Wall clock time and date at job start Wed Apr 1 2020 02:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46925 * 2 1 4 4 C 1.38258 * 119.99944 * 265.01970 * 3 2 1 5 5 C 1.38212 * 119.99964 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00191 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99811 * 359.70577 * 6 5 4 8 8 C 1.38210 * 120.00205 * 84.99973 * 3 2 1 9 9 C 1.50702 * 119.99577 * 0.02562 * 8 3 2 10 10 C 1.50701 * 109.47249 * 85.00405 * 9 8 3 11 11 O 1.21284 * 119.99776 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00216 * 179.97438 * 10 9 8 13 13 C 1.47853 * 122.22635 * 359.97167 * 12 10 9 14 14 C 1.52721 * 111.06090 * 232.50501 * 13 12 10 15 15 C 1.53958 * 111.09683 * 311.16218 * 14 13 12 16 16 C 1.51082 * 107.29301 * 57.75060 * 15 14 13 17 17 H 1.09001 * 108.73928 * 50.43118 * 16 15 14 18 18 C 1.45722 * 122.23039 * 179.97438 * 12 10 9 19 19 H 1.09009 * 111.63733 * 240.81577 * 18 12 10 20 20 C 1.53424 * 116.38178 * 9.86007 * 18 12 10 21 21 C 1.55477 * 101.67100 * 152.72999 * 20 18 12 22 22 N 1.45030 * 119.18782 * 175.70282 * 16 15 14 23 23 C 1.36936 * 126.55842 * 330.62114 * 22 16 15 24 24 H 1.08002 * 120.00257 * 359.97438 * 23 22 16 25 25 C 1.38810 * 119.99751 * 179.97438 * 23 22 16 26 26 N 1.31616 * 119.99982 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99801 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46952 * 60.00928 * 27 25 23 29 29 H 1.48508 * 109.46952 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47283 * 300.00326 * 27 25 23 31 31 H 1.09001 * 109.46889 * 60.00312 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47336 * 299.99688 * 1 2 3 34 34 H 1.09005 * 109.47204 * 239.99928 * 2 1 3 35 35 H 1.08999 * 109.47330 * 120.00319 * 2 1 3 36 36 H 1.08005 * 119.99801 * 359.97438 * 4 3 2 37 37 H 1.08004 * 119.99803 * 180.02562 * 5 4 3 38 38 H 1.08000 * 119.99860 * 179.97438 * 6 5 4 39 39 H 1.07997 * 119.99744 * 180.29635 * 7 6 5 40 40 H 1.08994 * 109.47465 * 324.99817 * 9 8 3 41 41 H 1.09006 * 109.46839 * 204.99537 * 9 8 3 42 42 H 1.08992 * 109.16469 * 352.91429 * 13 12 10 43 43 H 1.09000 * 109.16172 * 112.15600 * 13 12 10 44 44 H 1.08999 * 109.07012 * 71.99804 * 14 13 12 45 45 H 1.09007 * 109.06657 * 191.01393 * 14 13 12 46 46 H 1.09001 * 110.25003 * 298.10932 * 15 14 13 47 47 H 1.09012 * 109.56469 * 177.00142 * 15 14 13 48 48 H 1.09005 * 110.98534 * 34.64113 * 20 18 12 49 49 H 1.08998 * 110.98795 * 270.82813 * 20 18 12 50 50 H 1.08998 * 109.95523 * 96.78452 * 21 20 18 51 51 H 1.08995 * 109.95866 * 217.98156 * 21 20 18 52 52 H 0.97002 * 119.99874 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8208 3.3412 -1.1929 6 6 2.9533 4.0276 -0.0001 7 6 2.6197 3.4126 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4344 2.4925 10 6 2.9861 0.6379 2.9874 11 8 4.0159 0.6180 2.3470 12 7 2.8968 -0.0524 4.1414 13 6 1.6663 -0.0623 4.9611 14 6 1.9687 0.3160 6.4095 15 6 3.1600 -0.4917 6.9560 16 6 4.3395 -0.2196 6.0520 17 1 4.4482 0.8584 5.9329 18 6 4.0066 -0.8387 4.6646 19 1 3.7458 -1.8936 4.7519 20 6 5.3594 -0.6593 3.9635 21 6 6.3546 -0.9987 5.1087 22 7 5.6329 -0.7832 6.3880 23 6 6.0986 -1.0643 7.6447 24 1 5.4799 -0.8647 8.5071 25 6 7.3660 -1.6058 7.8102 26 7 8.1202 -1.8487 6.7592 27 14 8.0015 -1.9886 9.5245 28 1 7.1024 -2.9740 10.1771 29 1 9.3712 -2.5546 9.4297 30 1 8.0364 -0.7413 10.3295 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.2576 1.5015 -2.1246 37 1 3.0770 3.8234 -2.1248 38 1 3.3132 5.0459 -0.0002 39 1 2.7186 3.9504 2.1232 40 1 0.9582 0.7681 2.3355 41 1 1.5426 2.1904 3.2322 42 1 0.9543 0.6511 4.5462 43 1 1.2282 -1.0601 4.9368 44 1 2.1966 1.3807 6.4594 45 1 1.0905 0.1109 7.0218 46 1 2.9275 -1.5566 6.9519 47 1 3.3876 -0.1651 7.9709 48 1 5.4902 0.3684 3.6245 49 1 5.4652 -1.3587 3.1342 50 1 6.6716 -2.0386 5.0301 51 1 7.2218 -0.3406 5.0552 52 1 9.0060 -2.2268 6.8749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049550855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:35 Heat of formation + Delta-G solvation = -0.620171 kcal Electronic energy + Delta-G solvation = -31188.442619 eV Core-core repulsion = 27345.450908 eV Total energy + Delta-G solvation = -3842.991710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.79993 -40.50777 -38.97295 -36.89732 -35.19213 -34.34837 -33.83898 -33.34261 -30.96166 -30.31730 -29.73193 -28.52491 -26.37912 -25.72742 -24.65145 -23.17692 -22.82102 -22.33780 -21.57873 -21.23320 -19.91499 -18.61861 -17.44527 -17.37046 -17.12162 -17.00800 -16.65587 -16.15216 -15.85950 -15.73957 -15.36204 -15.18662 -14.91888 -14.63122 -14.36450 -14.30859 -14.18929 -13.93421 -13.86978 -13.67441 -13.38868 -13.15932 -12.98603 -12.88082 -12.78698 -12.68562 -12.60491 -12.24831 -12.17604 -12.09657 -11.94462 -11.76494 -11.70480 -11.64587 -11.56256 -11.51373 -11.39396 -10.76680 -10.35489 -9.64869 -9.50300 -9.43101 -8.91841 -7.84627 -5.21874 0.46283 0.54959 1.44516 1.48639 1.54798 1.72235 2.03367 2.50113 2.89587 3.33791 3.38262 3.65046 3.75670 3.88484 3.96549 4.00480 4.06155 4.12051 4.13016 4.15798 4.27894 4.32689 4.36218 4.37351 4.51744 4.54709 4.57063 4.60093 4.66524 4.70561 4.75866 4.78253 4.83339 4.93233 5.04813 5.05896 5.11672 5.11928 5.17181 5.20758 5.26552 5.29654 5.43558 5.45285 5.48038 5.58459 5.61924 5.64125 5.66086 5.73128 5.78926 6.17117 6.18250 6.59200 7.04182 7.30724 7.74898 8.45458 9.27064 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002863 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.395077 B = 9778.535316 C =10337.430389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.077 4.077 4 C -0.132 4.132 5 C -0.126 4.126 6 C -0.137 4.137 7 C -0.121 4.121 8 C -0.078 4.078 9 C -0.094 4.094 10 C 0.513 3.487 11 O -0.569 6.569 12 N -0.602 5.602 13 C 0.103 3.897 14 C -0.120 4.120 15 C -0.112 4.112 16 C 0.152 3.848 17 H -0.002 1.002 18 C 0.134 3.866 19 H 0.078 0.922 20 C -0.110 4.110 21 C 0.183 3.817 22 N -0.612 5.612 23 C -0.234 4.234 24 H 0.089 0.911 25 C -0.071 4.071 26 N -0.956 5.956 27 Si 0.980 3.020 28 H -0.272 1.272 29 H -0.298 1.298 30 H -0.278 1.278 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.024 0.976 51 H -0.004 1.004 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.934 7.965 -12.078 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.077 4.077 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.139 4.139 8 C -0.078 4.078 9 C -0.133 4.133 10 C 0.302 3.698 11 O -0.448 6.448 12 N -0.335 5.335 13 C -0.018 4.018 14 C -0.159 4.159 15 C -0.151 4.151 16 C 0.044 3.956 17 H 0.015 0.985 18 C 0.028 3.972 19 H 0.096 0.904 20 C -0.149 4.149 21 C 0.058 3.942 22 N -0.337 5.337 23 C -0.363 4.363 24 H 0.107 0.893 25 C -0.263 4.263 26 N -0.605 5.605 27 Si 0.808 3.192 28 H -0.197 1.197 29 H -0.224 1.224 30 H -0.204 1.204 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.043 0.957 51 H 0.014 0.986 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.232 7.889 -12.321 26.614 hybrid contribution 1.667 -0.330 0.854 1.902 sum -20.564 7.559 -11.467 24.729 Atomic orbital electron populations 1.21734 0.92730 1.02608 1.02664 1.20560 0.97563 0.91946 1.02377 1.19927 0.98540 0.96319 0.92910 1.21256 1.00240 0.95648 0.97875 1.21406 0.99281 0.94879 0.98826 1.21357 1.00604 1.00954 0.92580 1.21238 0.98883 0.94912 0.98913 1.19338 1.00491 0.94218 0.93775 1.20805 0.96473 1.00315 0.95720 1.21090 0.89863 0.79111 0.79689 1.90713 1.32596 1.64128 1.57345 1.48118 1.14956 1.48035 1.22374 1.22105 0.84820 1.04429 0.90458 1.21914 0.98230 0.99842 0.95878 1.21449 0.94257 1.00696 0.98671 1.20963 0.86474 0.94061 0.94085 0.98466 1.21933 0.86567 0.94543 0.94153 0.90411 1.22651 0.94262 1.01790 0.96190 1.21438 0.91877 0.97515 0.83388 1.44359 1.13205 1.73907 1.02244 1.19387 0.98590 1.34395 0.83911 0.89285 1.25721 0.97370 1.02021 1.01199 1.70185 1.10254 1.50624 1.29412 0.85126 0.76875 0.78115 0.79067 1.19725 1.22398 1.20358 0.92139 0.91298 0.91727 0.91130 0.92571 0.84834 0.84251 0.84606 0.85579 0.85469 0.85856 0.86232 0.89534 0.91777 0.87018 0.91727 0.92790 0.91309 0.92209 0.95742 0.98567 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.72 71.98 0.70 -1.13 16 2 C -0.09 -1.66 5.38 29.85 0.16 -1.50 16 3 C -0.08 -1.72 5.13 -19.87 -0.10 -1.82 16 4 C -0.13 -2.75 9.68 22.27 0.22 -2.54 16 5 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 6 C -0.14 -2.86 10.05 22.27 0.22 -2.63 16 7 C -0.12 -2.76 9.68 22.27 0.22 -2.54 16 8 C -0.08 -1.78 4.37 -19.87 -0.09 -1.87 16 9 C -0.09 -1.81 3.58 29.10 0.10 -1.70 16 10 C 0.51 14.98 6.89 87.66 0.60 15.59 16 11 O -0.57 -22.18 12.86 -3.04 -0.04 -22.22 16 12 N -0.60 -17.00 2.91 -791.07 -2.30 -19.31 16 13 C 0.10 1.82 6.31 86.03 0.54 2.36 16 14 C -0.12 -2.41 5.94 30.82 0.18 -2.23 16 15 C -0.11 -3.58 5.44 30.29 0.16 -3.42 16 16 C 0.15 6.39 2.60 45.52 0.12 6.51 16 17 H 0.00 -0.10 8.03 -2.39 -0.02 -0.11 16 18 C 0.13 5.07 3.31 46.15 0.15 5.22 16 19 H 0.08 2.98 8.12 -2.38 -0.02 2.96 16 20 C -0.11 -5.01 5.01 31.59 0.16 -4.85 16 21 C 0.18 10.05 5.47 86.86 0.48 10.53 16 22 N -0.61 -32.84 3.35 -670.22 -2.25 -35.09 16 23 C -0.23 -13.30 9.95 84.03 0.84 -12.46 16 24 H 0.09 4.72 7.32 -2.91 -0.02 4.70 16 25 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 26 N -0.96 -60.05 10.46 21.65 0.23 -59.82 16 27 Si 0.98 46.59 29.55 68.60 2.03 48.61 16 28 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 29 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 30 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.73 6.80 -2.39 -0.02 0.71 16 34 H 0.07 1.31 8.05 -2.38 -0.02 1.29 16 35 H 0.06 1.26 6.42 -2.39 -0.02 1.24 16 36 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.13 1.75 5.50 -2.39 -0.01 1.74 16 41 H 0.12 1.75 7.66 -2.38 -0.02 1.73 16 42 H 0.12 1.19 6.18 -2.39 -0.01 1.18 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 47 H 0.05 1.83 7.71 -2.38 -0.02 1.82 16 48 H 0.07 3.32 6.21 -2.38 -0.01 3.30 16 49 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.02 1.46 7.19 -2.39 -0.02 1.45 16 51 H 0.00 -0.24 7.81 -2.39 -0.02 -0.26 16 52 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -78.19 395.00 3.91 -74.28 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.89 Total: 17.98 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.36 Total: -4.43 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -4.32 Total: -114.22 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.22 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.19 3.91 -74.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049550855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.657 kcal (2) G-P(sol) polarization free energy of solvation -78.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds