Wall clock time and date at job start Wed Apr 1 2020 01:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38228 * 120.00231 * 2 1 4 4 C 1.38232 * 120.00038 * 180.26756 * 3 2 1 5 5 C 1.38237 * 119.99730 * 359.74854 * 4 3 2 6 6 C 1.38227 * 120.00273 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00026 * 179.97438 * 6 5 4 8 8 C 1.38232 * 119.99997 * 0.02562 * 6 5 4 9 9 C 1.50699 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.46845 * 89.99850 * 9 8 6 11 11 O 1.21283 * 119.99840 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99699 * 180.02562 * 10 9 8 13 13 C 1.46798 * 119.57997 * 0.02562 * 12 10 9 14 14 C 1.53462 * 107.59015 * 232.03522 * 13 12 10 15 15 C 1.52741 * 108.43820 * 301.90877 * 14 13 12 16 16 C 1.53016 * 110.79926 * 63.77491 * 15 14 13 17 17 H 1.09003 * 111.38352 * 69.73310 * 16 15 14 18 18 C 1.45123 * 119.57355 * 180.02562 * 12 10 9 19 19 H 1.09001 * 110.60924 * 11.49039 * 18 12 10 20 20 C 1.54421 * 111.59908 * 248.67625 * 18 12 10 21 21 C 1.54572 * 102.44666 * 203.42607 * 20 18 12 22 22 N 1.47111 * 107.25419 * 21.66821 * 21 20 18 23 23 C 1.36943 * 125.76713 * 182.62041 * 22 21 20 24 24 H 1.07997 * 119.99783 * 179.97438 * 23 22 21 25 25 C 1.38815 * 119.99739 * 359.97243 * 23 22 21 26 26 N 1.31614 * 120.00130 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99816 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47243 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47165 * 119.99746 * 27 25 23 30 30 H 1.48503 * 109.47065 * 240.00272 * 27 25 23 31 31 H 1.08999 * 109.47393 * 270.23801 * 1 2 3 32 32 H 1.09007 * 109.46983 * 30.23779 * 1 2 3 33 33 H 1.09001 * 109.47149 * 150.23614 * 1 2 3 34 34 H 1.08005 * 120.00193 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.00281 * 179.71967 * 4 3 2 36 36 H 1.08003 * 119.99785 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47204 * 270.02226 * 7 6 5 38 38 H 1.08997 * 109.47072 * 30.02156 * 7 6 5 39 39 H 1.08996 * 109.46926 * 150.02585 * 7 6 5 40 40 H 1.09000 * 109.47314 * 330.00114 * 9 8 6 41 41 H 1.08996 * 109.47784 * 209.99931 * 9 8 6 42 42 H 1.09000 * 109.83144 * 351.55556 * 13 12 10 43 43 H 1.08996 * 109.83810 * 112.50709 * 13 12 10 44 44 H 1.09001 * 109.63823 * 182.23007 * 14 13 12 45 45 H 1.08994 * 109.64495 * 61.59991 * 14 13 12 46 46 H 1.08993 * 109.21439 * 303.43223 * 15 14 13 47 47 H 1.09001 * 109.20729 * 184.11273 * 15 14 13 48 48 H 1.09003 * 110.81629 * 85.18973 * 20 18 12 49 49 H 1.08994 * 110.81541 * 321.66233 * 20 18 12 50 50 H 1.09004 * 109.88577 * 262.25291 * 21 20 18 51 51 H 1.09000 * 110.01515 * 141.15511 * 21 20 18 52 52 H 0.97000 * 119.99951 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0056 5 6 4.2716 -0.0002 -0.0059 6 6 3.5804 -1.1973 -0.0001 7 6 4.3339 -2.5024 -0.0011 8 6 2.1981 -1.1972 0.0055 9 6 1.4445 -2.5022 0.0112 10 6 1.1992 -2.9343 1.4340 11 8 1.5966 -2.2496 2.3528 12 7 0.5380 -4.0816 1.6853 13 6 0.0615 -4.9034 0.5661 14 6 -1.4299 -5.1817 0.7972 15 6 -1.5874 -5.8826 2.1451 16 6 -1.1407 -4.9687 3.2882 17 1 -1.8328 -4.1381 3.4267 18 6 0.3063 -4.4886 3.0589 19 1 0.5423 -3.6752 3.7451 20 6 1.1269 -5.7442 3.4258 21 6 0.3210 -6.3361 4.6046 22 7 -1.0483 -5.8075 4.5061 23 6 -2.0652 -6.0492 5.3908 24 1 -3.0387 -5.6111 5.2274 25 6 -1.8446 -6.8575 6.4977 26 7 -0.6584 -7.3918 6.6965 27 14 -3.2319 -7.1878 7.7042 28 1 -4.4566 -6.4765 7.2573 29 1 -3.5001 -8.6472 7.7626 30 1 -2.8419 -6.7017 9.0521 31 1 -0.3634 0.0043 1.0276 32 1 -0.3633 0.8879 -0.5176 33 1 -0.3633 -0.8921 -0.5102 34 1 1.6582 2.1325 -0.0004 35 1 4.1205 2.1323 -0.0102 36 1 5.3516 -0.0002 -0.0107 37 1 4.5110 -2.8190 -1.0290 38 1 5.2886 -2.3711 0.5082 39 1 3.7471 -3.2610 0.5167 40 1 2.0315 -3.2630 -0.5034 41 1 0.4901 -2.3730 -0.4990 42 1 0.1963 -4.3648 -0.3718 43 1 0.6128 -5.8432 0.5363 44 1 -1.8099 -5.8247 0.0033 45 1 -1.9810 -4.2413 0.8065 46 1 -0.9807 -6.7880 2.1517 47 1 -2.6338 -6.1518 2.2891 48 1 2.1330 -5.4702 3.7435 49 1 1.1603 -6.4429 2.5900 50 1 0.7691 -6.0310 5.5503 51 1 0.3044 -7.4238 4.5362 52 1 -0.5042 -7.9563 7.4701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049502855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:00 Heat of formation + Delta-G solvation = -5.018246 kcal Electronic energy + Delta-G solvation = -31172.878688 eV Core-core repulsion = 27329.696263 eV Total energy + Delta-G solvation = -3843.182425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.60 seconds Orbital eigenvalues (eV) -41.83289 -40.60561 -39.16660 -36.74518 -34.51130 -34.44857 -33.92338 -33.67816 -31.05964 -30.09177 -29.42786 -27.61184 -27.50089 -26.26076 -25.70400 -23.33202 -22.55555 -21.93646 -21.56896 -20.90518 -19.43606 -18.75373 -18.36139 -17.23273 -17.17698 -16.81295 -16.64737 -16.10092 -15.80510 -15.49577 -15.22827 -15.02351 -14.98774 -14.55850 -14.27593 -14.04265 -14.02087 -13.84689 -13.77752 -13.73519 -13.51774 -13.51444 -13.17682 -13.07854 -12.83264 -12.62892 -12.48509 -12.38657 -12.34249 -12.26202 -12.03497 -11.94045 -11.74763 -11.66934 -11.62175 -11.50365 -11.17880 -10.79191 -10.73371 -9.56956 -9.45229 -9.38325 -8.89947 -7.85402 -5.21204 0.45770 0.52421 1.43881 1.45383 1.55263 1.66593 2.01647 2.48768 2.86056 3.32518 3.54287 3.62409 3.74231 3.87298 3.93111 4.00190 4.05337 4.09033 4.12752 4.16140 4.20605 4.24177 4.37939 4.44145 4.48550 4.58179 4.59156 4.63766 4.67697 4.77365 4.80729 4.82942 4.84750 4.86005 4.87099 4.98480 5.00651 5.03073 5.10611 5.21717 5.32058 5.38032 5.38755 5.40634 5.56245 5.63324 5.63825 5.66306 5.69834 5.73027 5.78964 6.17216 6.19904 6.50666 7.07816 7.25126 7.74293 8.39795 9.24815 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002731 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.836350 B =10251.980094 C =10315.216164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.115 4.115 8 C -0.085 4.085 9 C -0.096 4.096 10 C 0.512 3.488 11 O -0.582 6.582 12 N -0.592 5.592 13 C 0.100 3.900 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.151 3.849 17 H 0.046 0.954 18 C 0.149 3.851 19 H 0.062 0.938 20 C -0.133 4.133 21 C 0.192 3.808 22 N -0.619 5.619 23 C -0.234 4.234 24 H 0.081 0.919 25 C -0.067 4.067 26 N -0.952 5.952 27 Si 0.977 3.023 28 H -0.265 1.265 29 H -0.290 1.290 30 H -0.296 1.296 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.006 0.994 51 H 0.012 0.988 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 11.529 -23.635 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.160 4.160 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.084 4.084 7 C -0.171 4.171 8 C -0.085 4.085 9 C -0.135 4.135 10 C 0.301 3.699 11 O -0.462 6.462 12 N -0.324 5.324 13 C -0.021 4.021 14 C -0.161 4.161 15 C -0.159 4.159 16 C 0.044 3.956 17 H 0.064 0.936 18 C 0.043 3.957 19 H 0.081 0.919 20 C -0.172 4.172 21 C 0.067 3.933 22 N -0.344 5.344 23 C -0.363 4.363 24 H 0.099 0.901 25 C -0.260 4.260 26 N -0.601 5.601 27 Si 0.806 3.194 28 H -0.190 1.190 29 H -0.217 1.217 30 H -0.223 1.223 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.025 0.975 51 H 0.030 0.970 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.165 11.754 -22.959 26.520 hybrid contribution -0.536 -0.429 1.872 1.994 sum 5.629 11.325 -21.087 24.589 Atomic orbital electron populations 1.20883 0.90427 1.04114 1.01877 1.20014 0.96887 0.92924 0.98677 1.21242 0.94789 0.97842 1.02095 1.21392 0.94459 0.98712 0.99391 1.21239 1.00560 0.92042 1.02090 1.20025 0.93326 0.96484 0.98601 1.20845 0.99641 0.93361 1.03263 1.19225 0.93208 0.93892 1.02217 1.20831 1.03765 0.96347 0.92572 1.21217 0.76682 0.79721 0.92235 1.90705 1.52260 1.54789 1.48421 1.47661 1.55829 1.22714 1.06149 1.22240 0.94710 0.96293 0.88866 1.21898 0.96113 1.01504 0.96629 1.21901 1.00582 0.98642 0.94784 1.21543 0.93964 0.92652 0.87396 0.93568 1.21129 0.95195 0.95938 0.83446 0.91925 1.22911 0.98161 0.97156 0.98958 1.20835 0.83821 0.95100 0.93587 1.44980 1.08379 1.55826 1.25247 1.19430 0.91030 1.24230 1.01610 0.90098 1.25631 0.99351 1.00467 1.00539 1.70187 1.22280 1.37671 1.29955 0.85026 0.78774 0.77234 0.78403 1.18958 1.21728 1.22287 0.92843 0.89844 0.89968 0.84745 0.84229 0.84704 0.88775 0.91310 0.92669 0.85358 0.85163 0.85598 0.90106 0.87779 0.91252 0.93073 0.93533 0.91904 0.89729 0.97538 0.96985 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.60 71.24 0.68 -1.43 16 2 C -0.08 -1.88 5.88 -19.87 -0.12 -2.00 16 3 C -0.14 -2.93 9.70 22.27 0.22 -2.71 16 4 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 5 C -0.14 -2.90 9.70 22.27 0.22 -2.68 16 6 C -0.08 -1.86 5.88 -19.87 -0.12 -1.98 16 7 C -0.11 -2.05 9.19 71.24 0.65 -1.39 16 8 C -0.08 -1.92 4.37 -19.87 -0.09 -2.01 16 9 C -0.10 -1.78 3.06 29.10 0.09 -1.69 16 10 C 0.51 14.55 7.25 87.66 0.64 15.18 16 11 O -0.58 -22.82 15.38 -3.04 -0.05 -22.86 16 12 N -0.59 -16.35 2.73 -794.46 -2.17 -18.52 16 13 C 0.10 1.80 6.05 86.48 0.52 2.32 16 14 C -0.12 -2.51 6.11 30.66 0.19 -2.32 16 15 C -0.12 -3.89 5.10 30.51 0.16 -3.74 16 16 C 0.15 6.19 3.59 45.07 0.16 6.35 16 17 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 18 C 0.15 5.63 3.08 46.13 0.14 5.77 16 19 H 0.06 2.85 7.00 -2.39 -0.02 2.84 16 20 C -0.13 -5.18 6.08 31.61 0.19 -4.98 16 21 C 0.19 9.82 5.19 86.80 0.45 10.27 16 22 N -0.62 -32.16 2.91 -667.24 -1.94 -34.11 16 23 C -0.23 -13.28 10.29 84.03 0.87 -12.41 16 24 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 25 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 26 N -0.95 -58.46 10.33 21.65 0.22 -58.24 16 27 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 30 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16 33 H 0.08 1.17 5.94 -2.39 -0.01 1.16 16 34 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 39 H 0.05 1.11 6.37 -2.39 -0.02 1.09 16 40 H 0.13 1.67 6.49 -2.39 -0.02 1.65 16 41 H 0.13 1.67 5.41 -2.39 -0.01 1.66 16 42 H 0.13 1.21 5.82 -2.39 -0.01 1.20 16 43 H 0.08 1.37 7.53 -2.39 -0.02 1.35 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.05 1.79 7.12 -2.39 -0.02 1.78 16 47 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.08 2.86 6.81 -2.39 -0.02 2.84 16 50 H 0.01 0.37 7.30 -2.38 -0.02 0.36 16 51 H 0.01 0.67 7.59 -2.39 -0.02 0.65 16 52 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -77.69 394.74 4.54 -73.15 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.91 Total: 16.89 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.54 Total: -5.02 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.89 Total: -110.86 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.69 4.54 -73.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.131 kcal (2) G-P(sol) polarization free energy of solvation -77.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.60 seconds