Wall clock time and date at job start Wed Apr 1 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.47197 * 2 1 4 4 C 1.38379 * 119.85168 * 265.29279 * 3 2 1 5 5 C 1.37936 * 120.14392 * 180.26149 * 4 3 2 6 6 C 1.39597 * 119.85109 * 359.44291 * 5 4 3 7 7 C 1.47849 * 120.14249 * 180.25591 * 6 5 4 8 8 O 1.21548 * 119.99993 * 204.84521 * 7 6 5 9 9 N 1.34779 * 120.00019 * 24.84383 * 7 6 5 10 10 C 1.46747 * 125.32620 * 5.17317 * 9 7 6 11 11 C 1.54104 * 106.63037 * 161.58298 * 10 9 7 12 12 H 1.08995 * 113.49045 * 151.36603 * 11 10 9 13 13 C 1.53962 * 109.44529 * 278.63458 * 11 10 9 14 14 N 1.46778 * 106.62544 * 138.17622 * 13 11 10 15 15 C 1.36935 * 125.33593 * 161.50549 * 14 13 11 16 16 H 1.08004 * 120.00311 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99848 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00237 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99852 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47340 * 89.99888 * 19 17 15 21 21 H 1.48502 * 109.46846 * 209.99854 * 19 17 15 22 22 H 1.48497 * 109.47080 * 329.99797 * 19 17 15 23 23 C 1.48234 * 109.51638 * 341.52827 * 14 13 11 24 24 C 1.53724 * 107.13925 * 0.47513 * 23 14 13 25 25 H 1.08997 * 112.56583 * 140.21500 * 24 23 14 26 26 C 1.46633 * 125.32745 * 185.47247 * 9 7 6 27 27 C 1.39549 * 119.71156 * 0.28512 * 6 5 4 28 28 C 1.37979 * 119.85403 * 359.97438 * 27 6 5 29 29 C 1.50698 * 119.92839 * 180.02562 * 28 27 6 30 30 C 1.53003 * 109.47273 * 265.00473 * 29 28 27 31 31 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47015 * 300.00174 * 1 2 3 33 33 H 1.08996 * 109.46928 * 60.00200 * 1 2 3 34 34 H 1.09004 * 109.46636 * 239.99584 * 2 1 3 35 35 H 1.09004 * 109.46599 * 120.00341 * 2 1 3 36 36 H 1.08000 * 119.93041 * 359.97438 * 4 3 2 37 37 H 1.08000 * 120.07322 * 179.72836 * 5 4 3 38 38 H 1.09001 * 110.00304 * 281.00289 * 10 9 7 39 39 H 1.08989 * 110.01170 * 42.37615 * 10 9 7 40 40 H 1.08996 * 110.02939 * 257.47530 * 13 11 10 41 41 H 1.09010 * 110.02739 * 18.88608 * 13 11 10 42 42 H 0.96996 * 120.00116 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.29753 * 241.03075 * 23 14 13 44 44 H 1.09004 * 110.03663 * 119.76216 * 23 14 13 45 45 H 1.09003 * 109.76560 * 300.44078 * 26 9 7 46 46 H 1.09003 * 109.76283 * 61.16217 * 26 9 7 47 47 H 1.08001 * 120.07638 * 180.02562 * 27 6 5 48 48 H 1.09006 * 109.47277 * 25.00323 * 29 28 27 49 49 H 1.08995 * 109.47315 * 145.00531 * 29 28 27 50 50 H 1.09002 * 109.47092 * 180.02562 * 30 29 28 51 51 H 1.08991 * 109.47209 * 299.99830 * 30 29 28 52 52 H 1.09003 * 109.47221 * 60.00354 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3549 2.0373 -1.1961 5 6 2.8203 3.3358 -1.2027 6 6 2.9547 4.0318 -0.0001 7 6 3.4477 5.4257 -0.0002 8 8 3.9871 5.8796 0.9899 9 7 3.2989 6.1931 -1.0982 10 6 2.5744 5.8039 -2.3136 11 6 2.2641 7.1056 -3.0779 12 1 2.1929 6.9693 -4.1570 13 6 1.0151 7.7708 -2.4714 14 7 1.2949 9.2103 -2.4080 15 6 0.3527 10.1952 -2.2766 16 1 -0.6937 9.9362 -2.2102 17 6 0.7425 11.5266 -2.2287 18 7 2.0176 11.8424 -2.3100 19 14 -0.5429 12.8703 -2.0501 20 1 -0.7755 13.1446 -0.6093 21 1 -0.0626 14.1066 -2.7181 22 1 -1.8123 12.4279 -2.6810 23 6 2.7566 9.4356 -2.5087 24 6 3.4186 8.0559 -2.6543 25 1 4.2433 8.0608 -3.3670 26 6 3.8408 7.5450 -1.2676 27 6 2.6224 3.4060 1.2021 28 6 2.1631 2.1050 1.1952 29 6 1.8032 1.4278 2.4924 30 6 3.0000 0.6172 2.9938 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2463 1.4992 -2.1262 37 1 3.0758 3.8144 -2.1365 38 1 3.1957 5.1490 -2.9244 39 1 1.6463 5.2978 -2.0486 40 1 0.1485 7.5865 -3.1062 41 1 0.8340 7.3813 -1.4695 42 1 2.2900 12.7727 -2.2762 43 1 3.1260 9.9288 -1.6097 44 1 2.9809 10.0463 -3.3833 45 1 3.4406 8.2020 -0.4953 46 1 4.9284 7.5172 -1.2005 47 1 2.7238 3.9392 2.1359 48 1 1.5381 2.1812 3.2343 49 1 0.9552 0.7620 2.3317 50 1 2.7395 0.1270 3.9319 51 1 3.2651 -0.1361 2.2521 52 1 3.8480 1.2830 3.1546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049256233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:06 Heat of formation + Delta-G solvation = 13.782220 kcal Electronic energy + Delta-G solvation = -30335.936106 eV Core-core repulsion = 26493.568931 eV Total energy + Delta-G solvation = -3842.367176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.70617 -39.55528 -37.98960 -35.18026 -34.68892 -33.67970 -32.22643 -30.55626 -30.13451 -29.62699 -29.12066 -25.86966 -25.60260 -24.79939 -23.74551 -22.99323 -21.78528 -21.04433 -20.17372 -19.45019 -19.34620 -17.23697 -16.68249 -16.28533 -16.13094 -15.77030 -15.43722 -14.72288 -14.47498 -14.35335 -14.10851 -13.94514 -13.78354 -13.62230 -13.48913 -13.26883 -13.11957 -12.75682 -12.66810 -12.60113 -12.18539 -12.01845 -11.81353 -11.74977 -11.62242 -11.57619 -11.41012 -11.36806 -10.98245 -10.91376 -10.81264 -10.76457 -10.37062 -10.12226 -10.00712 -9.89838 -9.71980 -9.63764 -8.98749 -8.75659 -8.62398 -8.34937 -6.84046 -5.72264 -3.05310 0.80666 1.22540 2.85724 3.15694 3.40698 3.45623 3.47312 3.72486 4.39680 4.46784 4.48853 4.54004 4.65718 4.73433 4.77843 4.95187 4.96233 5.02552 5.08733 5.13052 5.19428 5.26944 5.32944 5.35923 5.42795 5.50671 5.53460 5.56882 5.60486 5.65193 5.69848 5.71939 5.75625 5.80460 5.86893 5.92192 5.93147 6.03862 6.10448 6.20500 6.25821 6.27097 6.33805 6.43274 6.55809 6.61896 6.68326 6.77862 6.83884 7.52086 7.55592 7.70945 7.79670 8.23526 8.31385 9.20019 9.81653 10.45861 11.39852 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.002480 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.173249 B =11286.154544 C =11452.741101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.061 4.061 4 C -0.124 4.124 5 C -0.100 4.100 6 C -0.124 4.124 7 C 0.569 3.431 8 O -0.541 6.541 9 N -0.602 5.602 10 C 0.107 3.893 11 C -0.110 4.110 12 H 0.100 0.900 13 C 0.146 3.854 14 N -0.604 5.604 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.188 3.812 24 C -0.124 4.124 25 H 0.088 0.912 26 C 0.119 3.881 27 C -0.058 4.058 28 C -0.090 4.090 29 C -0.088 4.088 30 C -0.148 4.148 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.131 0.869 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.056 0.944 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 -25.581 2.066 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.061 4.061 4 C -0.142 4.142 5 C -0.118 4.118 6 C -0.127 4.127 7 C 0.358 3.642 8 O -0.419 6.419 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.130 4.130 12 H 0.118 0.882 13 C 0.020 3.980 14 N -0.331 5.331 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.571 5.571 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.064 3.936 24 C -0.144 4.144 25 H 0.106 0.894 26 C -0.003 4.003 27 C -0.077 4.077 28 C -0.090 4.090 29 C -0.125 4.125 30 C -0.205 4.205 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.149 0.851 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.853 -25.120 2.676 25.330 hybrid contribution -0.598 0.888 -0.015 1.071 sum 1.254 -24.232 2.661 24.410 Atomic orbital electron populations 1.21768 0.94512 1.01757 1.02534 1.20648 0.96383 0.92633 1.03069 1.19914 0.97512 0.96026 0.92633 1.20959 1.00747 0.94919 0.97578 1.21887 0.97190 0.94729 0.98043 1.19870 1.04202 0.94162 0.94478 1.17962 0.79519 0.84965 0.81732 1.90768 1.44606 1.74152 1.32381 1.48117 1.53333 1.16929 1.15075 1.22294 0.96004 0.97403 0.85867 1.23000 0.97372 0.93054 0.99592 0.88199 1.21209 0.93991 0.86075 0.96724 1.44593 1.02517 0.99505 1.86502 1.19048 0.87982 0.85441 1.43127 0.90487 1.24786 0.96370 0.97087 1.02189 1.69931 1.13355 1.16853 1.56933 0.86112 0.80342 0.81589 0.77675 1.21620 1.21663 1.20724 1.21322 0.82529 0.88403 1.01386 1.23151 0.97567 0.99092 0.94541 0.89359 1.22008 0.97793 0.82113 0.98408 1.21100 0.95345 0.93742 0.97510 1.19652 1.00565 0.93842 0.94915 1.20597 0.98739 0.99383 0.93752 1.21773 0.98039 0.99986 1.00740 0.92344 0.92323 0.92335 0.90990 0.90515 0.85596 0.84203 0.91534 0.90474 0.94694 0.96560 0.93693 0.93052 0.93151 0.90465 0.92099 0.85065 0.90873 0.90553 0.92353 0.92518 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.72 37.16 0.36 -0.58 16 2 C -0.09 -0.61 5.37 -27.88 -0.15 -0.76 16 3 C -0.06 -0.57 5.14 -104.54 -0.54 -1.10 16 4 C -0.12 -1.18 9.66 -39.64 -0.38 -1.56 16 5 C -0.10 -1.13 8.18 -39.19 -0.32 -1.45 16 6 C -0.12 -1.74 5.67 -104.97 -0.60 -2.34 16 7 C 0.57 9.85 7.63 -12.33 -0.09 9.76 16 8 O -0.54 -11.23 16.92 5.32 0.09 -11.14 16 9 N -0.60 -9.90 3.30 -173.38 -0.57 -10.47 16 10 C 0.11 1.44 4.23 -3.33 -0.01 1.43 16 11 C -0.11 -1.76 4.17 -88.26 -0.37 -2.13 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.15 2.97 6.49 -3.39 -0.02 2.94 16 14 N -0.60 -15.25 3.42 -170.57 -0.58 -15.83 16 15 C -0.23 -6.34 10.25 -15.06 -0.15 -6.50 16 16 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -26.96 10.25 55.49 0.57 -26.39 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.19 4.43 4.84 -2.71 -0.01 4.41 16 24 C -0.12 -2.19 3.97 -88.60 -0.35 -2.55 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 C 0.12 2.14 6.21 -3.61 -0.02 2.11 16 27 C -0.06 -0.75 9.22 -39.19 -0.36 -1.12 16 28 C -0.09 -0.93 5.13 -104.68 -0.54 -1.47 16 29 C -0.09 -0.71 5.38 -27.88 -0.15 -0.86 16 30 C -0.15 -1.07 9.72 37.16 0.36 -0.71 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.40 6.79 -51.93 -0.35 0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.08 0.47 5.60 -51.93 -0.29 0.18 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.40 4.41 -52.49 -0.23 1.17 16 38 H 0.07 0.71 6.38 -51.93 -0.33 0.38 16 39 H 0.08 0.99 6.96 -51.93 -0.36 0.63 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.02 0.36 7.72 -51.92 -0.40 -0.04 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.05 1.36 6.76 -51.93 -0.35 1.01 16 44 H 0.05 1.30 7.40 -51.93 -0.38 0.92 16 45 H 0.08 1.65 7.30 -51.93 -0.38 1.27 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.13 1.76 7.85 -52.49 -0.41 1.35 16 48 H 0.07 0.59 8.05 -51.93 -0.42 0.18 16 49 H 0.08 0.53 5.59 -51.93 -0.29 0.24 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.06 0.39 6.79 -51.93 -0.35 0.03 16 52 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -32.81 396.24 -11.32 -44.14 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.33 Total: -0.69 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.45 Total: -2.79 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.59 Total: -52.70 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.81 -11.32 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049256233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.917 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds