * 113.05668 * 140.00602 * 27 26 17 29 29 C 1.46632 * 125.32665 * 185.06754 * 12 10 7 30 30 C 1.38233 * 119.99944 * 359.49490 * 5 4 3 31 31 C 1.38237 * 119.99987 * 0.48360 * 30 5 4 32 32 H 1.08999 * 109.47068 * 89.99840 * 1 2 3 33 33 H 1.09003 * 109.46888 * 210.00005 * 1 2 3 34 34 H 1.08997 * 109.46667 * 329.99843 * 1 2 3 35 35 H 1.08000 * 119.99652 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.00174 * 179.97438 * 4 3 2 37 37 H 1.09009 * 109.47195 * 210.00106 * 6 5 4 38 38 H 1.08994 * 109.47472 * 330.00148 * 6 5 4 39 39 H 1.08999 * 109.47263 * 53.76135 * 9 7 6 40 40 H 1.08999 * 109.46931 * 173.76402 * 9 7 6 41 41 H 1.09007 * 109.46805 * 293.76199 * 9 7 6 42 42 H 1.09011 * 110.00722 * 281.00697 * 13 12 10 43 43 H 1.09000 * 110.01477 * 42.37516 * 13 12 10 44 44 H 1.08997 * 110.02418 * 257.46518 * 16 14 13 45 45 H 1.08992 * 110.02543 * 18.88117 * 16 14 13 46 46 H 0.96990 * 120.00347 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.77296 * 240.91956 * 26 17 16 48 48 H 1.09004 * 109.77163 * 120.16913 * 26 17 16 49 49 H 1.08999 * 109.76218 * 300.43859 * 29 12 10 50 50 H 1.08995 * 109.76666 * 61.16201 * 29 12 10 51 51 H 1.08006 * 120.00136 * 180.25246 * 30 5 4 52 52 H 1.08006 * 119.99926 * 179.77147 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 -0.0002 -0.0063 6 6 5.7787 -0.0002 -0.0132 7 6 6.2952 -0.0035 1.4269 8 1 5.8631 0.8371 1.9698 9 6 5.8935 -1.3124 2.1099 10 6 7.7972 0.1202 1.4222 11 8 8.4456 -0.3983 0.5381 12 7 8.4198 0.8072 2.4005 13 6 7.7640 1.3945 3.5746 14 6 8.8709 1.6521 4.6153 15 1 8.6539 2.4856 5.2833 16 6 9.1830 0.3445 5.3659 17 7 10.6429 0.2758 5.5004 18 6 11.3199 -0.5132 6.3919 19 1 10.7742 -1.1529 7.0697 20 6 12.7074 -0.4906 6.4243 21 7 13.3725 0.2886 5.5980 22 14 13.6309 -1.5673 7.6398 23 1 12.6592 -2.3443 8.4505 24 1 14.5174 -2.5010 6.9000 25 1 14.4502 -0.7119 8.5357 26 6 11.2631 1.1839 4.5300 27 6 10.1383 1.8776 3.7446 28 1 10.3375 2.9324 3.5555 29 6 9.8576 1.0901 2.4549 30 6 3.5805 -1.1973 -0.0010 31 6 2.1982 -1.1972 0.0000 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3632 0.8900 0.5139 35 1 1.6583 2.1324 -0.0004 36 1 4.1206 2.1323 -0.0010 37 1 6.1397 -0.8891 -0.5307 38 1 6.1397 0.8909 -0.5267 39 1 6.2313 -2.1553 1.5070 40 1 6.3540 -1.3636 3.0965 41 1 4.8090 -1.3506 2.2126 42 1 7.2801 2.3323 3.3013 43 1 7.0285 0.6986 3.9781 44 1 8.7176 0.3596 6.3514 45 1 8.8202 -0.5097 4.7943 46 1 14.3420 0.3041 5.6204 47 1 11.8951 0.6172 3.8462 48 1 11.8617 1.9296 5.0532 49 1 10.4171 0.1547 2.4651 50 1 10.1493 1.6847 1.5892 51 1 4.1205 -2.1327 -0.0014 52 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049239585.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:32 Heat of formation + Delta-G solvation = -14.309856 kcal Electronic energy + Delta-G solvation = -29969.930598 eV Core-core repulsion = 26126.345259 eV Total energy + Delta-G solvation = -3843.585339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.71351 -40.48793 -39.64379 -36.65111 -36.24087 -34.10100 -33.11913 -31.79257 -31.67509 -31.26466 -29.22814 -27.57375 -27.11780 -26.36825 -24.88783 -23.58860 -23.09922 -21.91853 -21.45379 -20.84936 -19.99105 -18.88868 -18.31864 -17.27512 -16.78653 -16.75121 -16.46283 -16.41209 -15.93593 -15.76012 -15.50282 -14.98858 -14.77216 -14.70989 -14.42391 -14.22674 -14.18172 -13.79845 -13.63660 -13.52082 -13.36740 -13.33075 -13.21953 -13.05247 -12.90473 -12.80773 -12.77605 -12.68498 -12.11137 -12.05704 -11.98261 -11.89452 -11.87155 -11.70656 -11.63663 -11.58095 -11.43807 -10.83308 -10.69387 -9.74793 -9.64486 -9.31912 -8.89915 -7.87448 -5.22607 0.45213 0.56938 1.43476 1.44753 1.54793 1.56874 1.99204 2.47340 2.88735 3.29618 3.34969 3.46141 3.63120 3.78614 3.85673 3.92877 3.97266 4.07300 4.10292 4.20016 4.22359 4.24406 4.30101 4.39750 4.45928 4.52487 4.58191 4.66570 4.75069 4.77783 4.78983 4.82189 4.85938 4.88624 4.91493 4.95034 5.01311 5.01781 5.10689 5.14801 5.21106 5.26784 5.29734 5.36088 5.37438 5.46909 5.58460 5.60045 5.76470 5.77957 5.79510 6.19455 6.19604 6.53957 7.09546 7.11755 7.78247 8.39606 9.22851 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.002148 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.102478 B =13034.669886 C =13250.671693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.091 4.091 6 C -0.057 4.057 7 C -0.085 4.085 8 H 0.115 0.885 9 C -0.137 4.137 10 C 0.524 3.476 11 O -0.591 6.591 12 N -0.610 5.610 13 C 0.113 3.887 14 C -0.094 4.094 15 H 0.130 0.870 16 C 0.138 3.862 17 N -0.625 5.625 18 C -0.241 4.241 19 H 0.082 0.918 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.289 1.289 26 C 0.197 3.803 27 C -0.109 4.109 28 H 0.119 0.881 29 C 0.125 3.875 30 C -0.119 4.119 31 C -0.129 4.129 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.007 0.993 46 H 0.246 0.754 47 H 0.003 0.997 48 H 0.016 0.984 49 H 0.026 0.974 50 H 0.067 0.933 51 H 0.124 0.876 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.726 4.839 -9.883 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.091 4.091 6 C -0.095 4.095 7 C -0.106 4.106 8 H 0.133 0.867 9 C -0.195 4.195 10 C 0.315 3.685 11 O -0.472 6.472 12 N -0.343 5.343 13 C -0.009 4.009 14 C -0.114 4.114 15 H 0.148 0.852 16 C 0.013 3.987 17 N -0.351 5.351 18 C -0.370 4.370 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.224 1.224 25 H -0.216 1.216 26 C 0.071 3.929 27 C -0.129 4.129 28 H 0.137 0.863 29 C 0.002 3.998 30 C -0.137 4.137 31 C -0.146 4.146 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.025 0.975 46 H 0.056 0.944 47 H 0.021 0.979 48 H 0.034 0.966 49 H 0.045 0.955 50 H 0.085 0.915 51 H 0.142 0.858 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.241 4.468 -10.329 29.474 hybrid contribution 1.740 -0.911 0.477 2.021 sum -25.502 3.557 -9.852 27.569 Atomic orbital electron populations 1.20827 0.89778 1.03523 1.02861 1.20258 0.97310 0.93153 0.99214 1.21273 0.94038 0.98373 1.00701 1.21241 0.94621 0.97765 0.99986 1.19737 0.94338 0.93890 1.01132 1.20337 0.91424 1.03322 0.94394 1.21219 0.88236 1.02187 0.98934 0.86666 1.21761 1.03068 0.94736 0.99926 1.21079 0.91362 0.76292 0.79783 1.90665 1.69002 1.48508 1.38981 1.48428 1.08341 1.53899 1.23597 1.22200 0.94907 1.00094 0.83709 1.22996 0.93539 0.98483 0.96363 0.85180 1.21462 0.84278 0.95183 0.97790 1.44556 1.01499 1.48575 1.40457 1.19476 0.89529 1.16844 1.11122 0.90002 1.25661 0.97325 1.01567 1.01553 1.70185 1.06062 1.42949 1.40811 0.85018 0.78426 0.77838 0.78114 1.18890 1.22362 1.21586 1.20731 0.91451 0.91005 0.89667 1.22981 0.96497 1.00122 0.93300 0.86266 1.21671 0.81875 0.98128 0.98160 1.21210 0.94598 0.97785 1.00087 1.21257 0.93976 0.98439 1.00976 0.90652 0.90953 0.90721 0.84445 0.84952 0.91459 0.90964 0.93013 0.92563 0.89223 0.87507 0.88986 0.93592 0.97525 0.94428 0.97903 0.96554 0.95509 0.91452 0.85824 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.26 16 2 C -0.10 -1.35 5.88 -19.86 -0.12 -1.47 16 3 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 4 C -0.12 -1.81 9.70 22.27 0.22 -1.59 16 5 C -0.09 -1.59 4.72 -19.87 -0.09 -1.69 16 6 C -0.06 -1.17 4.41 29.85 0.13 -1.04 16 7 C -0.08 -1.80 2.18 -11.54 -0.03 -1.82 16 8 H 0.12 1.87 7.19 -2.39 -0.02 1.85 16 9 C -0.14 -2.78 8.53 71.98 0.61 -2.17 16 10 C 0.52 16.19 6.83 87.66 0.60 16.78 16 11 O -0.59 -23.69 16.68 -3.02 -0.05 -23.74 16 12 N -0.61 -18.32 3.30 -817.34 -2.70 -21.02 16 13 C 0.11 2.50 5.20 86.70 0.45 2.95 16 14 C -0.09 -2.71 4.16 -9.26 -0.04 -2.75 16 15 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 16 C 0.14 5.37 6.49 86.66 0.56 5.93 16 17 N -0.62 -32.03 3.38 -697.59 -2.36 -34.39 16 18 C -0.24 -13.63 10.25 84.03 0.86 -12.77 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.07 -3.95 5.48 84.86 0.47 -3.48 16 21 N -0.95 -58.12 10.25 21.65 0.22 -57.90 16 22 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 C 0.20 9.66 4.77 86.59 0.41 10.08 16 27 C -0.11 -3.79 4.01 -9.48 -0.04 -3.83 16 28 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 29 C 0.12 4.50 6.22 86.59 0.54 5.04 16 30 C -0.12 -1.99 8.11 22.27 0.18 -1.81 16 31 C -0.13 -1.88 9.70 22.27 0.22 -1.67 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 34 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 35 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.07 1.60 7.96 -2.38 -0.02 1.59 16 38 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.20 7.92 -2.39 -0.02 1.19 16 41 H 0.09 1.46 6.68 -2.38 -0.02 1.45 16 42 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.09 1.76 7.47 -2.39 -0.02 1.74 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.01 0.28 7.72 -2.39 -0.02 0.27 16 46 H 0.25 14.65 8.31 -92.72 -0.77 13.87 16 47 H 0.00 0.16 6.73 -2.39 -0.02 0.14 16 48 H 0.02 0.89 7.37 -2.38 -0.02 0.87 16 49 H 0.03 1.21 7.29 -2.39 -0.02 1.19 16 50 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.12 1.95 8.03 -2.91 -0.02 1.93 16 52 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -75.95 406.81 3.89 -72.07 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.88 Total: 13.42 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.87 Total: 2.94 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.84 Total: -113.31 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -75.95 3.89 -72.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049239585.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.755 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds