Wall clock time and date at job start Wed Apr 1 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99616 * 2 1 4 4 C 1.38241 * 119.99823 * 180.22698 * 3 2 1 5 5 C 1.38242 * 119.99816 * 359.81280 * 4 3 2 6 6 C 1.38238 * 119.99978 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99797 * 180.02562 * 6 5 4 8 8 C 1.38227 * 120.00116 * 179.78890 * 2 1 3 9 9 C 1.50704 * 120.00133 * 0.02562 * 8 2 1 10 10 C 1.50704 * 109.47028 * 269.72929 * 9 8 2 11 11 O 1.21279 * 119.99966 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00059 * 180.02562 * 10 9 8 13 13 C 1.47855 * 122.22408 * 0.02562 * 12 10 9 14 14 C 1.52716 * 111.06388 * 127.49603 * 13 12 10 15 15 C 1.53871 * 111.51957 * 48.53257 * 14 13 12 16 16 C 1.51087 * 108.01336 * 303.24983 * 15 14 13 17 17 H 1.08995 * 107.89630 * 307.94888 * 16 15 14 18 18 C 1.45724 * 122.23206 * 180.02562 * 12 10 9 19 19 H 1.08992 * 111.07479 * 118.60824 * 18 12 10 20 20 C 1.53441 * 116.36199 * 350.10896 * 18 12 10 21 21 C 1.55466 * 101.67139 * 206.45850 * 20 18 12 22 22 N 1.45020 * 119.78670 * 182.98466 * 16 15 14 23 23 C 1.36929 * 126.56335 * 28.67475 * 22 16 15 24 24 H 1.08006 * 120.00272 * 4.09173 * 23 22 16 25 25 C 1.38812 * 120.00348 * 184.08431 * 23 22 16 26 26 N 1.31627 * 119.99652 * 6.82288 * 25 23 22 27 27 Si 1.86798 * 120.00365 * 186.82408 * 25 23 22 28 28 H 1.48504 * 109.47111 * 265.01407 * 27 25 23 29 29 H 1.48499 * 109.47280 * 25.01429 * 27 25 23 30 30 H 1.48495 * 109.47261 * 145.01644 * 27 25 23 31 31 H 1.08995 * 109.47274 * 270.21128 * 1 2 3 32 32 H 1.09004 * 109.47113 * 30.21022 * 1 2 3 33 33 H 1.08999 * 109.47149 * 150.20729 * 1 2 3 34 34 H 1.07999 * 120.00382 * 0.06649 * 3 2 1 35 35 H 1.07996 * 120.00416 * 179.83860 * 4 3 2 36 36 H 1.07991 * 119.99796 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46767 * 269.97008 * 7 6 5 38 38 H 1.08988 * 109.47576 * 29.97516 * 7 6 5 39 39 H 1.08997 * 109.47133 * 149.98314 * 7 6 5 40 40 H 1.08995 * 109.47338 * 149.72722 * 9 8 2 41 41 H 1.09002 * 109.47057 * 29.72638 * 9 8 2 42 42 H 1.08999 * 109.16076 * 247.90221 * 13 12 10 43 43 H 1.08997 * 109.16385 * 7.08576 * 13 12 10 44 44 H 1.08990 * 109.07359 * 169.05898 * 14 13 12 45 45 H 1.08999 * 109.06907 * 288.07962 * 14 13 12 46 46 H 1.09002 * 109.88478 * 62.52840 * 15 14 13 47 47 H 1.09004 * 109.88652 * 183.61582 * 15 14 13 48 48 H 1.09000 * 110.98212 * 88.36231 * 20 18 12 49 49 H 1.09001 * 111.01994 * 324.56839 * 20 18 12 50 50 H 1.09007 * 109.95988 * 263.22195 * 21 20 18 51 51 H 1.09000 * 109.98898 * 141.99963 * 21 20 18 52 52 H 0.96994 * 119.99736 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0047 5 6 4.2718 0.0001 -0.0056 6 6 3.5806 -1.1971 -0.0011 7 6 4.3341 -2.5022 -0.0014 8 6 2.1982 -1.1971 0.0044 9 6 1.4447 -2.5022 0.0086 10 6 1.1988 -2.9357 1.4309 11 8 1.5967 -2.2524 2.3505 12 7 0.5378 -4.0832 1.6809 13 6 0.0329 -4.9542 0.5981 14 6 0.5087 -6.3934 0.7844 15 6 0.2692 -6.8853 2.2226 16 6 0.9716 -5.9353 3.1644 17 1 2.0049 -5.8370 2.8319 18 6 0.2729 -4.5481 3.0364 19 1 -0.7984 -4.6194 3.2240 20 6 0.9839 -3.7926 4.1669 21 6 1.0648 -4.8834 5.2718 22 7 0.9650 -6.1984 4.5905 23 6 0.8867 -7.4255 5.1932 24 1 0.8881 -8.3232 4.5927 25 6 0.8056 -7.5157 6.5760 26 7 0.6687 -6.4248 7.2997 27 14 0.8910 -9.1851 7.4098 28 1 -0.4850 -9.6891 7.6505 29 1 1.6214 -10.1381 6.5360 30 1 1.6043 -9.0553 8.7057 31 1 -0.3633 0.0038 1.0276 32 1 -0.3633 0.8881 -0.5171 33 1 -0.3633 -0.8918 -0.5106 34 1 1.6581 2.1325 0.0011 35 1 4.1205 2.1325 -0.0074 36 1 5.3517 0.0001 -0.0089 37 1 4.5118 -2.8188 -1.0292 38 1 5.2884 -2.3709 0.5084 39 1 3.7470 -3.2608 0.5160 40 1 2.0319 -3.2624 -0.5065 41 1 0.4904 -2.3725 -0.5018 42 1 -1.0569 -4.9345 0.6018 43 1 0.3933 -4.5795 -0.3599 44 1 -0.0314 -7.0395 0.0925 45 1 1.5747 -6.4474 0.5635 46 1 -0.7988 -6.8876 2.4406 47 1 0.6754 -7.8896 2.3434 48 1 0.3904 -2.9416 4.5012 49 1 1.9798 -3.4745 3.8587 50 1 0.2395 -4.7639 5.9738 51 1 2.0157 -4.8093 5.7995 52 1 0.6124 -6.4878 8.2660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049502857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:11 Heat of formation + Delta-G solvation = 0.431116 kcal Electronic energy + Delta-G solvation = -31378.853080 eV Core-core repulsion = 27535.906957 eV Total energy + Delta-G solvation = -3842.946123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -41.80313 -40.57851 -38.97495 -36.89459 -34.55584 -34.45380 -34.00739 -33.74982 -31.07485 -29.88134 -29.47349 -27.61881 -27.50498 -26.36287 -25.63588 -22.87132 -22.80595 -21.84551 -21.57275 -21.29697 -19.85636 -18.62568 -17.43882 -17.30249 -17.22647 -16.93829 -16.56855 -16.13490 -15.74323 -15.54971 -15.33376 -15.16235 -15.01510 -14.54991 -14.31527 -14.13088 -14.04518 -13.82110 -13.79018 -13.72610 -13.52723 -13.37699 -13.19145 -13.11907 -12.91709 -12.69996 -12.48850 -12.38650 -12.20221 -12.11242 -11.97958 -11.77744 -11.74338 -11.70739 -11.65629 -11.56429 -11.38797 -10.77635 -10.36484 -9.50825 -9.44246 -9.38455 -8.90992 -7.82757 -5.23091 0.45999 0.52253 1.44682 1.47072 1.56132 1.72995 2.03682 2.49743 2.85768 3.32712 3.37356 3.64663 3.74691 3.90242 3.96131 4.00438 4.06867 4.11658 4.14105 4.15969 4.23818 4.27721 4.36081 4.43925 4.47405 4.57458 4.59166 4.60014 4.70208 4.75844 4.79667 4.81259 4.84911 4.86855 4.94202 4.99500 5.02683 5.04477 5.12118 5.17869 5.29061 5.31699 5.37736 5.42113 5.49154 5.55484 5.63217 5.65528 5.68927 5.73589 5.79097 6.18588 6.19860 6.59845 7.03523 7.31650 7.74613 8.45040 9.26053 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002935 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.762784 B = 9537.811435 C = 9935.839054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.122 4.122 5 C -0.142 4.142 6 C -0.085 4.085 7 C -0.114 4.114 8 C -0.083 4.083 9 C -0.096 4.096 10 C 0.515 3.485 11 O -0.568 6.568 12 N -0.602 5.602 13 C 0.102 3.898 14 C -0.119 4.119 15 C -0.112 4.112 16 C 0.153 3.847 17 H -0.001 1.001 18 C 0.134 3.866 19 H 0.075 0.925 20 C -0.108 4.108 21 C 0.174 3.826 22 N -0.610 5.610 23 C -0.233 4.233 24 H 0.088 0.912 25 C -0.070 4.070 26 N -0.953 5.953 27 Si 0.979 3.021 28 H -0.284 1.284 29 H -0.266 1.266 30 H -0.298 1.298 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.039 0.961 51 H -0.011 1.011 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 10.075 -24.529 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.158 4.158 4 C -0.140 4.140 5 C -0.160 4.160 6 C -0.085 4.085 7 C -0.171 4.171 8 C -0.083 4.083 9 C -0.135 4.135 10 C 0.304 3.696 11 O -0.447 6.447 12 N -0.335 5.335 13 C -0.018 4.018 14 C -0.158 4.158 15 C -0.151 4.151 16 C 0.045 3.955 17 H 0.016 0.984 18 C 0.028 3.972 19 H 0.093 0.907 20 C -0.147 4.147 21 C 0.049 3.951 22 N -0.335 5.335 23 C -0.362 4.362 24 H 0.106 0.894 25 C -0.263 4.263 26 N -0.602 5.602 27 Si 0.807 3.193 28 H -0.211 1.211 29 H -0.191 1.191 30 H -0.225 1.225 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.057 0.943 51 H 0.007 0.993 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.380 10.344 -23.870 26.017 hybrid contribution 0.317 -0.675 1.723 1.877 sum 0.697 9.669 -22.147 24.176 Atomic orbital electron populations 1.20874 0.90248 1.04057 1.01979 1.20009 0.96979 0.92774 0.98598 1.21246 0.94684 0.97892 1.01994 1.21387 0.94551 0.98589 0.99423 1.21224 1.00485 0.92111 1.02177 1.19994 0.93452 0.96266 0.98767 1.20823 0.99576 0.93544 1.03120 1.19203 0.93057 0.93957 1.02118 1.20806 1.03653 0.96145 0.92880 1.21047 0.76684 0.79692 0.92140 1.90711 1.51713 1.54694 1.47613 1.48126 1.56486 1.22258 1.06666 1.22101 1.00325 0.89489 0.89923 1.21872 1.02638 0.96168 0.95076 1.21416 1.00159 0.98500 0.95003 1.20954 0.95521 0.94241 0.84760 0.98406 1.21969 0.98082 0.94738 0.82386 0.90749 1.22607 1.00863 0.96212 0.94970 1.21567 0.97569 0.83248 0.92710 1.44348 1.85720 1.02417 1.00989 1.19403 1.42340 0.84238 0.90173 0.89384 1.25708 1.02681 1.00773 0.97092 1.70175 1.57485 1.27932 1.04583 0.85059 0.77544 0.79155 0.77570 1.21052 1.19097 1.22484 0.92629 0.89833 0.90037 0.84600 0.84237 0.84934 0.88810 0.91563 0.93012 0.85988 0.85196 0.89613 0.86188 0.86970 0.91699 0.92105 0.92686 0.92333 0.91377 0.94320 0.99275 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.60 71.24 0.68 -1.35 16 2 C -0.08 -1.87 5.88 -19.87 -0.12 -1.98 16 3 C -0.14 -2.93 9.70 22.27 0.22 -2.72 16 4 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 5 C -0.14 -3.11 9.70 22.27 0.22 -2.89 16 6 C -0.08 -2.00 5.88 -19.87 -0.12 -2.11 16 7 C -0.11 -2.33 9.19 71.23 0.65 -1.67 16 8 C -0.08 -1.94 4.37 -19.87 -0.09 -2.03 16 9 C -0.10 -1.86 3.16 29.10 0.09 -1.77 16 10 C 0.51 15.03 7.28 87.66 0.64 15.67 16 11 O -0.57 -22.19 12.88 -3.03 -0.04 -22.23 16 12 N -0.60 -17.03 2.93 -790.45 -2.32 -19.35 16 13 C 0.10 1.81 6.32 86.02 0.54 2.36 16 14 C -0.12 -2.37 5.95 30.79 0.18 -2.19 16 15 C -0.11 -3.59 5.45 30.26 0.17 -3.42 16 16 C 0.15 6.42 2.63 45.63 0.12 6.54 16 17 H 0.00 -0.07 8.05 -2.39 -0.02 -0.09 16 18 C 0.13 5.11 3.31 46.27 0.15 5.26 16 19 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 20 C -0.11 -4.91 4.97 31.59 0.16 -4.75 16 21 C 0.17 9.54 5.59 86.85 0.49 10.02 16 22 N -0.61 -32.63 3.35 -669.66 -2.24 -34.87 16 23 C -0.23 -13.18 9.94 84.03 0.84 -12.35 16 24 H 0.09 4.68 7.44 -2.91 -0.02 4.66 16 25 C -0.07 -4.07 5.46 84.86 0.46 -3.60 16 26 N -0.95 -59.47 10.54 21.65 0.23 -59.24 16 27 Si 0.98 46.51 29.56 68.60 2.03 48.54 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 30 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 33 H 0.08 1.13 5.94 -2.39 -0.01 1.12 16 34 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.13 2.37 8.06 -2.92 -0.02 2.34 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 39 H 0.05 1.21 6.37 -2.39 -0.02 1.19 16 40 H 0.12 1.81 6.31 -2.39 -0.02 1.80 16 41 H 0.13 1.73 5.81 -2.39 -0.01 1.71 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.12 1.19 6.18 -2.39 -0.01 1.17 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 47 H 0.05 1.86 7.79 -2.39 -0.02 1.84 16 48 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.07 3.27 6.26 -2.39 -0.01 3.25 16 50 H 0.04 2.33 6.77 -2.38 -0.02 2.32 16 51 H -0.01 -0.67 8.10 -2.39 -0.02 -0.69 16 52 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -78.29 393.83 4.07 -74.21 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.90 Total: 18.19 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.51 Total: -5.25 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -4.33 Total: -113.46 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.04 Total: -22.23 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.29 4.07 -74.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.645 kcal (2) G-P(sol) polarization free energy of solvation -78.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds