Wall clock time and date at job start Wed Apr 1 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46779 * 2 1 4 4 C 1.38253 * 119.99811 * 265.01790 * 3 2 1 5 5 C 1.38221 * 120.00077 * 180.02562 * 4 3 2 6 6 C 1.38251 * 119.99598 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00336 * 359.74510 * 6 5 4 8 8 C 1.38211 * 120.00347 * 85.00097 * 3 2 1 9 9 C 1.50701 * 119.99838 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47623 * 84.99954 * 9 8 3 11 11 O 1.21288 * 119.99241 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00439 * 180.02562 * 10 9 8 13 13 C 1.46802 * 119.57549 * 359.97438 * 12 10 9 14 14 C 1.53462 * 107.64935 * 232.08686 * 13 12 10 15 15 C 1.52732 * 108.44229 * 301.89106 * 14 13 12 16 16 C 1.53004 * 110.80686 * 63.76510 * 15 14 13 17 17 H 1.09007 * 111.38686 * 68.77056 * 16 15 14 18 18 C 1.45247 * 119.66488 * 180.02562 * 12 10 9 19 19 H 1.08996 * 110.58835 * 11.42903 * 18 12 10 20 20 C 1.54425 * 111.58952 * 248.63805 * 18 12 10 21 21 C 1.54572 * 102.44795 * 203.37971 * 20 18 12 22 22 N 1.47119 * 107.24927 * 21.67398 * 21 20 18 23 23 C 1.36943 * 125.76315 * 182.61592 * 22 21 20 24 24 H 1.07999 * 119.99734 * 179.97438 * 23 22 21 25 25 C 1.38805 * 119.99883 * 359.97438 * 23 22 21 26 26 N 1.31614 * 120.00306 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99840 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47286 * 89.99812 * 27 25 23 29 29 H 1.48507 * 109.47272 * 210.00075 * 27 25 23 30 30 H 1.48500 * 109.47285 * 329.99529 * 27 25 23 31 31 H 1.09003 * 109.47196 * 299.99939 * 1 2 3 32 32 H 1.08998 * 109.47084 * 60.00454 * 1 2 3 33 33 H 1.09007 * 109.46632 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47589 * 239.99588 * 2 1 3 35 35 H 1.09006 * 109.47391 * 119.99608 * 2 1 3 36 36 H 1.07997 * 120.00365 * 359.97438 * 4 3 2 37 37 H 1.07998 * 119.99963 * 179.97438 * 5 4 3 38 38 H 1.08000 * 119.99584 * 179.97438 * 6 5 4 39 39 H 1.08004 * 120.00049 * 180.27290 * 7 6 5 40 40 H 1.09006 * 109.46982 * 325.00109 * 9 8 3 41 41 H 1.08997 * 109.47367 * 205.00265 * 9 8 3 42 42 H 1.09002 * 109.83367 * 112.53084 * 13 12 10 43 43 H 1.08996 * 109.83500 * 351.64143 * 13 12 10 44 44 H 1.09001 * 109.64357 * 61.57235 * 14 13 12 45 45 H 1.08998 * 109.64074 * 181.99185 * 14 13 12 46 46 H 1.09002 * 109.21242 * 184.11165 * 15 14 13 47 47 H 1.09005 * 109.21269 * 303.42608 * 15 14 13 48 48 H 1.09004 * 110.80990 * 321.61656 * 20 18 12 49 49 H 1.09000 * 110.81056 * 84.94593 * 20 18 12 50 50 H 1.08996 * 109.88797 * 141.08423 * 21 20 18 51 51 H 1.08993 * 109.88365 * 262.10503 * 21 20 18 52 52 H 0.97005 * 119.99962 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3606 2.0379 -1.1928 5 6 2.8218 3.3409 -1.1928 6 6 2.9542 4.0273 0.0000 7 6 2.6203 3.4124 1.1919 8 6 2.1642 2.1072 1.1923 9 6 1.8065 1.4345 2.4926 10 6 2.9861 0.6379 2.9874 11 8 4.0162 0.6188 2.3474 12 7 2.8965 -0.0531 4.1410 13 6 1.6454 -0.0229 4.9084 14 6 1.9937 0.3680 6.3510 15 6 2.9902 -0.6508 6.9004 16 6 4.3029 -0.6048 6.1158 17 1 4.8425 0.3246 6.2980 18 6 4.0382 -0.8180 4.6113 19 1 4.9300 -0.5680 4.0367 20 6 3.7725 -2.3375 4.5399 21 6 4.7597 -2.8980 5.5889 22 7 5.0887 -1.7987 6.5096 23 6 5.9719 -1.8665 7.5539 24 1 6.1438 -0.9984 8.1730 25 6 6.6463 -3.0509 7.8167 26 7 6.4365 -4.1089 7.0625 27 14 7.8506 -3.1436 9.2417 28 1 7.1326 -3.5699 10.4697 29 1 8.9173 -4.1272 8.9252 30 1 8.4595 -1.8073 9.4630 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.2577 1.5016 -2.1245 37 1 3.0787 3.8228 -2.1246 38 1 3.3149 5.0453 0.0000 39 1 2.7196 3.9501 2.1233 40 1 0.9582 0.7682 2.3355 41 1 1.5425 2.1904 3.2322 42 1 1.1791 -1.0081 4.8945 43 1 0.9661 0.7137 4.4795 44 1 2.4414 1.3617 6.3634 45 1 1.0895 0.3659 6.9596 46 1 3.1905 -0.4274 7.9483 47 1 2.5611 -1.6499 6.8232 48 1 2.7429 -2.5641 4.8172 49 1 3.9982 -2.7238 3.5460 50 1 4.2922 -3.7148 6.1389 51 1 5.6636 -3.2537 5.0945 52 1 6.9081 -4.9365 7.2460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049550856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:48 Heat of formation + Delta-G solvation = 10.277131 kcal Electronic energy + Delta-G solvation = -31030.650614 eV Core-core repulsion = 27188.131446 eV Total energy + Delta-G solvation = -3842.519168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.61578 -39.50078 -37.79009 -35.24854 -34.42575 -32.79511 -32.37424 -32.05611 -29.66366 -29.12723 -28.41009 -27.44363 -24.59603 -24.26809 -23.92132 -22.28374 -21.94794 -20.92072 -20.12041 -19.69784 -18.08134 -17.16836 -16.87171 -16.52921 -16.20123 -15.53069 -15.14332 -14.75851 -14.71187 -14.26859 -14.02117 -13.90429 -13.76145 -13.55494 -13.48206 -13.17482 -13.01620 -12.85937 -12.54317 -12.21651 -12.11388 -12.03390 -11.89258 -11.82418 -11.43628 -11.34111 -11.03635 -10.98142 -10.90163 -10.79641 -10.78212 -10.63130 -10.46567 -10.08152 -10.06134 -9.64676 -9.60525 -9.52468 -8.84055 -8.62720 -8.61767 -8.24455 -6.85694 -5.70627 -3.04777 1.27525 1.35141 2.80343 3.18237 3.40506 3.45785 3.47636 3.72831 4.48635 4.52192 4.63745 4.69851 4.78936 4.85202 4.97941 5.02677 5.09931 5.15045 5.21277 5.25745 5.29544 5.38091 5.38886 5.45890 5.49732 5.53429 5.59273 5.65132 5.69834 5.75747 5.78693 5.88046 5.91828 6.00078 6.01916 6.11251 6.11559 6.22305 6.30884 6.36774 6.41208 6.44129 6.51645 6.59435 6.60422 6.74468 6.94753 7.00410 7.07553 7.55612 7.60475 7.66333 7.83114 8.23809 8.41115 9.21040 9.80742 10.46705 11.40576 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002680 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.982782 B =10444.741069 C =10541.334791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.106 4.106 10 C 0.511 3.489 11 O -0.532 6.532 12 N -0.594 5.594 13 C 0.105 3.895 14 C -0.133 4.133 15 C -0.129 4.129 16 C 0.156 3.844 17 H 0.058 0.942 18 C 0.131 3.869 19 H 0.100 0.900 20 C -0.152 4.152 21 C 0.181 3.819 22 N -0.598 5.598 23 C -0.226 4.226 24 H 0.077 0.923 25 C -0.007 4.007 26 N -0.921 5.921 27 Si 0.911 3.089 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.041 0.959 51 H 0.051 0.949 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.880 12.581 -12.852 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.145 4.145 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.326 5.326 13 C -0.017 4.017 14 C -0.172 4.172 15 C -0.169 4.169 16 C 0.048 3.952 17 H 0.076 0.924 18 C 0.027 3.973 19 H 0.118 0.882 20 C -0.191 4.191 21 C 0.056 3.944 22 N -0.322 5.322 23 C -0.354 4.354 24 H 0.095 0.905 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.742 3.258 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.140 12.361 -13.081 23.518 hybrid contribution 0.658 -0.165 0.902 1.128 sum -14.482 12.196 -12.179 22.512 Atomic orbital electron populations 1.21767 0.94737 1.01818 1.02018 1.20574 0.95883 0.92901 1.03326 1.19662 0.98337 0.95677 0.92613 1.20965 1.00239 0.95183 0.97312 1.21081 0.99921 0.94857 0.97964 1.21045 1.00761 0.99953 0.92574 1.20970 0.98675 0.94501 0.98150 1.19147 0.99781 0.93920 0.93167 1.20798 0.97973 1.00036 0.95733 1.20453 0.89292 0.79657 0.80760 1.90725 1.31085 1.63009 1.56010 1.47660 1.14210 1.48556 1.22219 1.21849 0.85707 1.01772 0.92415 1.21926 0.99963 1.00257 0.95058 1.22108 0.96211 0.98312 1.00315 1.21339 0.91430 0.91994 0.90456 0.92380 1.21769 0.88275 0.90978 0.96314 0.88151 1.23116 1.00508 0.94968 1.00494 1.21153 0.94951 0.89880 0.88374 1.44705 1.47893 1.06225 1.33394 1.19030 1.15255 0.96874 1.04285 0.90470 1.24791 1.00276 0.95957 0.99327 1.69956 1.45300 1.01662 1.39922 0.86129 0.80630 0.77284 0.81766 1.21663 1.21696 1.20708 0.92570 0.92548 0.92248 0.90988 0.90859 0.86301 0.86345 0.86273 0.86276 0.87969 0.88233 0.91221 0.90210 0.91861 0.91325 0.92182 0.91852 0.92361 0.92160 0.94098 0.93095 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.72 37.16 0.36 -0.81 16 2 C -0.09 -0.93 5.38 -27.88 -0.15 -1.08 16 3 C -0.06 -0.74 5.13 -104.63 -0.54 -1.27 16 4 C -0.12 -1.29 9.68 -39.58 -0.38 -1.67 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.13 -1.32 10.05 -39.59 -0.40 -1.72 16 7 C -0.10 -1.20 9.68 -39.58 -0.38 -1.58 16 8 C -0.06 -0.72 4.37 -104.63 -0.46 -1.17 16 9 C -0.11 -1.14 3.48 -29.04 -0.10 -1.25 16 10 C 0.51 7.71 6.86 -10.99 -0.08 7.63 16 11 O -0.53 -10.31 15.39 5.55 0.09 -10.23 16 12 N -0.59 -8.85 2.74 -164.91 -0.45 -9.30 16 13 C 0.11 1.20 6.04 -3.64 -0.02 1.18 16 14 C -0.13 -1.65 6.11 -26.63 -0.16 -1.81 16 15 C -0.13 -2.21 5.10 -26.87 -0.14 -2.34 16 16 C 0.16 3.17 3.60 -66.32 -0.24 2.93 16 17 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 18 C 0.13 2.46 3.08 -67.21 -0.21 2.25 16 19 H 0.10 2.18 7.01 -51.93 -0.36 1.81 16 20 C -0.15 -2.92 6.08 -25.16 -0.15 -3.07 16 21 C 0.18 4.40 5.19 -2.88 -0.01 4.38 16 22 N -0.60 -14.94 2.91 -162.15 -0.47 -15.42 16 23 C -0.23 -6.22 10.29 -15.06 -0.15 -6.38 16 24 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 25 C -0.01 -0.20 5.49 -17.44 -0.10 -0.30 16 26 N -0.92 -27.00 10.33 55.49 0.57 -26.42 16 27 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 30 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 35 H 0.07 0.88 6.42 -51.93 -0.33 0.55 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.10 0.91 5.41 -51.93 -0.28 0.63 16 41 H 0.10 0.86 7.52 -51.93 -0.39 0.47 16 42 H 0.07 0.77 7.52 -51.93 -0.39 0.38 16 43 H 0.08 0.65 5.82 -51.93 -0.30 0.35 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.16 7.12 -51.93 -0.37 0.79 16 48 H 0.06 1.02 6.80 -51.93 -0.35 0.67 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 51 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 52 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -32.57 396.36 -11.55 -44.12 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.53 Total: 1.87 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.71 Total: -7.72 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.35 Total: -51.14 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.57 -11.55 -44.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049550856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.397 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds