Wall clock time and date at job start Wed Apr 1 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38228 * 120.00231 * 2 1 4 4 C 1.38232 * 120.00038 * 180.26756 * 3 2 1 5 5 C 1.38237 * 119.99730 * 359.74854 * 4 3 2 6 6 C 1.38227 * 120.00273 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00026 * 179.97438 * 6 5 4 8 8 C 1.38232 * 119.99997 * 0.02562 * 6 5 4 9 9 C 1.50699 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.46845 * 89.99850 * 9 8 6 11 11 O 1.21283 * 119.99840 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99699 * 180.02562 * 10 9 8 13 13 C 1.46798 * 119.57997 * 0.02562 * 12 10 9 14 14 C 1.53462 * 107.59015 * 232.03522 * 13 12 10 15 15 C 1.52741 * 108.43820 * 301.90877 * 14 13 12 16 16 C 1.53016 * 110.79926 * 63.77491 * 15 14 13 17 17 H 1.09003 * 111.38352 * 69.73310 * 16 15 14 18 18 C 1.45123 * 119.57355 * 180.02562 * 12 10 9 19 19 H 1.09001 * 110.60924 * 11.49039 * 18 12 10 20 20 C 1.54421 * 111.59908 * 248.67625 * 18 12 10 21 21 C 1.54572 * 102.44666 * 203.42607 * 20 18 12 22 22 N 1.47111 * 107.25419 * 21.66821 * 21 20 18 23 23 C 1.36943 * 125.76713 * 182.62041 * 22 21 20 24 24 H 1.07997 * 119.99783 * 179.97438 * 23 22 21 25 25 C 1.38815 * 119.99739 * 359.97243 * 23 22 21 26 26 N 1.31614 * 120.00130 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99816 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47243 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47165 * 119.99746 * 27 25 23 30 30 H 1.48503 * 109.47065 * 240.00272 * 27 25 23 31 31 H 1.08999 * 109.47393 * 270.23801 * 1 2 3 32 32 H 1.09007 * 109.46983 * 30.23779 * 1 2 3 33 33 H 1.09001 * 109.47149 * 150.23614 * 1 2 3 34 34 H 1.08005 * 120.00193 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.00281 * 179.71967 * 4 3 2 36 36 H 1.08003 * 119.99785 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47204 * 270.02226 * 7 6 5 38 38 H 1.08997 * 109.47072 * 30.02156 * 7 6 5 39 39 H 1.08996 * 109.46926 * 150.02585 * 7 6 5 40 40 H 1.09000 * 109.47314 * 330.00114 * 9 8 6 41 41 H 1.08996 * 109.47784 * 209.99931 * 9 8 6 42 42 H 1.09000 * 109.83144 * 351.55556 * 13 12 10 43 43 H 1.08996 * 109.83810 * 112.50709 * 13 12 10 44 44 H 1.09001 * 109.63823 * 182.23007 * 14 13 12 45 45 H 1.08994 * 109.64495 * 61.59991 * 14 13 12 46 46 H 1.08993 * 109.21439 * 303.43223 * 15 14 13 47 47 H 1.09001 * 109.20729 * 184.11273 * 15 14 13 48 48 H 1.09003 * 110.81629 * 85.18973 * 20 18 12 49 49 H 1.08994 * 110.81541 * 321.66233 * 20 18 12 50 50 H 1.09004 * 109.88577 * 262.25291 * 21 20 18 51 51 H 1.09000 * 110.01515 * 141.15511 * 21 20 18 52 52 H 0.97000 * 119.99951 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0056 5 6 4.2716 -0.0002 -0.0059 6 6 3.5804 -1.1973 -0.0001 7 6 4.3339 -2.5024 -0.0011 8 6 2.1981 -1.1972 0.0055 9 6 1.4445 -2.5022 0.0112 10 6 1.1992 -2.9343 1.4340 11 8 1.5966 -2.2496 2.3528 12 7 0.5380 -4.0816 1.6853 13 6 0.0615 -4.9034 0.5661 14 6 -1.4299 -5.1817 0.7972 15 6 -1.5874 -5.8826 2.1451 16 6 -1.1407 -4.9687 3.2882 17 1 -1.8328 -4.1381 3.4267 18 6 0.3063 -4.4886 3.0589 19 1 0.5423 -3.6752 3.7451 20 6 1.1269 -5.7442 3.4258 21 6 0.3210 -6.3361 4.6046 22 7 -1.0483 -5.8075 4.5061 23 6 -2.0652 -6.0492 5.3908 24 1 -3.0387 -5.6111 5.2274 25 6 -1.8446 -6.8575 6.4977 26 7 -0.6584 -7.3918 6.6965 27 14 -3.2319 -7.1878 7.7042 28 1 -4.4566 -6.4765 7.2573 29 1 -3.5001 -8.6472 7.7626 30 1 -2.8419 -6.7017 9.0521 31 1 -0.3634 0.0043 1.0276 32 1 -0.3633 0.8879 -0.5176 33 1 -0.3633 -0.8921 -0.5102 34 1 1.6582 2.1325 -0.0004 35 1 4.1205 2.1323 -0.0102 36 1 5.3516 -0.0002 -0.0107 37 1 4.5110 -2.8190 -1.0290 38 1 5.2886 -2.3711 0.5082 39 1 3.7471 -3.2610 0.5167 40 1 2.0315 -3.2630 -0.5034 41 1 0.4901 -2.3730 -0.4990 42 1 0.1963 -4.3648 -0.3718 43 1 0.6128 -5.8432 0.5363 44 1 -1.8099 -5.8247 0.0033 45 1 -1.9810 -4.2413 0.8065 46 1 -0.9807 -6.7880 2.1517 47 1 -2.6338 -6.1518 2.2891 48 1 2.1330 -5.4702 3.7435 49 1 1.1603 -6.4429 2.5900 50 1 0.7691 -6.0310 5.5503 51 1 0.3044 -7.4238 4.5362 52 1 -0.5042 -7.9563 7.4701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049502855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:03 Heat of formation + Delta-G solvation = 12.310538 kcal Electronic energy + Delta-G solvation = -31172.127256 eV Core-core repulsion = 27329.696263 eV Total energy + Delta-G solvation = -3842.430992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.66338 -39.56357 -37.79396 -35.25301 -33.67576 -33.44750 -32.37709 -32.17508 -29.48091 -28.74700 -28.11784 -26.73658 -26.67622 -24.48796 -24.27260 -22.05467 -21.51739 -20.77920 -20.12301 -19.67202 -18.07843 -17.20033 -16.87291 -16.35412 -16.25784 -15.47858 -14.79706 -14.76429 -14.63452 -14.23778 -14.14937 -13.85040 -13.49590 -13.44405 -13.30057 -13.03008 -12.96950 -12.86308 -12.77728 -12.59070 -12.29715 -12.05063 -11.91349 -11.71765 -11.58317 -11.37182 -11.06596 -10.99416 -10.96889 -10.89297 -10.79487 -10.64530 -10.46768 -10.06699 -10.04467 -9.64619 -9.60462 -9.51525 -8.62318 -8.61008 -8.58016 -8.24352 -6.85593 -5.70985 -3.05040 1.28960 1.33824 2.81098 3.18809 3.40073 3.45671 3.47953 3.70327 4.48418 4.52009 4.67827 4.70219 4.80712 4.86854 4.97154 5.00145 5.14537 5.19027 5.24465 5.28743 5.32485 5.39343 5.48223 5.48967 5.54571 5.56687 5.60065 5.61774 5.65062 5.70747 5.75154 5.80632 5.88381 5.99770 6.07406 6.11046 6.14777 6.22333 6.30971 6.36696 6.42906 6.47911 6.51641 6.60517 6.61053 6.75024 6.97194 7.00792 7.07672 7.55774 7.60615 7.66648 7.83154 8.23742 8.42093 9.20795 9.80590 10.46548 11.40265 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002731 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.836350 B =10251.980094 C =10315.216164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.117 4.117 8 C -0.063 4.063 9 C -0.107 4.107 10 C 0.512 3.488 11 O -0.531 6.531 12 N -0.594 5.594 13 C 0.105 3.895 14 C -0.133 4.133 15 C -0.130 4.130 16 C 0.156 3.844 17 H 0.058 0.942 18 C 0.132 3.868 19 H 0.100 0.900 20 C -0.152 4.152 21 C 0.180 3.820 22 N -0.598 5.598 23 C -0.225 4.225 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.921 5.921 27 Si 0.911 3.089 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.051 0.949 51 H 0.041 0.959 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 10.994 -19.966 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.067 4.067 7 C -0.174 4.174 8 C -0.064 4.064 9 C -0.147 4.147 10 C 0.299 3.701 11 O -0.407 6.407 12 N -0.327 5.327 13 C -0.017 4.017 14 C -0.172 4.172 15 C -0.170 4.170 16 C 0.048 3.952 17 H 0.076 0.924 18 C 0.028 3.972 19 H 0.118 0.882 20 C -0.191 4.191 21 C 0.055 3.945 22 N -0.323 5.323 23 C -0.354 4.354 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.742 3.258 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.606 11.207 -19.216 23.206 hybrid contribution -0.694 -0.358 0.724 1.065 sum 5.913 10.849 -18.492 22.240 Atomic orbital electron populations 1.20873 0.91410 1.02411 1.02816 1.19680 0.95874 0.92563 0.98616 1.20920 0.94253 0.97214 1.02138 1.21052 0.94289 0.97796 1.00188 1.20926 0.99505 0.91966 1.02151 1.19679 0.92955 0.95449 0.98644 1.20831 1.00096 0.94518 1.01915 1.18983 0.92750 0.93224 1.01425 1.20802 1.02001 0.96186 0.95683 1.20438 0.78085 0.80682 0.90868 1.90719 1.50300 1.53308 1.46404 1.47630 1.55772 1.22100 1.07164 1.21851 0.95610 0.95610 0.88674 1.21930 0.95016 1.01190 0.99058 1.22117 1.01977 0.99650 0.93229 1.21334 0.93110 0.92951 0.87854 0.92366 1.21704 0.96604 0.97759 0.81172 0.88151 1.23114 0.98992 0.96673 1.00308 1.21168 0.83252 0.96695 0.93352 1.44716 1.08674 1.55100 1.23796 1.19075 0.90253 1.24907 1.01131 0.90418 1.24796 0.97009 0.99996 0.98589 1.69967 1.20393 1.36815 1.29631 0.86056 0.81050 0.77571 0.81147 1.20534 1.21808 1.21773 0.90739 0.91608 0.91488 0.86299 0.86321 0.86306 0.91189 0.91414 0.91477 0.88171 0.87919 0.90217 0.91221 0.91335 0.91829 0.91866 0.92193 0.92151 0.92342 0.93123 0.94063 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.60 36.01 0.35 -0.84 16 2 C -0.07 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.13 -1.40 9.70 -39.59 -0.38 -1.79 16 4 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.13 -1.40 9.70 -39.59 -0.38 -1.78 16 6 C -0.07 -0.80 5.88 -104.63 -0.62 -1.41 16 7 C -0.12 -1.17 9.19 36.01 0.33 -0.84 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.11 -1.18 3.06 -29.03 -0.09 -1.27 16 10 C 0.51 7.72 7.25 -10.98 -0.08 7.64 16 11 O -0.53 -10.31 15.38 5.55 0.09 -10.23 16 12 N -0.59 -8.82 2.73 -165.04 -0.45 -9.27 16 13 C 0.11 1.19 6.05 -3.64 -0.02 1.17 16 14 C -0.13 -1.63 6.11 -26.62 -0.16 -1.79 16 15 C -0.13 -2.20 5.10 -26.86 -0.14 -2.34 16 16 C 0.16 3.15 3.59 -66.40 -0.24 2.91 16 17 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 18 C 0.13 2.47 3.08 -67.31 -0.21 2.26 16 19 H 0.10 2.17 7.00 -51.93 -0.36 1.81 16 20 C -0.15 -2.92 6.08 -25.16 -0.15 -3.07 16 21 C 0.18 4.37 5.19 -2.88 -0.01 4.35 16 22 N -0.60 -14.93 2.91 -162.25 -0.47 -15.40 16 23 C -0.23 -6.19 10.29 -15.06 -0.15 -6.35 16 24 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 25 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 26 N -0.92 -26.98 10.33 55.49 0.57 -26.40 16 27 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.53 8.09 -51.92 -0.42 0.11 16 33 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 40 H 0.10 0.89 6.49 -51.93 -0.34 0.56 16 41 H 0.10 0.92 5.41 -51.93 -0.28 0.64 16 42 H 0.08 0.65 5.82 -51.93 -0.30 0.35 16 43 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.06 1.03 6.81 -51.93 -0.35 0.67 16 50 H 0.05 1.38 7.30 -51.93 -0.38 1.01 16 51 H 0.04 1.09 7.59 -51.93 -0.39 0.70 16 52 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -32.76 394.74 -11.29 -44.06 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.42 Total: 1.93 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.53 Total: -7.73 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.35 Total: -51.08 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.76 -11.29 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.368 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds