Wall clock time and date at job start Wed Apr 1 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99616 * 2 1 4 4 C 1.38241 * 119.99823 * 180.22698 * 3 2 1 5 5 C 1.38242 * 119.99816 * 359.81280 * 4 3 2 6 6 C 1.38238 * 119.99978 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99797 * 180.02562 * 6 5 4 8 8 C 1.38227 * 120.00116 * 179.78890 * 2 1 3 9 9 C 1.50704 * 120.00133 * 0.02562 * 8 2 1 10 10 C 1.50704 * 109.47028 * 269.72929 * 9 8 2 11 11 O 1.21279 * 119.99966 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00059 * 180.02562 * 10 9 8 13 13 C 1.47855 * 122.22408 * 0.02562 * 12 10 9 14 14 C 1.52716 * 111.06388 * 127.49603 * 13 12 10 15 15 C 1.53871 * 111.51957 * 48.53257 * 14 13 12 16 16 C 1.51087 * 108.01336 * 303.24983 * 15 14 13 17 17 H 1.08995 * 107.89630 * 307.94888 * 16 15 14 18 18 C 1.45724 * 122.23206 * 180.02562 * 12 10 9 19 19 H 1.08992 * 111.07479 * 118.60824 * 18 12 10 20 20 C 1.53441 * 116.36199 * 350.10896 * 18 12 10 21 21 C 1.55466 * 101.67139 * 206.45850 * 20 18 12 22 22 N 1.45020 * 119.78670 * 182.98466 * 16 15 14 23 23 C 1.36929 * 126.56335 * 28.67475 * 22 16 15 24 24 H 1.08006 * 120.00272 * 4.09173 * 23 22 16 25 25 C 1.38812 * 120.00348 * 184.08431 * 23 22 16 26 26 N 1.31627 * 119.99652 * 6.82288 * 25 23 22 27 27 Si 1.86798 * 120.00365 * 186.82408 * 25 23 22 28 28 H 1.48504 * 109.47111 * 265.01407 * 27 25 23 29 29 H 1.48499 * 109.47280 * 25.01429 * 27 25 23 30 30 H 1.48495 * 109.47261 * 145.01644 * 27 25 23 31 31 H 1.08995 * 109.47274 * 270.21128 * 1 2 3 32 32 H 1.09004 * 109.47113 * 30.21022 * 1 2 3 33 33 H 1.08999 * 109.47149 * 150.20729 * 1 2 3 34 34 H 1.07999 * 120.00382 * 0.06649 * 3 2 1 35 35 H 1.07996 * 120.00416 * 179.83860 * 4 3 2 36 36 H 1.07991 * 119.99796 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46767 * 269.97008 * 7 6 5 38 38 H 1.08988 * 109.47576 * 29.97516 * 7 6 5 39 39 H 1.08997 * 109.47133 * 149.98314 * 7 6 5 40 40 H 1.08995 * 109.47338 * 149.72722 * 9 8 2 41 41 H 1.09002 * 109.47057 * 29.72638 * 9 8 2 42 42 H 1.08999 * 109.16076 * 247.90221 * 13 12 10 43 43 H 1.08997 * 109.16385 * 7.08576 * 13 12 10 44 44 H 1.08990 * 109.07359 * 169.05898 * 14 13 12 45 45 H 1.08999 * 109.06907 * 288.07962 * 14 13 12 46 46 H 1.09002 * 109.88478 * 62.52840 * 15 14 13 47 47 H 1.09004 * 109.88652 * 183.61582 * 15 14 13 48 48 H 1.09000 * 110.98212 * 88.36231 * 20 18 12 49 49 H 1.09001 * 111.01994 * 324.56839 * 20 18 12 50 50 H 1.09007 * 109.95988 * 263.22195 * 21 20 18 51 51 H 1.09000 * 109.98898 * 141.99963 * 21 20 18 52 52 H 0.96994 * 119.99736 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0047 5 6 4.2718 0.0001 -0.0056 6 6 3.5806 -1.1971 -0.0011 7 6 4.3341 -2.5022 -0.0014 8 6 2.1982 -1.1971 0.0044 9 6 1.4447 -2.5022 0.0086 10 6 1.1988 -2.9357 1.4309 11 8 1.5967 -2.2524 2.3505 12 7 0.5378 -4.0832 1.6809 13 6 0.0329 -4.9542 0.5981 14 6 0.5087 -6.3934 0.7844 15 6 0.2692 -6.8853 2.2226 16 6 0.9716 -5.9353 3.1644 17 1 2.0049 -5.8370 2.8319 18 6 0.2729 -4.5481 3.0364 19 1 -0.7984 -4.6194 3.2240 20 6 0.9839 -3.7926 4.1669 21 6 1.0648 -4.8834 5.2718 22 7 0.9650 -6.1984 4.5905 23 6 0.8867 -7.4255 5.1932 24 1 0.8881 -8.3232 4.5927 25 6 0.8056 -7.5157 6.5760 26 7 0.6687 -6.4248 7.2997 27 14 0.8910 -9.1851 7.4098 28 1 -0.4850 -9.6891 7.6505 29 1 1.6214 -10.1381 6.5360 30 1 1.6043 -9.0553 8.7057 31 1 -0.3633 0.0038 1.0276 32 1 -0.3633 0.8881 -0.5171 33 1 -0.3633 -0.8918 -0.5106 34 1 1.6581 2.1325 0.0011 35 1 4.1205 2.1325 -0.0074 36 1 5.3517 0.0001 -0.0089 37 1 4.5118 -2.8188 -1.0292 38 1 5.2884 -2.3709 0.5084 39 1 3.7470 -3.2608 0.5160 40 1 2.0319 -3.2624 -0.5065 41 1 0.4904 -2.3725 -0.5018 42 1 -1.0569 -4.9345 0.6018 43 1 0.3933 -4.5795 -0.3599 44 1 -0.0314 -7.0395 0.0925 45 1 1.5747 -6.4474 0.5635 46 1 -0.7988 -6.8876 2.4406 47 1 0.6754 -7.8896 2.3434 48 1 0.3904 -2.9416 4.5012 49 1 1.9798 -3.4745 3.8587 50 1 0.2395 -4.7639 5.9738 51 1 2.0157 -4.8093 5.7995 52 1 0.6124 -6.4878 8.2660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049502857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:16 Heat of formation + Delta-G solvation = 18.439428 kcal Electronic energy + Delta-G solvation = -31378.072181 eV Core-core repulsion = 27535.906957 eV Total energy + Delta-G solvation = -3842.165224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.60161 -39.51765 -37.56929 -35.39992 -33.64492 -33.41244 -32.56931 -32.10153 -29.47464 -28.53724 -28.15888 -26.70810 -26.66543 -24.47037 -24.25515 -21.59114 -21.47689 -20.74809 -20.45243 -19.63012 -18.63994 -16.87545 -16.31790 -16.28748 -16.10056 -15.50732 -15.00892 -14.66086 -14.55504 -14.26229 -14.13378 -13.89200 -13.52441 -13.36652 -13.27266 -13.01582 -12.98928 -12.89944 -12.76925 -12.42218 -12.29775 -12.17918 -11.81093 -11.66982 -11.59065 -11.52480 -11.14249 -10.94503 -10.89556 -10.81613 -10.69696 -10.48583 -10.40028 -10.10030 -9.94981 -9.78921 -9.61887 -9.00630 -8.61608 -8.55023 -8.52695 -8.17813 -6.80201 -5.66357 -3.03754 1.32249 1.36919 2.88848 3.20092 3.40755 3.46279 3.48435 3.72920 4.50499 4.55443 4.69540 4.71597 4.82608 4.88928 4.92288 5.00997 5.09924 5.22099 5.27870 5.29548 5.35301 5.38141 5.45962 5.52969 5.56165 5.59870 5.62004 5.62879 5.68789 5.78265 5.78684 5.84289 5.88976 6.02107 6.10046 6.12224 6.18062 6.28855 6.32225 6.40764 6.46001 6.50915 6.59773 6.64466 6.74627 6.82611 6.92614 7.01186 7.21825 7.55698 7.68734 7.77226 7.87467 8.28800 8.50799 9.20340 9.85134 10.53548 11.42677 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002935 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.762784 B = 9537.811435 C = 9935.839054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.066 4.066 7 C -0.118 4.118 8 C -0.062 4.062 9 C -0.108 4.108 10 C 0.518 3.482 11 O -0.520 6.520 12 N -0.602 5.602 13 C 0.110 3.890 14 C -0.128 4.128 15 C -0.116 4.116 16 C 0.160 3.840 17 H 0.015 0.985 18 C 0.117 3.883 19 H 0.078 0.922 20 C -0.126 4.126 21 C 0.165 3.835 22 N -0.591 5.591 23 C -0.226 4.226 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.917 5.917 27 Si 0.909 3.091 28 H -0.290 1.290 29 H -0.281 1.281 30 H -0.290 1.290 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.029 0.971 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.898 10.645 -20.661 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.174 4.174 8 C -0.063 4.063 9 C -0.148 4.148 10 C 0.305 3.695 11 O -0.396 6.396 12 N -0.336 5.336 13 C -0.013 4.013 14 C -0.167 4.167 15 C -0.155 4.155 16 C 0.050 3.950 17 H 0.033 0.967 18 C 0.013 3.987 19 H 0.095 0.905 20 C -0.165 4.165 21 C 0.040 3.960 22 N -0.315 5.315 23 C -0.354 4.354 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.565 5.565 27 Si 0.740 3.260 28 H -0.217 1.217 29 H -0.207 1.207 30 H -0.217 1.217 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.047 0.953 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.118 10.934 -19.920 22.752 hybrid contribution 0.025 -0.923 0.529 1.064 sum 1.143 10.012 -19.391 21.853 Atomic orbital electron populations 1.20860 0.91502 1.02311 1.02728 1.19658 0.95804 0.92565 0.98783 1.20909 0.94245 0.97172 1.02226 1.21050 0.94285 0.97784 1.00219 1.20934 0.99527 0.91963 1.02070 1.19689 0.92964 0.95445 0.98495 1.20832 1.00183 0.94524 1.01870 1.18968 0.92736 0.93184 1.01373 1.20813 1.01876 0.96145 0.95947 1.20277 0.78015 0.80451 0.90726 1.90730 1.49934 1.53226 1.45709 1.48033 1.56437 1.21514 1.07625 1.21701 0.99021 0.90803 0.89777 1.21879 1.01718 0.94971 0.98158 1.21422 1.01194 1.00032 0.92853 1.20771 0.95726 0.91731 0.86723 0.96741 1.22437 0.99082 0.96569 0.80652 0.90454 1.22904 1.01040 0.97587 0.94955 1.21863 1.01018 0.81204 0.91890 1.44096 1.85841 1.03030 0.98532 1.18981 1.43657 0.83092 0.89702 0.90431 1.24809 1.02179 0.97139 0.96274 1.69941 1.55885 1.25720 1.04911 0.86145 0.77495 0.83257 0.79126 1.21696 1.20696 1.21674 0.90798 0.91679 0.91568 0.86354 0.86345 0.86308 0.91240 0.91373 0.91415 0.88308 0.88184 0.91549 0.90484 0.90886 0.91884 0.91833 0.91585 0.92202 0.90217 0.91214 0.95313 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.60 36.01 0.35 -0.82 16 2 C -0.07 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.13 -1.43 9.70 -39.58 -0.38 -1.81 16 4 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 5 C -0.13 -1.45 9.70 -39.58 -0.38 -1.84 16 6 C -0.07 -0.82 5.88 -104.62 -0.62 -1.43 16 7 C -0.12 -1.28 9.19 36.00 0.33 -0.95 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.11 -1.22 3.16 -29.03 -0.09 -1.31 16 10 C 0.52 7.96 7.28 -10.99 -0.08 7.88 16 11 O -0.52 -10.06 12.88 5.56 0.07 -9.98 16 12 N -0.60 -9.14 2.93 -163.77 -0.48 -9.62 16 13 C 0.11 1.23 6.32 -3.44 -0.02 1.21 16 14 C -0.13 -1.55 5.95 -26.42 -0.16 -1.70 16 15 C -0.12 -1.96 5.45 -27.24 -0.15 -2.11 16 16 C 0.16 3.32 2.63 -68.17 -0.18 3.14 16 17 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 18 C 0.12 2.23 3.31 -66.60 -0.22 2.01 16 19 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 20 C -0.13 -2.73 4.97 -25.19 -0.13 -2.86 16 21 C 0.16 4.21 5.59 -1.66 -0.01 4.20 16 22 N -0.59 -15.20 3.35 -163.02 -0.55 -15.75 16 23 C -0.23 -6.25 9.94 -15.06 -0.15 -6.40 16 24 H 0.08 2.06 7.44 -52.48 -0.39 1.67 16 25 C -0.01 -0.21 5.46 -17.43 -0.10 -0.31 16 26 N -0.92 -27.27 10.54 55.49 0.58 -26.69 16 27 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.07 0.57 5.94 -51.93 -0.31 0.27 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.71 8.08 -51.94 -0.42 0.29 16 39 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 40 H 0.10 0.94 6.31 -51.93 -0.33 0.62 16 41 H 0.10 0.90 5.81 -51.93 -0.30 0.60 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 47 H 0.07 1.16 7.79 -51.93 -0.40 0.76 16 48 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.08 1.81 6.26 -51.93 -0.33 1.48 16 50 H 0.07 1.95 6.77 -51.92 -0.35 1.60 16 51 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 52 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -33.20 393.83 -11.44 -44.64 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.52 Total: 1.75 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.45 Total: -7.43 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.44 Total: -52.05 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.20 -11.44 -44.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.077 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds