Wall clock time and date at job start Wed Apr 1 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38229 * 120.00090 * 2 1 4 4 C 1.38236 * 120.00178 * 179.97438 * 3 2 1 5 5 C 1.38233 * 119.99941 * 359.95471 * 4 3 2 6 6 C 1.50699 * 119.99998 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47279 * 90.00066 * 6 5 4 8 8 H 1.09004 * 109.47330 * 54.99932 * 7 6 5 9 9 C 1.53002 * 109.47303 * 295.00343 * 7 6 5 10 10 C 1.50700 * 109.47257 * 174.99909 * 7 6 5 11 11 O 1.21279 * 120.00113 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 7 6 13 13 C 1.46743 * 125.32894 * 359.69486 * 12 10 7 14 14 C 1.54099 * 106.63136 * 161.58239 * 13 12 10 15 15 H 1.09002 * 113.48928 * 151.37211 * 14 13 12 16 16 C 1.53963 * 109.44564 * 278.63943 * 14 13 12 17 17 N 1.46784 * 106.62194 * 138.18124 * 16 14 13 18 18 C 1.36933 * 125.33396 * 161.52009 * 17 16 14 19 19 H 1.08000 * 120.00567 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99462 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00377 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47215 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46876 * 120.00438 * 22 20 18 25 25 H 1.48496 * 109.47455 * 240.00189 * 22 20 18 26 26 C 1.46665 * 109.32543 * 341.48047 * 17 16 14 27 27 C 1.53725 * 107.94055 * 0.54459 * 26 17 16 28 28 H 1.09005 * 113.05537 * 140.00047 * 27 26 17 29 29 C 1.46636 * 125.32566 * 179.97438 * 12 10 7 30 30 C 1.38238 * 120.00025 * 0.27922 * 5 4 3 31 31 C 1.38233 * 119.99880 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46801 * 90.00349 * 1 2 3 33 33 H 1.09000 * 109.47358 * 209.99687 * 1 2 3 34 34 H 1.08993 * 109.47274 * 330.00086 * 1 2 3 35 35 H 1.07997 * 120.00095 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.00037 * 179.97438 * 4 3 2 37 37 H 1.08998 * 109.47161 * 330.00070 * 6 5 4 38 38 H 1.09006 * 109.47264 * 210.00157 * 6 5 4 39 39 H 1.08996 * 109.46948 * 59.99698 * 9 7 6 40 40 H 1.08996 * 109.46989 * 180.02562 * 9 7 6 41 41 H 1.09002 * 109.46768 * 299.99531 * 9 7 6 42 42 H 1.09002 * 110.00933 * 281.01526 * 13 12 10 43 43 H 1.09004 * 110.00929 * 42.37802 * 13 12 10 44 44 H 1.09003 * 110.02743 * 257.46867 * 16 14 13 45 45 H 1.08995 * 110.02880 * 18.89190 * 16 14 13 46 46 H 0.97001 * 119.99661 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.77195 * 240.92917 * 26 17 16 48 48 H 1.08994 * 109.76969 * 120.16765 * 26 17 16 49 49 H 1.08998 * 109.76560 * 300.44052 * 29 12 10 50 50 H 1.09004 * 109.75977 * 61.16830 * 29 12 10 51 51 H 1.07998 * 119.99882 * 179.72806 * 30 5 4 52 52 H 1.08000 * 120.00172 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0020 6 6 5.7787 0.0000 0.0032 7 6 6.2876 0.0011 1.4460 8 1 5.8526 -0.8403 1.9854 9 6 5.8823 1.3090 2.1288 10 6 7.7895 -0.1227 1.4490 11 8 8.3935 -0.2034 0.4004 12 7 8.4616 -0.1438 2.6172 13 6 7.8522 -0.0479 3.9486 14 6 8.8971 -0.5753 4.9510 15 1 8.8102 -0.1319 5.9429 16 6 8.8545 -2.1142 4.9737 17 7 10.2485 -2.5723 5.0140 18 6 10.6612 -3.8204 5.3973 19 1 9.9351 -4.5591 5.7030 20 6 12.0129 -4.1363 5.3929 21 7 12.8979 -3.2358 5.0208 22 14 12.5760 -5.8387 5.9165 23 1 11.3946 -6.6589 6.2863 24 1 13.2973 -6.4887 4.7930 25 1 13.4837 -5.7220 7.0859 26 6 11.1298 -1.4839 4.5784 27 6 10.2519 -0.2638 4.2561 28 1 10.6897 0.6772 4.5893 29 6 9.9167 -0.2603 2.7562 30 6 3.5806 -1.1972 -0.0029 31 6 2.1982 -1.1971 0.0005 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.6582 2.1324 -0.0004 36 1 4.1205 2.1324 0.0001 37 1 6.1424 0.8896 -0.5110 38 1 6.1425 -0.8904 -0.5097 39 1 4.7960 1.3985 2.1266 40 1 6.2452 1.3099 3.1565 41 1 6.3173 2.1504 1.5894 42 1 7.6074 0.9903 4.1729 43 1 6.9522 -0.6614 3.9920 44 1 8.3223 -2.4599 5.8599 45 1 8.3648 -2.4874 4.0743 46 1 13.8425 -3.4564 5.0182 47 1 11.6792 -1.7884 3.6877 48 1 11.8294 -1.2344 5.3761 49 1 10.2573 -1.1899 2.3002 50 1 10.4022 0.5872 2.2723 51 1 4.1206 -2.1325 -0.0062 52 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049239586.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:36 Heat of formation + Delta-G solvation = -10.933280 kcal Electronic energy + Delta-G solvation = -30015.180456 eV Core-core repulsion = 26171.741536 eV Total energy + Delta-G solvation = -3843.438920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.75640 -40.49408 -39.63615 -36.66617 -36.26995 -34.14354 -33.13920 -31.79417 -31.64968 -31.27335 -29.20543 -27.52142 -27.01222 -26.43014 -24.93458 -23.61558 -23.02481 -21.92398 -21.45387 -20.85215 -20.16113 -18.89525 -18.12045 -17.35697 -16.79672 -16.74533 -16.55940 -16.43987 -15.93526 -15.72581 -15.56454 -14.97783 -14.75490 -14.64236 -14.39363 -14.30529 -14.18447 -13.76711 -13.66000 -13.51502 -13.38003 -13.34588 -13.15878 -13.08865 -12.86274 -12.78196 -12.74788 -12.60128 -12.08128 -12.03770 -11.96847 -11.89897 -11.82920 -11.72489 -11.64483 -11.57911 -11.37989 -10.83836 -10.69705 -9.76261 -9.63868 -9.33042 -8.90041 -7.87528 -5.22645 0.44197 0.54993 1.43526 1.44829 1.54868 1.59123 1.99606 2.47369 2.87166 3.29752 3.34438 3.46725 3.63108 3.82060 3.85629 3.90866 3.94522 4.06691 4.10363 4.19399 4.20972 4.24874 4.28728 4.40016 4.46803 4.53808 4.57836 4.65673 4.76549 4.77630 4.80527 4.81999 4.87589 4.90575 4.94617 4.98434 5.01540 5.03977 5.12180 5.16217 5.25168 5.28038 5.33034 5.35671 5.37162 5.46840 5.57065 5.60073 5.76396 5.76560 5.78517 6.18002 6.19552 6.54151 7.09490 7.11758 7.78197 8.39576 9.22763 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.002268 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.499584 B =12341.616566 C =12981.499805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.091 4.091 6 C -0.055 4.055 7 C -0.088 4.088 8 H 0.105 0.895 9 C -0.147 4.147 10 C 0.523 3.477 11 O -0.592 6.592 12 N -0.608 5.608 13 C 0.113 3.887 14 C -0.096 4.096 15 H 0.130 0.870 16 C 0.138 3.862 17 N -0.625 5.625 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.289 1.289 26 C 0.197 3.803 27 C -0.109 4.109 28 H 0.119 0.881 29 C 0.126 3.874 30 C -0.127 4.127 31 C -0.128 4.128 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.007 0.993 46 H 0.246 0.754 47 H 0.003 0.997 48 H 0.016 0.984 49 H 0.027 0.973 50 H 0.066 0.934 51 H 0.119 0.881 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.407 13.404 -5.604 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.091 4.091 6 C -0.093 4.093 7 C -0.109 4.109 8 H 0.123 0.877 9 C -0.204 4.204 10 C 0.314 3.686 11 O -0.473 6.473 12 N -0.340 5.340 13 C -0.009 4.009 14 C -0.115 4.115 15 H 0.148 0.852 16 C 0.013 3.987 17 N -0.351 5.351 18 C -0.370 4.370 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.224 1.224 25 H -0.216 1.216 26 C 0.072 3.928 27 C -0.129 4.129 28 H 0.137 0.863 29 C 0.002 3.998 30 C -0.145 4.145 31 C -0.146 4.146 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.025 0.975 46 H 0.056 0.944 47 H 0.021 0.979 48 H 0.034 0.966 49 H 0.045 0.955 50 H 0.084 0.916 51 H 0.137 0.863 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.974 13.238 -6.190 28.936 hybrid contribution 1.476 -1.523 -0.110 2.124 sum -23.498 11.715 -6.300 27.002 Atomic orbital electron populations 1.20826 0.89681 1.03563 1.02883 1.20256 0.97354 0.93086 0.99217 1.21295 0.94015 0.98360 1.00588 1.21224 0.94511 0.97618 0.99748 1.19769 0.94456 0.93873 1.00981 1.20285 0.91165 1.03101 0.94784 1.21192 0.88293 1.02710 0.98705 0.87713 1.22005 1.03271 0.93786 1.01356 1.21068 0.91037 0.74992 0.81518 1.90667 1.71564 1.52524 1.32511 1.48356 1.07234 1.71470 1.06970 1.22331 0.96044 1.02949 0.79601 1.23023 0.93409 0.94969 1.00109 0.85165 1.21469 0.86019 0.93420 0.97836 1.44561 1.02139 1.10602 1.77817 1.19472 0.91743 0.89141 1.36599 0.90006 1.25667 0.96119 1.01892 1.02447 1.70196 1.00563 1.34394 1.54866 0.85013 0.78101 0.79335 0.76922 1.18902 1.22361 1.21586 1.20724 0.90660 0.85242 0.96205 1.22976 0.97233 0.99796 0.92888 0.86293 1.21664 0.81468 0.99863 0.96778 1.21212 0.94818 0.97807 1.00630 1.21236 0.93864 0.98537 1.00977 0.90643 0.91048 0.90531 0.84179 0.84808 0.90859 0.92296 0.89736 0.90021 0.92197 0.87273 0.88896 0.93569 0.97512 0.94437 0.97901 0.96568 0.95453 0.91555 0.86282 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 71.24 0.71 -0.32 16 2 C -0.10 -1.43 5.88 -19.87 -0.12 -1.54 16 3 C -0.12 -1.74 9.70 22.27 0.22 -1.52 16 4 C -0.11 -1.78 7.96 22.27 0.18 -1.60 16 5 C -0.09 -1.71 4.71 -19.87 -0.09 -1.81 16 6 C -0.06 -1.23 4.19 29.85 0.13 -1.11 16 7 C -0.09 -1.89 2.10 -11.54 -0.02 -1.91 16 8 H 0.10 2.11 7.88 -2.38 -0.02 2.09 16 9 C -0.15 -2.22 8.58 71.98 0.62 -1.60 16 10 C 0.52 16.18 7.21 87.66 0.63 16.82 16 11 O -0.59 -23.67 16.23 -3.03 -0.05 -23.72 16 12 N -0.61 -18.15 3.30 -817.34 -2.70 -20.85 16 13 C 0.11 2.46 4.40 86.70 0.38 2.84 16 14 C -0.10 -2.73 4.16 -9.27 -0.04 -2.77 16 15 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 16 C 0.14 5.34 6.49 86.65 0.56 5.90 16 17 N -0.63 -31.98 3.38 -697.60 -2.36 -34.34 16 18 C -0.24 -13.60 10.25 84.03 0.86 -12.74 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.07 -3.96 5.48 84.86 0.47 -3.49 16 21 N -0.95 -58.08 10.25 21.65 0.22 -57.85 16 22 Si 0.98 46.55 29.55 68.60 2.03 48.57 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 C 0.20 9.66 4.77 86.59 0.41 10.07 16 27 C -0.11 -3.77 4.01 -9.49 -0.04 -3.81 16 28 H 0.12 3.43 8.14 -2.38 -0.02 3.41 16 29 C 0.13 4.51 6.21 86.59 0.54 5.05 16 30 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 31 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 32 H 0.07 0.60 8.14 -2.38 -0.02 0.59 16 33 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 34 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 35 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.13 1.71 8.04 -2.91 -0.02 1.69 16 37 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 38 H 0.06 1.54 7.90 -2.38 -0.02 1.53 16 39 H 0.08 1.08 6.27 -2.39 -0.01 1.07 16 40 H 0.08 1.03 4.83 -2.39 -0.01 1.02 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.11 1.62 6.63 -2.39 -0.02 1.60 16 43 H 0.09 1.75 7.43 -2.38 -0.02 1.73 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.01 0.29 7.72 -2.39 -0.02 0.27 16 46 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 47 H 0.00 0.16 6.73 -2.39 -0.02 0.15 16 48 H 0.02 0.88 7.37 -2.39 -0.02 0.86 16 49 H 0.03 1.23 7.29 -2.39 -0.02 1.21 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 52 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -76.00 401.09 3.86 -72.14 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.89 Total: 13.65 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.82 Total: 2.40 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -4.83 Total: -113.04 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -76.00 3.86 -72.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049239586.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.205 kcal (2) G-P(sol) polarization free energy of solvation -76.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds