Wall clock time and date at job start Wed Apr 1 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38229 * 120.00090 * 2 1 4 4 C 1.38236 * 120.00178 * 179.97438 * 3 2 1 5 5 C 1.38233 * 119.99941 * 359.95471 * 4 3 2 6 6 C 1.50699 * 119.99998 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47279 * 90.00066 * 6 5 4 8 8 H 1.09004 * 109.47330 * 54.99932 * 7 6 5 9 9 C 1.53002 * 109.47303 * 295.00343 * 7 6 5 10 10 C 1.50700 * 109.47257 * 174.99909 * 7 6 5 11 11 O 1.21279 * 120.00113 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 7 6 13 13 C 1.46743 * 125.32894 * 359.69486 * 12 10 7 14 14 C 1.54099 * 106.63136 * 161.58239 * 13 12 10 15 15 H 1.09002 * 113.48928 * 151.37211 * 14 13 12 16 16 C 1.53963 * 109.44564 * 278.63943 * 14 13 12 17 17 N 1.46784 * 106.62194 * 138.18124 * 16 14 13 18 18 C 1.36933 * 125.33396 * 161.52009 * 17 16 14 19 19 H 1.08000 * 120.00567 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99462 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00377 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47215 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46876 * 120.00438 * 22 20 18 25 25 H 1.48496 * 109.47455 * 240.00189 * 22 20 18 26 26 C 1.46665 * 109.32543 * 341.48047 * 17 16 14 27 27 C 1.53725 * 107.94055 * 0.54459 * 26 17 16 28 28 H 1.09005 * 113.05537 * 140.00047 * 27 26 17 29 29 C 1.46636 * 125.32566 * 179.97438 * 12 10 7 30 30 C 1.38238 * 120.00025 * 0.27922 * 5 4 3 31 31 C 1.38233 * 119.99880 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46801 * 90.00349 * 1 2 3 33 33 H 1.09000 * 109.47358 * 209.99687 * 1 2 3 34 34 H 1.08993 * 109.47274 * 330.00086 * 1 2 3 35 35 H 1.07997 * 120.00095 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.00037 * 179.97438 * 4 3 2 37 37 H 1.08998 * 109.47161 * 330.00070 * 6 5 4 38 38 H 1.09006 * 109.47264 * 210.00157 * 6 5 4 39 39 H 1.08996 * 109.46948 * 59.99698 * 9 7 6 40 40 H 1.08996 * 109.46989 * 180.02562 * 9 7 6 41 41 H 1.09002 * 109.46768 * 299.99531 * 9 7 6 42 42 H 1.09002 * 110.00933 * 281.01526 * 13 12 10 43 43 H 1.09004 * 110.00929 * 42.37802 * 13 12 10 44 44 H 1.09003 * 110.02743 * 257.46867 * 16 14 13 45 45 H 1.08995 * 110.02880 * 18.89190 * 16 14 13 46 46 H 0.97001 * 119.99661 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.77195 * 240.92917 * 26 17 16 48 48 H 1.08994 * 109.76969 * 120.16765 * 26 17 16 49 49 H 1.08998 * 109.76560 * 300.44052 * 29 12 10 50 50 H 1.09004 * 109.75977 * 61.16830 * 29 12 10 51 51 H 1.07998 * 119.99882 * 179.72806 * 30 5 4 52 52 H 1.08000 * 120.00172 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0020 6 6 5.7787 0.0000 0.0032 7 6 6.2876 0.0011 1.4460 8 1 5.8526 -0.8403 1.9854 9 6 5.8823 1.3090 2.1288 10 6 7.7895 -0.1227 1.4490 11 8 8.3935 -0.2034 0.4004 12 7 8.4616 -0.1438 2.6172 13 6 7.8522 -0.0479 3.9486 14 6 8.8971 -0.5753 4.9510 15 1 8.8102 -0.1319 5.9429 16 6 8.8545 -2.1142 4.9737 17 7 10.2485 -2.5723 5.0140 18 6 10.6612 -3.8204 5.3973 19 1 9.9351 -4.5591 5.7030 20 6 12.0129 -4.1363 5.3929 21 7 12.8979 -3.2358 5.0208 22 14 12.5760 -5.8387 5.9165 23 1 11.3946 -6.6589 6.2863 24 1 13.2973 -6.4887 4.7930 25 1 13.4837 -5.7220 7.0859 26 6 11.1298 -1.4839 4.5784 27 6 10.2519 -0.2638 4.2561 28 1 10.6897 0.6772 4.5893 29 6 9.9167 -0.2603 2.7562 30 6 3.5806 -1.1972 -0.0029 31 6 2.1982 -1.1971 0.0005 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.6582 2.1324 -0.0004 36 1 4.1205 2.1324 0.0001 37 1 6.1424 0.8896 -0.5110 38 1 6.1425 -0.8904 -0.5097 39 1 4.7960 1.3985 2.1266 40 1 6.2452 1.3099 3.1565 41 1 6.3173 2.1504 1.5894 42 1 7.6074 0.9903 4.1729 43 1 6.9522 -0.6614 3.9920 44 1 8.3223 -2.4599 5.8599 45 1 8.3648 -2.4874 4.0743 46 1 13.8425 -3.4564 5.0182 47 1 11.6792 -1.7884 3.6877 48 1 11.8294 -1.2344 5.3761 49 1 10.2573 -1.1899 2.3002 50 1 10.4022 0.5872 2.2723 51 1 4.1206 -2.1325 -0.0062 52 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049239586.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:37 Heat of formation + Delta-G solvation = 6.339449 kcal Electronic energy + Delta-G solvation = -30014.431454 eV Core-core repulsion = 26171.741536 eV Total energy + Delta-G solvation = -3842.689918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.51598 -39.66691 -38.31114 -35.37996 -35.01505 -32.65514 -32.00125 -31.13305 -30.19222 -29.64583 -28.44847 -26.02044 -25.52107 -25.39430 -23.58287 -22.90116 -21.97151 -20.69642 -20.19462 -19.38953 -18.98007 -17.26994 -16.69937 -16.13327 -15.87009 -15.66403 -15.43861 -15.16757 -14.74759 -14.64194 -14.10218 -13.90772 -13.64778 -13.56908 -13.34107 -13.23097 -13.04736 -12.72390 -12.69511 -12.37283 -12.29430 -12.15608 -11.90643 -11.77497 -11.71445 -11.48621 -11.27897 -11.19217 -11.10214 -10.97326 -10.88509 -10.82587 -10.34596 -10.10247 -10.01026 -9.89988 -9.67332 -9.54462 -9.09950 -8.66165 -8.62462 -8.33901 -6.84736 -5.73829 -3.07257 1.11730 1.20958 2.81395 3.18668 3.39010 3.44554 3.47029 3.56022 4.40637 4.47327 4.57523 4.63329 4.74488 4.77638 4.82480 4.84103 4.89505 5.05620 5.07870 5.16912 5.27125 5.28312 5.35466 5.41949 5.43119 5.50541 5.52242 5.57818 5.61734 5.68026 5.69074 5.72456 5.76977 5.87782 5.89978 5.93901 6.04137 6.07302 6.14528 6.23043 6.27825 6.33824 6.38290 6.49384 6.55455 6.61065 6.69277 6.82202 6.82531 7.53378 7.55175 7.76200 7.79627 8.24751 8.35675 9.20717 9.81078 10.44836 11.37900 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.002268 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.499584 B =12341.616566 C =12981.499805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.080 4.080 6 C -0.062 4.062 7 C -0.099 4.099 8 H 0.097 0.903 9 C -0.154 4.154 10 C 0.530 3.470 11 O -0.545 6.545 12 N -0.606 5.606 13 C 0.110 3.890 14 C -0.111 4.111 15 H 0.099 0.901 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.187 3.813 27 C -0.123 4.123 28 H 0.088 0.912 29 C 0.118 3.882 30 C -0.112 4.112 31 C -0.119 4.119 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.017 0.983 46 H 0.252 0.748 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.059 0.941 51 H 0.123 0.877 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.889 11.688 -6.876 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.080 4.080 6 C -0.100 4.100 7 C -0.120 4.120 8 H 0.115 0.885 9 C -0.211 4.211 10 C 0.318 3.682 11 O -0.423 6.423 12 N -0.339 5.339 13 C -0.014 4.014 14 C -0.131 4.131 15 H 0.117 0.883 16 C 0.018 3.982 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.062 3.938 27 C -0.142 4.142 28 H 0.106 0.894 29 C -0.004 4.004 30 C -0.130 4.130 31 C -0.137 4.137 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.141 0.859 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.397 11.515 -7.489 25.426 hybrid contribution 0.419 -0.935 0.347 1.082 sum -20.977 10.580 -7.142 24.556 Atomic orbital electron populations 1.20781 0.91406 1.02676 1.02177 1.19907 0.95963 0.93299 1.00297 1.21002 0.94168 0.97413 1.01306 1.21063 0.94003 0.97656 1.00144 1.19886 0.95513 0.93170 0.99476 1.20408 0.89995 1.04461 0.95094 1.21189 0.91895 1.00830 0.98083 0.88539 1.22021 1.02333 0.95608 1.01186 1.20224 0.89389 0.76269 0.82319 1.90690 1.70293 1.50529 1.30805 1.48251 1.08273 1.71811 1.05601 1.22097 0.96792 1.00154 0.82337 1.22988 0.94052 0.98196 0.97845 0.88325 1.21240 0.88772 0.90134 0.98010 1.44229 0.99610 1.10892 1.78139 1.19083 0.91433 0.87679 1.37437 0.90383 1.24811 0.95806 0.98215 1.01637 1.69965 1.00791 1.32670 1.53518 0.86030 0.78412 0.83441 0.77791 1.20525 1.21739 1.21738 1.21032 0.90169 0.83112 0.99478 1.23137 0.96970 1.01407 0.92724 0.89386 1.21969 0.79496 1.01941 0.96967 1.21109 0.94121 0.97832 0.99911 1.21023 0.94165 0.97488 1.00985 0.91346 0.91623 0.91665 0.86285 0.86043 0.90317 0.90020 0.91203 0.91246 0.92244 0.91548 0.90934 0.94708 0.96563 0.93735 0.93287 0.93350 0.90702 0.92294 0.85943 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.09 -0.80 5.88 -104.63 -0.62 -1.41 16 3 C -0.12 -1.01 9.70 -39.59 -0.38 -1.40 16 4 C -0.11 -1.00 7.96 -39.58 -0.32 -1.31 16 5 C -0.08 -0.81 4.71 -104.62 -0.49 -1.30 16 6 C -0.06 -0.69 4.19 -27.89 -0.12 -0.81 16 7 C -0.10 -1.14 2.10 -91.77 -0.19 -1.33 16 8 H 0.10 1.07 7.88 -51.93 -0.41 0.66 16 9 C -0.15 -1.44 8.58 37.16 0.32 -1.12 16 10 C 0.53 8.31 7.21 -10.98 -0.08 8.23 16 11 O -0.55 -10.56 16.23 5.56 0.09 -10.47 16 12 N -0.61 -9.46 3.30 -172.27 -0.57 -10.03 16 13 C 0.11 1.42 4.40 -3.34 -0.01 1.40 16 14 C -0.11 -1.75 4.16 -88.26 -0.37 -2.12 16 15 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.14 2.88 6.49 -3.39 -0.02 2.86 16 17 N -0.60 -15.07 3.38 -171.85 -0.58 -15.65 16 18 C -0.23 -6.31 10.25 -15.06 -0.15 -6.46 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -26.87 10.25 55.49 0.57 -26.31 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.19 4.40 4.77 -3.57 -0.02 4.38 16 27 C -0.12 -2.16 4.01 -88.60 -0.36 -2.52 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 29 C 0.12 2.10 6.21 -3.61 -0.02 2.08 16 30 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 31 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 37 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 39 H 0.07 0.59 6.27 -51.93 -0.33 0.26 16 40 H 0.07 0.62 4.83 -51.93 -0.25 0.37 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.70 6.63 -51.93 -0.34 0.36 16 43 H 0.07 0.85 7.43 -51.93 -0.39 0.46 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.05 1.30 6.73 -51.93 -0.35 0.95 16 48 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 49 H 0.07 1.58 7.29 -51.93 -0.38 1.20 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 51 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 52 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -32.47 401.09 -11.47 -43.94 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.67 Total: -0.22 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.33 Total: -4.41 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.58 Total: -51.99 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.47 -11.47 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049239586.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.282 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds