Wall clock time and date at job start Wed Apr 1 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46779 * 2 1 4 4 C 1.38253 * 119.99811 * 265.01790 * 3 2 1 5 5 C 1.38221 * 120.00077 * 180.02562 * 4 3 2 6 6 C 1.38251 * 119.99598 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00336 * 359.74510 * 6 5 4 8 8 C 1.38211 * 120.00347 * 85.00097 * 3 2 1 9 9 C 1.50701 * 119.99838 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47623 * 84.99954 * 9 8 3 11 11 O 1.21288 * 119.99241 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00439 * 180.02562 * 10 9 8 13 13 C 1.46802 * 119.57549 * 359.97438 * 12 10 9 14 14 C 1.53462 * 107.64935 * 232.08686 * 13 12 10 15 15 C 1.52732 * 108.44229 * 301.89106 * 14 13 12 16 16 C 1.53004 * 110.80686 * 63.76510 * 15 14 13 17 17 H 1.09007 * 111.38686 * 68.77056 * 16 15 14 18 18 C 1.45247 * 119.66488 * 180.02562 * 12 10 9 19 19 H 1.08996 * 110.58835 * 11.42903 * 18 12 10 20 20 C 1.54425 * 111.58952 * 248.63805 * 18 12 10 21 21 C 1.54572 * 102.44795 * 203.37971 * 20 18 12 22 22 N 1.47119 * 107.24927 * 21.67398 * 21 20 18 23 23 C 1.36943 * 125.76315 * 182.61592 * 22 21 20 24 24 H 1.07999 * 119.99734 * 179.97438 * 23 22 21 25 25 C 1.38805 * 119.99883 * 359.97438 * 23 22 21 26 26 N 1.31614 * 120.00306 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99840 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47286 * 89.99812 * 27 25 23 29 29 H 1.48507 * 109.47272 * 210.00075 * 27 25 23 30 30 H 1.48500 * 109.47285 * 329.99529 * 27 25 23 31 31 H 1.09003 * 109.47196 * 299.99939 * 1 2 3 32 32 H 1.08998 * 109.47084 * 60.00454 * 1 2 3 33 33 H 1.09007 * 109.46632 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47589 * 239.99588 * 2 1 3 35 35 H 1.09006 * 109.47391 * 119.99608 * 2 1 3 36 36 H 1.07997 * 120.00365 * 359.97438 * 4 3 2 37 37 H 1.07998 * 119.99963 * 179.97438 * 5 4 3 38 38 H 1.08000 * 119.99584 * 179.97438 * 6 5 4 39 39 H 1.08004 * 120.00049 * 180.27290 * 7 6 5 40 40 H 1.09006 * 109.46982 * 325.00109 * 9 8 3 41 41 H 1.08997 * 109.47367 * 205.00265 * 9 8 3 42 42 H 1.09002 * 109.83367 * 112.53084 * 13 12 10 43 43 H 1.08996 * 109.83500 * 351.64143 * 13 12 10 44 44 H 1.09001 * 109.64357 * 61.57235 * 14 13 12 45 45 H 1.08998 * 109.64074 * 181.99185 * 14 13 12 46 46 H 1.09002 * 109.21242 * 184.11165 * 15 14 13 47 47 H 1.09005 * 109.21269 * 303.42608 * 15 14 13 48 48 H 1.09004 * 110.80990 * 321.61656 * 20 18 12 49 49 H 1.09000 * 110.81056 * 84.94593 * 20 18 12 50 50 H 1.08996 * 109.88797 * 141.08423 * 21 20 18 51 51 H 1.08993 * 109.88365 * 262.10503 * 21 20 18 52 52 H 0.97005 * 119.99962 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3606 2.0379 -1.1928 5 6 2.8218 3.3409 -1.1928 6 6 2.9542 4.0273 0.0000 7 6 2.6203 3.4124 1.1919 8 6 2.1642 2.1072 1.1923 9 6 1.8065 1.4345 2.4926 10 6 2.9861 0.6379 2.9874 11 8 4.0162 0.6188 2.3474 12 7 2.8965 -0.0531 4.1410 13 6 1.6454 -0.0229 4.9084 14 6 1.9937 0.3680 6.3510 15 6 2.9902 -0.6508 6.9004 16 6 4.3029 -0.6048 6.1158 17 1 4.8425 0.3246 6.2980 18 6 4.0382 -0.8180 4.6113 19 1 4.9300 -0.5680 4.0367 20 6 3.7725 -2.3375 4.5399 21 6 4.7597 -2.8980 5.5889 22 7 5.0887 -1.7987 6.5096 23 6 5.9719 -1.8665 7.5539 24 1 6.1438 -0.9984 8.1730 25 6 6.6463 -3.0509 7.8167 26 7 6.4365 -4.1089 7.0625 27 14 7.8506 -3.1436 9.2417 28 1 7.1326 -3.5699 10.4697 29 1 8.9173 -4.1272 8.9252 30 1 8.4595 -1.8073 9.4630 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.2577 1.5016 -2.1245 37 1 3.0787 3.8228 -2.1246 38 1 3.3149 5.0453 0.0000 39 1 2.7196 3.9501 2.1233 40 1 0.9582 0.7682 2.3355 41 1 1.5425 2.1904 3.2322 42 1 1.1791 -1.0081 4.8945 43 1 0.9661 0.7137 4.4795 44 1 2.4414 1.3617 6.3634 45 1 1.0895 0.3659 6.9596 46 1 3.1905 -0.4274 7.9483 47 1 2.5611 -1.6499 6.8232 48 1 2.7429 -2.5641 4.8172 49 1 3.9982 -2.7238 3.5460 50 1 4.2922 -3.7148 6.1389 51 1 5.6636 -3.2537 5.0945 52 1 6.9081 -4.9365 7.2460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049550856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:41 Heat of formation + Delta-G solvation = -6.726495 kcal Electronic energy + Delta-G solvation = -31031.387946 eV Core-core repulsion = 27188.131446 eV Total energy + Delta-G solvation = -3843.256500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.18 seconds Orbital eigenvalues (eV) -41.80223 -40.52371 -39.15292 -36.74367 -35.19009 -34.27704 -33.68593 -33.37412 -30.97381 -30.34878 -29.86355 -28.51052 -26.32114 -25.74930 -24.67408 -23.38306 -23.02361 -22.04448 -21.76000 -20.87849 -19.44542 -18.75647 -18.33793 -17.38727 -17.07909 -16.81190 -16.69417 -16.19087 -15.87602 -15.74646 -15.17606 -15.06818 -14.96977 -14.62758 -14.35197 -14.30857 -14.09740 -13.92848 -13.84304 -13.72512 -13.49439 -13.10834 -12.98620 -12.80741 -12.80151 -12.62742 -12.59786 -12.34976 -12.26668 -12.13216 -12.06438 -11.92012 -11.67050 -11.61125 -11.53374 -11.50058 -11.18204 -10.79589 -10.72406 -9.65275 -9.57097 -9.43678 -8.90304 -7.85275 -5.21211 0.46162 0.55320 1.43929 1.46155 1.54563 1.65893 2.01153 2.48905 2.90037 3.32523 3.53454 3.62683 3.74755 3.87284 3.90094 4.00549 4.04380 4.08804 4.12970 4.14808 4.20209 4.32952 4.37229 4.37374 4.51212 4.54338 4.58545 4.62368 4.67116 4.68574 4.75761 4.78297 4.84199 4.85955 4.98230 5.06433 5.09846 5.11977 5.19054 5.22227 5.26921 5.38220 5.39979 5.43257 5.55926 5.61961 5.63991 5.65980 5.67577 5.72850 5.78931 6.16941 6.18403 6.50167 7.07751 7.24118 7.74162 8.39712 9.24755 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002680 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.982782 B =10444.741069 C =10541.334791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.078 4.078 4 C -0.134 4.134 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.080 4.080 9 C -0.094 4.094 10 C 0.510 3.490 11 O -0.583 6.583 12 N -0.592 5.592 13 C 0.100 3.900 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.151 3.849 17 H 0.046 0.954 18 C 0.148 3.852 19 H 0.063 0.937 20 C -0.133 4.133 21 C 0.193 3.807 22 N -0.619 5.619 23 C -0.236 4.236 24 H 0.081 0.919 25 C -0.066 4.066 26 N -0.952 5.952 27 Si 0.977 3.023 28 H -0.283 1.283 29 H -0.296 1.296 30 H -0.271 1.271 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.084 0.916 49 H 0.062 0.938 50 H 0.012 0.988 51 H 0.007 0.993 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.868 14.739 -12.928 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.080 4.080 9 C -0.133 4.133 10 C 0.300 3.700 11 O -0.463 6.463 12 N -0.324 5.324 13 C -0.021 4.021 14 C -0.162 4.162 15 C -0.159 4.159 16 C 0.044 3.956 17 H 0.064 0.936 18 C 0.042 3.958 19 H 0.081 0.919 20 C -0.172 4.172 21 C 0.068 3.932 22 N -0.344 5.344 23 C -0.365 4.365 24 H 0.099 0.901 25 C -0.259 4.259 26 N -0.601 5.601 27 Si 0.806 3.194 28 H -0.210 1.210 29 H -0.223 1.223 30 H -0.196 1.196 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.099 0.901 43 H 0.144 0.856 44 H 0.087 0.913 45 H 0.122 0.878 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.102 0.898 49 H 0.081 0.919 50 H 0.030 0.970 51 H 0.025 0.975 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.189 14.567 -13.149 26.757 hybrid contribution 1.634 -0.776 0.863 2.004 sum -16.554 13.791 -12.286 24.803 Atomic orbital electron populations 1.21736 0.92691 1.02587 1.02732 1.20567 0.97625 0.92083 1.02296 1.19930 0.98598 0.96245 0.93060 1.21252 1.00327 0.95746 0.97817 1.21414 0.99240 0.94798 0.98942 1.21372 1.00556 1.00988 0.92516 1.21260 0.98685 0.94739 0.99068 1.19359 1.00601 0.94371 0.93704 1.20832 0.96222 1.00413 0.95880 1.21264 0.89856 0.79014 0.79895 1.90709 1.33485 1.64631 1.57436 1.47693 1.14146 1.47796 1.22728 1.22233 0.84430 1.04016 0.91407 1.21891 0.99785 0.98512 0.95967 1.21891 0.95389 0.99481 0.99119 1.21547 0.92421 0.89675 0.91940 0.93568 1.21192 0.88988 0.90963 0.94677 0.91914 1.22909 1.00307 0.95140 0.98822 1.20819 0.94046 0.89540 0.88837 1.44968 1.48343 1.08034 1.33026 1.19394 1.15399 0.96922 1.04765 0.90131 1.25629 1.02396 0.95812 1.02094 1.70180 1.46379 1.01916 1.41603 0.85093 0.78218 0.77345 0.78763 1.21001 1.22297 1.19564 0.91611 0.92072 0.91423 0.91222 0.92702 0.84976 0.84251 0.84396 0.85116 0.85500 0.85121 0.90130 0.85572 0.91349 0.87766 0.93527 0.93051 0.89772 0.91891 0.97009 0.97479 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.72 71.98 0.70 -1.17 16 2 C -0.09 -1.71 5.38 29.85 0.16 -1.55 16 3 C -0.08 -1.72 5.13 -19.87 -0.10 -1.82 16 4 C -0.13 -2.72 9.68 22.27 0.22 -2.50 16 5 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 6 C -0.14 -2.64 10.05 22.27 0.22 -2.41 16 7 C -0.12 -2.51 9.68 22.27 0.22 -2.30 16 8 C -0.08 -1.76 4.37 -19.87 -0.09 -1.84 16 9 C -0.09 -1.72 3.48 29.10 0.10 -1.62 16 10 C 0.51 14.52 6.86 87.66 0.60 15.12 16 11 O -0.58 -22.81 15.39 -3.06 -0.05 -22.85 16 12 N -0.59 -16.44 2.74 -794.05 -2.17 -18.61 16 13 C 0.10 1.82 6.04 86.48 0.52 2.34 16 14 C -0.12 -2.54 6.11 30.66 0.19 -2.35 16 15 C -0.12 -3.91 5.10 30.51 0.16 -3.75 16 16 C 0.15 6.21 3.60 45.08 0.16 6.37 16 17 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 18 C 0.15 5.61 3.08 46.13 0.14 5.75 16 19 H 0.06 2.86 7.01 -2.39 -0.02 2.85 16 20 C -0.13 -5.18 6.08 31.61 0.19 -4.99 16 21 C 0.19 9.88 5.19 86.80 0.45 10.33 16 22 N -0.62 -32.21 2.91 -666.93 -1.94 -34.15 16 23 C -0.24 -13.41 10.29 84.03 0.86 -12.55 16 24 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 25 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 26 N -0.95 -58.47 10.33 21.65 0.22 -58.25 16 27 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 28 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 29 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 30 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 31 H 0.06 0.74 6.80 -2.39 -0.02 0.73 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 35 H 0.05 1.26 6.42 -2.38 -0.02 1.24 16 36 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.13 1.69 5.41 -2.38 -0.01 1.68 16 41 H 0.13 1.58 7.52 -2.39 -0.02 1.56 16 42 H 0.08 1.38 7.52 -2.39 -0.02 1.36 16 43 H 0.13 1.23 5.82 -2.39 -0.01 1.22 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 1.81 7.12 -2.38 -0.02 1.79 16 48 H 0.08 2.85 6.80 -2.38 -0.02 2.84 16 49 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.01 0.66 7.60 -2.39 -0.02 0.64 16 51 H 0.01 0.41 7.30 -2.39 -0.02 0.39 16 52 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -77.05 396.36 4.38 -72.67 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.90 Total: 16.98 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.40 Total: -4.50 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -3.89 Total: -111.02 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -77.05 4.38 -72.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049550856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.941 kcal (2) G-P(sol) polarization free energy of solvation -77.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.18 seconds