Wall clock time and date at job start Wed Apr 1 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.47197 * 2 1 4 4 C 1.38379 * 119.85168 * 265.29279 * 3 2 1 5 5 C 1.37936 * 120.14392 * 180.26149 * 4 3 2 6 6 C 1.39597 * 119.85109 * 359.44291 * 5 4 3 7 7 C 1.47849 * 120.14249 * 180.25591 * 6 5 4 8 8 O 1.21548 * 119.99993 * 204.84521 * 7 6 5 9 9 N 1.34779 * 120.00019 * 24.84383 * 7 6 5 10 10 C 1.46747 * 125.32620 * 5.17317 * 9 7 6 11 11 C 1.54104 * 106.63037 * 161.58298 * 10 9 7 12 12 H 1.08995 * 113.49045 * 151.36603 * 11 10 9 13 13 C 1.53962 * 109.44529 * 278.63458 * 11 10 9 14 14 N 1.46778 * 106.62544 * 138.17622 * 13 11 10 15 15 C 1.36935 * 125.33593 * 161.50549 * 14 13 11 16 16 H 1.08004 * 120.00311 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99848 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00237 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99852 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47340 * 89.99888 * 19 17 15 21 21 H 1.48502 * 109.46846 * 209.99854 * 19 17 15 22 22 H 1.48497 * 109.47080 * 329.99797 * 19 17 15 23 23 C 1.48234 * 109.51638 * 341.52827 * 14 13 11 24 24 C 1.53724 * 107.13925 * 0.47513 * 23 14 13 25 25 H 1.08997 * 112.56583 * 140.21500 * 24 23 14 26 26 C 1.46633 * 125.32745 * 185.47247 * 9 7 6 27 27 C 1.39549 * 119.71156 * 0.28512 * 6 5 4 28 28 C 1.37979 * 119.85403 * 359.97438 * 27 6 5 29 29 C 1.50698 * 119.92839 * 180.02562 * 28 27 6 30 30 C 1.53003 * 109.47273 * 265.00473 * 29 28 27 31 31 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47015 * 300.00174 * 1 2 3 33 33 H 1.08996 * 109.46928 * 60.00200 * 1 2 3 34 34 H 1.09004 * 109.46636 * 239.99584 * 2 1 3 35 35 H 1.09004 * 109.46599 * 120.00341 * 2 1 3 36 36 H 1.08000 * 119.93041 * 359.97438 * 4 3 2 37 37 H 1.08000 * 120.07322 * 179.72836 * 5 4 3 38 38 H 1.09001 * 110.00304 * 281.00289 * 10 9 7 39 39 H 1.08989 * 110.01170 * 42.37615 * 10 9 7 40 40 H 1.08996 * 110.02939 * 257.47530 * 13 11 10 41 41 H 1.09010 * 110.02739 * 18.88608 * 13 11 10 42 42 H 0.96996 * 120.00116 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.29753 * 241.03075 * 23 14 13 44 44 H 1.09004 * 110.03663 * 119.76216 * 23 14 13 45 45 H 1.09003 * 109.76560 * 300.44078 * 26 9 7 46 46 H 1.09003 * 109.76283 * 61.16217 * 26 9 7 47 47 H 1.08001 * 120.07638 * 180.02562 * 27 6 5 48 48 H 1.09006 * 109.47277 * 25.00323 * 29 28 27 49 49 H 1.08995 * 109.47315 * 145.00531 * 29 28 27 50 50 H 1.09002 * 109.47092 * 180.02562 * 30 29 28 51 51 H 1.08991 * 109.47209 * 299.99830 * 30 29 28 52 52 H 1.09003 * 109.47221 * 60.00354 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3549 2.0373 -1.1961 5 6 2.8203 3.3358 -1.2027 6 6 2.9547 4.0318 -0.0001 7 6 3.4477 5.4257 -0.0002 8 8 3.9871 5.8796 0.9899 9 7 3.2989 6.1931 -1.0982 10 6 2.5744 5.8039 -2.3136 11 6 2.2641 7.1056 -3.0779 12 1 2.1929 6.9693 -4.1570 13 6 1.0151 7.7708 -2.4714 14 7 1.2949 9.2103 -2.4080 15 6 0.3527 10.1952 -2.2766 16 1 -0.6937 9.9362 -2.2102 17 6 0.7425 11.5266 -2.2287 18 7 2.0176 11.8424 -2.3100 19 14 -0.5429 12.8703 -2.0501 20 1 -0.7755 13.1446 -0.6093 21 1 -0.0626 14.1066 -2.7181 22 1 -1.8123 12.4279 -2.6810 23 6 2.7566 9.4356 -2.5087 24 6 3.4186 8.0559 -2.6543 25 1 4.2433 8.0608 -3.3670 26 6 3.8408 7.5450 -1.2676 27 6 2.6224 3.4060 1.2021 28 6 2.1631 2.1050 1.1952 29 6 1.8032 1.4278 2.4924 30 6 3.0000 0.6172 2.9938 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2463 1.4992 -2.1262 37 1 3.0758 3.8144 -2.1365 38 1 3.1957 5.1490 -2.9244 39 1 1.6463 5.2978 -2.0486 40 1 0.1485 7.5865 -3.1062 41 1 0.8340 7.3813 -1.4695 42 1 2.2900 12.7727 -2.2762 43 1 3.1260 9.9288 -1.6097 44 1 2.9809 10.0463 -3.3833 45 1 3.4406 8.2020 -0.4953 46 1 4.9284 7.5172 -1.2005 47 1 2.7238 3.9392 2.1359 48 1 1.5381 2.1812 3.2343 49 1 0.9552 0.7620 2.3317 50 1 2.7395 0.1270 3.9319 51 1 3.2651 -0.1361 2.2521 52 1 3.8480 1.2830 3.1546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049256233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:00 Heat of formation + Delta-G solvation = -4.375836 kcal Electronic energy + Delta-G solvation = -30336.723498 eV Core-core repulsion = 26493.568931 eV Total energy + Delta-G solvation = -3843.154568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.99 seconds Orbital eigenvalues (eV) -41.90336 -40.60878 -39.38260 -36.71011 -35.66375 -34.33057 -34.05537 -32.02885 -31.32873 -30.84861 -30.07412 -27.50350 -27.12892 -25.80030 -24.76468 -24.15676 -22.49089 -22.21530 -21.70982 -20.87945 -20.55837 -18.94794 -18.04286 -17.40330 -17.23777 -16.84492 -16.74524 -16.40338 -15.78301 -15.49838 -15.28777 -14.83481 -14.76692 -14.61214 -14.51474 -14.46571 -14.24004 -14.08197 -13.73663 -13.50291 -13.41651 -13.38914 -13.22360 -13.04015 -12.85214 -12.74242 -12.59446 -12.50497 -12.11745 -12.04520 -12.00993 -11.88811 -11.75777 -11.65417 -11.59287 -11.49391 -11.33987 -11.03314 -10.73421 -9.89802 -9.70096 -9.52173 -8.91039 -7.87414 -5.22255 -0.12117 0.40131 1.43190 1.45442 1.53862 1.68265 1.91651 2.47480 2.78549 3.28821 3.31816 3.42185 3.61179 3.71736 3.84002 3.84563 3.90770 3.95444 4.13123 4.14388 4.20273 4.29399 4.46246 4.47794 4.49480 4.52935 4.55424 4.56465 4.60804 4.74184 4.77513 4.78620 4.84167 4.87947 4.99408 5.02493 5.06520 5.08907 5.11695 5.13485 5.19119 5.25840 5.34374 5.35170 5.38254 5.44938 5.48816 5.51956 5.58507 5.68495 5.75889 5.98311 6.17544 6.42528 6.99691 7.07644 7.75852 8.39011 9.23072 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.002480 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.173249 B =11286.154544 C =11452.741101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.054 4.054 4 C -0.119 4.119 5 C -0.096 4.096 6 C -0.149 4.149 7 C 0.562 3.438 8 O -0.593 6.593 9 N -0.604 5.604 10 C 0.111 3.889 11 C -0.094 4.094 12 H 0.136 0.864 13 C 0.140 3.860 14 N -0.627 5.627 15 C -0.242 4.242 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.977 3.023 20 H -0.292 1.292 21 H -0.292 1.292 22 H -0.266 1.266 23 C 0.196 3.804 24 C -0.109 4.109 25 H 0.124 0.876 26 C 0.125 3.875 27 C -0.080 4.080 28 C -0.092 4.092 29 C -0.088 4.088 30 C -0.145 4.145 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.000 1.000 42 H 0.247 0.753 43 H 0.006 0.994 44 H 0.022 0.978 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.109 0.891 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.065 0.935 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -29.726 -0.192 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.055 4.055 4 C -0.136 4.136 5 C -0.114 4.114 6 C -0.152 4.152 7 C 0.354 3.646 8 O -0.475 6.475 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.113 4.113 12 H 0.154 0.846 13 C 0.014 3.986 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.098 0.902 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.805 3.195 20 H -0.219 1.219 21 H -0.218 1.218 22 H -0.191 1.191 23 C 0.072 3.928 24 C -0.129 4.129 25 H 0.141 0.859 26 C 0.002 3.998 27 C -0.099 4.099 28 C -0.092 4.092 29 C -0.125 4.125 30 C -0.202 4.202 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.179 0.821 37 H 0.175 0.825 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.024 0.976 44 H 0.040 0.960 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.127 0.873 48 H 0.083 0.917 49 H 0.112 0.888 50 H 0.091 0.909 51 H 0.084 0.916 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.801 -29.313 0.388 29.326 hybrid contribution -0.341 2.114 0.762 2.273 sum 0.460 -27.199 1.150 27.227 Atomic orbital electron populations 1.21769 0.94075 1.02675 1.02023 1.20731 0.96573 0.90770 1.04468 1.20325 0.95833 0.97266 0.92051 1.21364 0.99118 0.94170 0.98987 1.22034 0.96750 0.95371 0.97241 1.19705 1.06756 0.92505 0.96193 1.18633 0.78671 0.86312 0.80989 1.90725 1.47028 1.75506 1.34251 1.48196 1.53253 1.15933 1.16101 1.22544 0.97285 0.96587 0.84673 1.23044 0.93491 0.93150 1.01618 0.84574 1.21416 0.96932 0.83750 0.96465 1.44931 1.02839 1.01355 1.86229 1.19437 0.88839 0.86526 1.42356 0.90209 1.25634 0.98316 0.99347 1.02659 1.70161 1.15075 1.16652 1.58083 0.85096 0.78545 0.78586 0.77225 1.21901 1.21787 1.19073 1.21026 0.82511 0.91400 0.97894 1.23001 0.98971 0.95807 0.95074 0.85852 1.21747 0.98207 0.82639 0.97220 1.21093 0.97053 0.95101 0.96636 1.19875 0.99855 0.92809 0.96631 1.20655 0.99726 0.99471 0.92630 1.21755 0.96975 0.99725 1.01786 0.90756 0.93094 0.92647 0.89134 0.89681 0.82128 0.82493 0.86729 0.89247 0.93507 0.98176 0.94382 0.97588 0.95989 0.95348 0.91077 0.87293 0.91677 0.88775 0.90852 0.91559 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.72 71.98 0.70 -0.63 16 2 C -0.09 -0.82 5.37 29.85 0.16 -0.66 16 3 C -0.05 -0.84 5.14 -19.81 -0.10 -0.94 16 4 C -0.12 -1.76 9.66 22.23 0.21 -1.54 16 5 C -0.10 -1.86 8.18 22.53 0.18 -1.68 16 6 C -0.15 -4.12 5.67 -20.09 -0.11 -4.23 16 7 C 0.56 20.06 7.63 86.79 0.66 20.72 16 8 O -0.59 -26.43 16.92 -3.87 -0.07 -26.50 16 9 N -0.60 -19.63 3.30 -820.74 -2.71 -22.34 16 10 C 0.11 2.60 4.23 86.71 0.37 2.97 16 11 C -0.09 -2.73 4.17 -9.27 -0.04 -2.77 16 12 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 13 C 0.14 5.58 6.49 86.65 0.56 6.14 16 14 N -0.63 -32.50 3.42 -693.55 -2.37 -34.88 16 15 C -0.24 -13.87 10.25 84.03 0.86 -13.01 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 18 N -0.95 -58.15 10.25 21.65 0.22 -57.93 16 19 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.20 9.67 4.84 86.29 0.42 10.08 16 24 C -0.11 -3.79 3.97 -9.49 -0.04 -3.83 16 25 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 26 C 0.12 4.63 6.21 86.59 0.54 5.17 16 27 C -0.08 -2.13 9.22 22.52 0.21 -1.92 16 28 C -0.09 -1.80 5.13 -19.90 -0.10 -1.90 16 29 C -0.09 -1.32 5.38 29.85 0.16 -1.16 16 30 C -0.15 -1.89 9.72 71.98 0.70 -1.19 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.54 6.79 -2.39 -0.02 0.52 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.57 8.05 -2.39 -0.02 0.55 16 35 H 0.08 0.69 5.60 -2.38 -0.01 0.68 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.16 2.37 4.41 -2.91 -0.01 2.35 16 38 H 0.12 1.74 6.38 -2.39 -0.02 1.73 16 39 H 0.09 1.97 6.96 -2.39 -0.02 1.95 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.00 0.02 7.72 -2.38 -0.02 0.00 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.01 0.34 6.76 -2.39 -0.02 0.32 16 44 H 0.02 1.19 7.40 -2.38 -0.02 1.17 16 45 H 0.03 1.32 7.30 -2.39 -0.02 1.30 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.11 3.27 7.85 -2.91 -0.02 3.24 16 48 H 0.06 1.07 8.05 -2.38 -0.02 1.05 16 49 H 0.09 1.08 5.59 -2.39 -0.01 1.07 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.07 0.73 6.79 -2.39 -0.02 0.71 16 52 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -78.80 396.24 3.82 -74.98 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.91 Total: 11.58 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.81 Total: 6.22 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -4.86 Total: -115.14 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.07 Total: -26.50 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -78.80 3.82 -74.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049256233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.601 kcal (2) G-P(sol) polarization free energy of solvation -78.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.99 seconds