Wall clock time and date at job start Wed Apr 1 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46925 * 2 1 4 4 C 1.38258 * 119.99944 * 265.01970 * 3 2 1 5 5 C 1.38212 * 119.99964 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00191 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99811 * 359.70577 * 6 5 4 8 8 C 1.38210 * 120.00205 * 84.99973 * 3 2 1 9 9 C 1.50702 * 119.99577 * 0.02562 * 8 3 2 10 10 C 1.50701 * 109.47249 * 85.00405 * 9 8 3 11 11 O 1.21284 * 119.99776 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00216 * 179.97438 * 10 9 8 13 13 C 1.47853 * 122.22635 * 359.97167 * 12 10 9 14 14 C 1.52721 * 111.06090 * 232.50501 * 13 12 10 15 15 C 1.53958 * 111.09683 * 311.16218 * 14 13 12 16 16 C 1.51082 * 107.29301 * 57.75060 * 15 14 13 17 17 H 1.09001 * 108.73928 * 50.43118 * 16 15 14 18 18 C 1.45722 * 122.23039 * 179.97438 * 12 10 9 19 19 H 1.09009 * 111.63733 * 240.81577 * 18 12 10 20 20 C 1.53424 * 116.38178 * 9.86007 * 18 12 10 21 21 C 1.55477 * 101.67100 * 152.72999 * 20 18 12 22 22 N 1.45030 * 119.18782 * 175.70282 * 16 15 14 23 23 C 1.36936 * 126.55842 * 330.62114 * 22 16 15 24 24 H 1.08002 * 120.00257 * 359.97438 * 23 22 16 25 25 C 1.38810 * 119.99751 * 179.97438 * 23 22 16 26 26 N 1.31616 * 119.99982 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99801 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46952 * 60.00928 * 27 25 23 29 29 H 1.48508 * 109.46952 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47283 * 300.00326 * 27 25 23 31 31 H 1.09001 * 109.46889 * 60.00312 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47336 * 299.99688 * 1 2 3 34 34 H 1.09005 * 109.47204 * 239.99928 * 2 1 3 35 35 H 1.08999 * 109.47330 * 120.00319 * 2 1 3 36 36 H 1.08005 * 119.99801 * 359.97438 * 4 3 2 37 37 H 1.08004 * 119.99803 * 180.02562 * 5 4 3 38 38 H 1.08000 * 119.99860 * 179.97438 * 6 5 4 39 39 H 1.07997 * 119.99744 * 180.29635 * 7 6 5 40 40 H 1.08994 * 109.47465 * 324.99817 * 9 8 3 41 41 H 1.09006 * 109.46839 * 204.99537 * 9 8 3 42 42 H 1.08992 * 109.16469 * 352.91429 * 13 12 10 43 43 H 1.09000 * 109.16172 * 112.15600 * 13 12 10 44 44 H 1.08999 * 109.07012 * 71.99804 * 14 13 12 45 45 H 1.09007 * 109.06657 * 191.01393 * 14 13 12 46 46 H 1.09001 * 110.25003 * 298.10932 * 15 14 13 47 47 H 1.09012 * 109.56469 * 177.00142 * 15 14 13 48 48 H 1.09005 * 110.98534 * 34.64113 * 20 18 12 49 49 H 1.08998 * 110.98795 * 270.82813 * 20 18 12 50 50 H 1.08998 * 109.95523 * 96.78452 * 21 20 18 51 51 H 1.08995 * 109.95866 * 217.98156 * 21 20 18 52 52 H 0.97002 * 119.99874 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8208 3.3412 -1.1929 6 6 2.9533 4.0276 -0.0001 7 6 2.6197 3.4126 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4344 2.4925 10 6 2.9861 0.6379 2.9874 11 8 4.0159 0.6180 2.3470 12 7 2.8968 -0.0524 4.1414 13 6 1.6663 -0.0623 4.9611 14 6 1.9687 0.3160 6.4095 15 6 3.1600 -0.4917 6.9560 16 6 4.3395 -0.2196 6.0520 17 1 4.4482 0.8584 5.9329 18 6 4.0066 -0.8387 4.6646 19 1 3.7458 -1.8936 4.7519 20 6 5.3594 -0.6593 3.9635 21 6 6.3546 -0.9987 5.1087 22 7 5.6329 -0.7832 6.3880 23 6 6.0986 -1.0643 7.6447 24 1 5.4799 -0.8647 8.5071 25 6 7.3660 -1.6058 7.8102 26 7 8.1202 -1.8487 6.7592 27 14 8.0015 -1.9886 9.5245 28 1 7.1024 -2.9740 10.1771 29 1 9.3712 -2.5546 9.4297 30 1 8.0364 -0.7413 10.3295 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.2576 1.5015 -2.1246 37 1 3.0770 3.8234 -2.1248 38 1 3.3132 5.0459 -0.0002 39 1 2.7186 3.9504 2.1232 40 1 0.9582 0.7681 2.3355 41 1 1.5426 2.1904 3.2322 42 1 0.9543 0.6511 4.5462 43 1 1.2282 -1.0601 4.9368 44 1 2.1966 1.3807 6.4594 45 1 1.0905 0.1109 7.0218 46 1 2.9275 -1.5566 6.9519 47 1 3.3876 -0.1651 7.9709 48 1 5.4902 0.3684 3.6245 49 1 5.4652 -1.3587 3.1342 50 1 6.6716 -2.0386 5.0301 51 1 7.2218 -0.3406 5.0552 52 1 9.0060 -2.2268 6.8749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049550855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:36 Heat of formation + Delta-G solvation = 17.257040 kcal Electronic energy + Delta-G solvation = -31187.667405 eV Core-core repulsion = 27345.450908 eV Total energy + Delta-G solvation = -3842.216496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.57446 -39.47593 -37.58061 -35.39697 -34.40570 -32.78035 -32.55562 -31.97095 -29.64580 -29.07327 -28.27075 -27.46258 -24.49240 -24.37422 -23.86423 -22.17010 -21.48726 -21.03701 -20.35241 -19.64345 -18.69775 -16.84768 -16.52364 -16.16821 -16.06181 -15.66374 -15.16462 -14.82155 -14.64578 -14.22694 -14.09684 -13.91789 -13.72069 -13.54634 -13.43601 -13.19725 -13.05087 -12.85158 -12.40851 -12.28736 -12.16333 -11.92767 -11.89983 -11.78938 -11.53784 -11.39715 -11.11334 -10.88131 -10.82541 -10.76722 -10.67289 -10.51890 -10.41595 -10.09511 -9.95866 -9.81061 -9.58569 -9.04953 -8.78354 -8.60365 -8.52321 -8.17697 -6.80122 -5.67275 -3.01622 1.30864 1.38410 2.87967 3.19454 3.41866 3.46043 3.47674 3.75465 4.51289 4.55339 4.66071 4.69617 4.80553 4.87560 4.90672 5.04770 5.08251 5.14854 5.21771 5.28013 5.30866 5.39122 5.40781 5.46543 5.47290 5.56040 5.62175 5.66373 5.75933 5.78728 5.79285 5.89613 5.93765 6.01899 6.04557 6.10787 6.12824 6.28508 6.31270 6.41679 6.44358 6.47655 6.59116 6.62391 6.74599 6.82231 6.93178 6.98645 7.22798 7.60888 7.68465 7.76209 7.87296 8.27934 8.49754 9.21934 9.85983 10.54678 11.44639 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002863 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.395077 B = 9778.535316 C =10337.430389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.058 4.058 9 C -0.107 4.107 10 C 0.517 3.483 11 O -0.521 6.521 12 N -0.602 5.602 13 C 0.110 3.890 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.159 3.841 17 H 0.017 0.983 18 C 0.116 3.884 19 H 0.078 0.922 20 C -0.129 4.129 21 C 0.172 3.828 22 N -0.593 5.593 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.920 5.920 27 Si 0.910 3.090 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.286 1.286 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.055 0.945 51 H 0.038 0.962 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.047 7.315 -12.481 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.059 4.059 9 C -0.146 4.146 10 C 0.304 3.696 11 O -0.396 6.396 12 N -0.335 5.335 13 C -0.013 4.013 14 C -0.168 4.168 15 C -0.155 4.155 16 C 0.049 3.951 17 H 0.034 0.966 18 C 0.012 3.988 19 H 0.096 0.904 20 C -0.167 4.167 21 C 0.048 3.952 22 N -0.317 5.317 23 C -0.355 4.355 24 H 0.095 0.905 25 C -0.204 4.204 26 N -0.567 5.567 27 Si 0.741 3.259 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.057 0.943 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.261 7.217 -12.741 23.407 hybrid contribution 0.429 -0.190 1.048 1.148 sum -17.831 7.027 -11.694 22.452 Atomic orbital electron populations 1.21766 0.94816 1.01725 1.02029 1.20562 0.95803 0.92972 1.03259 1.19643 0.98460 0.95635 0.92612 1.20953 1.00296 0.95178 0.97281 1.21075 0.99948 0.94859 0.97953 1.21051 1.00675 0.99971 0.92567 1.20978 0.98589 0.94518 0.98157 1.19131 0.99732 0.93887 0.93129 1.20807 0.98074 1.00029 0.95736 1.20294 0.89234 0.79664 0.80365 1.90734 1.30347 1.62622 1.55946 1.48019 1.14912 1.48814 1.21789 1.21709 0.86171 1.01790 0.91642 1.21927 0.99221 1.00866 0.94812 1.21460 0.94233 0.99740 1.00031 1.20769 0.87010 0.95619 0.91661 0.96559 1.22386 0.86445 0.94060 0.95895 0.90386 1.22952 0.93114 1.02827 0.97817 1.21752 0.91787 1.00490 0.81183 1.44091 1.10909 1.73912 1.02826 1.18936 0.98377 1.35507 0.82697 0.90454 1.24802 0.96895 1.01394 0.97263 1.69941 1.10280 1.49273 1.27183 0.86235 0.77968 0.78051 0.83694 1.21206 1.21622 1.21238 0.92555 0.92334 0.92578 0.91034 0.90889 0.86349 0.86369 0.86274 0.86283 0.88162 0.88445 0.90482 0.91559 0.91785 0.90955 0.91725 0.91610 0.90023 0.92238 0.92649 0.94349 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.72 37.16 0.36 -0.80 16 2 C -0.09 -0.92 5.38 -27.88 -0.15 -1.07 16 3 C -0.06 -0.75 5.13 -104.63 -0.54 -1.29 16 4 C -0.12 -1.31 9.68 -39.58 -0.38 -1.69 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 7 C -0.10 -1.25 9.68 -39.58 -0.38 -1.63 16 8 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 9 C -0.11 -1.19 3.58 -29.03 -0.10 -1.29 16 10 C 0.52 7.94 6.89 -10.99 -0.08 7.86 16 11 O -0.52 -10.04 12.86 5.55 0.07 -9.97 16 12 N -0.60 -9.12 2.91 -163.97 -0.48 -9.59 16 13 C 0.11 1.22 6.31 -3.44 -0.02 1.20 16 14 C -0.13 -1.57 5.94 -26.37 -0.16 -1.73 16 15 C -0.12 -1.95 5.44 -27.20 -0.15 -2.10 16 16 C 0.16 3.31 2.60 -68.33 -0.18 3.13 16 17 H 0.02 0.38 8.03 -51.93 -0.42 -0.03 16 18 C 0.12 2.21 3.31 -66.78 -0.22 1.99 16 19 H 0.08 1.51 8.12 -51.92 -0.42 1.09 16 20 C -0.13 -2.78 5.01 -25.20 -0.13 -2.91 16 21 C 0.17 4.42 5.47 -1.65 -0.01 4.41 16 22 N -0.59 -15.31 3.35 -163.19 -0.55 -15.85 16 23 C -0.23 -6.30 9.95 -15.06 -0.15 -6.45 16 24 H 0.08 2.05 7.32 -52.49 -0.38 1.66 16 25 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 26 N -0.92 -27.48 10.46 55.49 0.58 -26.90 16 27 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.07 0.87 6.42 -51.93 -0.33 0.53 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.10 0.91 5.50 -51.93 -0.29 0.62 16 41 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 42 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 47 H 0.07 1.16 7.71 -51.92 -0.40 0.76 16 48 H 0.08 1.86 6.21 -51.93 -0.32 1.54 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 51 H 0.04 1.08 7.81 -51.93 -0.41 0.68 16 52 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -33.16 395.00 -11.69 -44.85 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.62 Total: 1.58 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.63 Total: -7.26 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.44 Total: -52.34 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.16 -11.69 -44.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049550855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.108 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds