Wall clock time and date at job start Wed Apr 1 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47530 * 2 1 4 4 C 1.38263 * 119.99707 * 265.02179 * 3 2 1 5 5 C 1.38213 * 119.99642 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.38209 * 119.99766 * 359.70252 * 6 5 4 8 8 C 1.38208 * 119.99904 * 84.99647 * 3 2 1 9 9 C 1.50700 * 120.00351 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.46932 * 85.00095 * 9 8 3 11 11 O 1.21282 * 119.99855 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99845 * 180.02562 * 10 9 8 13 13 C 1.45730 * 117.75919 * 0.02562 * 12 10 9 14 14 C 1.53051 * 109.54260 * 141.07548 * 13 12 10 15 15 C 1.52942 * 108.49869 * 53.80520 * 14 13 12 16 16 C 1.52936 * 109.79003 * 294.01096 * 15 14 13 17 17 H 1.08994 * 110.50665 * 292.89801 * 16 15 14 18 18 C 1.44179 * 117.74705 * 180.02562 * 12 10 9 19 19 H 1.08999 * 108.70088 * 333.01427 * 18 12 10 20 20 C 1.54067 * 111.78106 * 93.58184 * 18 12 10 21 21 C 1.54056 * 103.74257 * 153.25181 * 20 18 12 22 22 N 1.46884 * 107.70758 * 342.86518 * 21 20 18 23 23 C 1.36934 * 125.58284 * 177.00619 * 22 21 20 24 24 H 1.08003 * 120.00178 * 180.02562 * 23 22 21 25 25 C 1.38818 * 120.00019 * 0.02562 * 23 22 21 26 26 N 1.31625 * 119.99881 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00009 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47270 * 90.00230 * 27 25 23 29 29 H 1.48497 * 109.46942 * 209.99845 * 27 25 23 30 30 H 1.48491 * 109.47326 * 329.99976 * 27 25 23 31 31 H 1.09002 * 109.47286 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47343 * 300.00309 * 1 2 3 33 33 H 1.09011 * 109.46747 * 60.00108 * 1 2 3 34 34 H 1.09003 * 109.47279 * 239.99451 * 2 1 3 35 35 H 1.09006 * 109.47202 * 119.99793 * 2 1 3 36 36 H 1.07999 * 119.99857 * 359.97438 * 4 3 2 37 37 H 1.07999 * 119.99850 * 180.02562 * 5 4 3 38 38 H 1.07998 * 119.99381 * 179.97438 * 6 5 4 39 39 H 1.08004 * 119.99826 * 180.29268 * 7 6 5 40 40 H 1.08998 * 109.46812 * 325.00515 * 9 8 3 41 41 H 1.09001 * 109.47296 * 205.00168 * 9 8 3 42 42 H 1.09002 * 109.46027 * 21.05355 * 13 12 10 43 43 H 1.09000 * 109.45364 * 261.09167 * 13 12 10 44 44 H 1.08999 * 109.63233 * 173.51259 * 14 13 12 45 45 H 1.09005 * 109.62873 * 293.90289 * 14 13 12 46 46 H 1.08995 * 109.41806 * 54.10694 * 15 14 13 47 47 H 1.08994 * 109.41982 * 173.97944 * 15 14 13 48 48 H 1.08997 * 110.57169 * 34.68318 * 20 18 12 49 49 H 1.08998 * 110.69054 * 271.87765 * 20 18 12 50 50 H 1.09002 * 109.80735 * 223.31756 * 21 20 18 51 51 H 1.09001 * 109.81034 * 102.41714 * 21 20 18 52 52 H 0.96992 * 120.00102 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0378 -1.1929 5 6 2.8211 3.3411 -1.1929 6 6 2.9536 4.0275 -0.0001 7 6 2.6200 3.4124 1.1918 8 6 2.1644 2.1071 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9860 0.6378 2.9874 11 8 4.0161 0.6186 2.3475 12 7 2.8962 -0.0532 4.1411 13 6 1.6356 0.0038 4.8701 14 6 1.3223 -1.3736 5.4593 15 6 2.5247 -1.8330 6.2853 16 6 3.7256 -2.0646 5.3671 17 1 3.5438 -2.9128 4.7072 18 6 4.0541 -0.7981 4.5692 19 1 4.6391 -1.0701 3.6907 20 6 4.9365 0.0200 5.5313 21 6 5.6476 -1.0531 6.3776 22 7 4.9079 -2.3118 6.2164 23 6 5.2577 -3.5173 6.7637 24 1 4.6458 -4.3892 6.5855 25 6 6.3989 -3.6187 7.5475 26 7 7.1450 -2.5562 7.7642 27 14 6.8765 -5.2633 8.2935 28 1 7.7596 -5.9965 7.3513 29 1 7.5968 -5.0363 9.5721 30 1 5.6529 -6.0644 8.5502 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.2577 1.5015 -2.1246 37 1 3.0773 3.8232 -2.1248 38 1 3.3137 5.0456 -0.0002 39 1 2.7190 3.9502 2.1232 40 1 0.9582 0.7682 2.3354 41 1 1.5425 2.1905 3.2321 42 1 0.8361 0.2984 4.1904 43 1 1.7148 0.7338 5.6756 44 1 0.4424 -1.3066 6.0992 45 1 1.1355 -2.0829 4.6530 46 1 2.7730 -1.0677 7.0205 47 1 2.2778 -2.7623 6.7987 48 1 4.3220 0.6610 6.1632 49 1 5.6630 0.6138 4.9766 50 1 5.6475 -0.7562 7.4264 51 1 6.6725 -1.1796 6.0286 52 1 7.9422 -2.6269 8.3122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049550857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:57 Heat of formation + Delta-G solvation = 9.328789 kcal Electronic energy + Delta-G solvation = -31057.238292 eV Core-core repulsion = 27214.678001 eV Total energy + Delta-G solvation = -3842.560291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.69 seconds Orbital eigenvalues (eV) -40.71015 -39.51241 -37.74950 -35.37269 -34.43338 -32.83321 -32.56273 -32.07322 -29.67428 -29.15668 -28.49485 -27.44613 -24.52059 -24.36895 -23.92063 -22.30921 -21.90489 -20.95736 -20.19431 -19.67280 -18.05691 -17.19620 -16.89058 -16.54413 -16.20708 -15.51314 -15.15873 -14.86090 -14.72930 -14.24198 -14.04042 -13.87688 -13.81356 -13.59735 -13.45823 -13.15253 -13.07679 -12.91465 -12.53214 -12.24348 -12.15126 -11.97173 -11.90897 -11.84516 -11.44091 -11.36965 -11.08160 -10.95797 -10.89721 -10.79396 -10.75888 -10.65944 -10.44987 -10.09541 -10.04969 -9.64971 -9.56504 -9.51818 -8.84172 -8.62829 -8.59394 -8.27572 -6.85685 -5.70613 -3.05391 1.27431 1.35060 2.79266 3.19689 3.40342 3.45182 3.47044 3.72875 4.48306 4.51797 4.62975 4.67566 4.79854 4.83383 4.96744 5.02526 5.08486 5.13239 5.20562 5.26043 5.29360 5.37622 5.42658 5.45702 5.48317 5.53167 5.56639 5.64720 5.70447 5.75244 5.78064 5.90769 5.91682 5.99747 6.02648 6.09585 6.11034 6.24620 6.30692 6.39422 6.41090 6.44134 6.59126 6.59731 6.60330 6.76449 6.94890 7.00844 7.11543 7.57596 7.57797 7.66629 7.84295 8.25521 8.41075 9.21508 9.81395 10.46497 11.40190 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002728 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.340547 B =10262.056096 C =10666.384735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.106 4.106 10 C 0.506 3.494 11 O -0.529 6.529 12 N -0.589 5.589 13 C 0.107 3.893 14 C -0.131 4.131 15 C -0.130 4.130 16 C 0.162 3.838 17 H 0.054 0.946 18 C 0.138 3.862 19 H 0.090 0.910 20 C -0.149 4.149 21 C 0.180 3.820 22 N -0.596 5.596 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.920 5.920 27 Si 0.912 3.088 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.061 0.939 50 H 0.040 0.960 51 H 0.052 0.948 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 11.236 -13.548 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.146 4.146 10 C 0.293 3.707 11 O -0.405 6.405 12 N -0.321 5.321 13 C -0.016 4.016 14 C -0.170 4.170 15 C -0.171 4.171 16 C 0.053 3.947 17 H 0.072 0.928 18 C 0.033 3.967 19 H 0.108 0.892 20 C -0.189 4.189 21 C 0.055 3.945 22 N -0.320 5.320 23 C -0.355 4.355 24 H 0.096 0.904 25 C -0.203 4.203 26 N -0.567 5.567 27 Si 0.742 3.258 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.666 11.101 -13.695 23.584 hybrid contribution 0.373 -0.742 0.625 1.040 sum -15.293 10.359 -13.069 22.627 Atomic orbital electron populations 1.21767 0.94730 1.01821 1.02029 1.20574 0.95888 0.92912 1.03313 1.19662 0.98365 0.95674 0.92618 1.20964 1.00243 0.95182 0.97305 1.21082 0.99921 0.94852 0.97965 1.21047 1.00743 0.99955 0.92569 1.20971 0.98654 0.94497 0.98153 1.19150 0.99788 0.93927 0.93165 1.20821 0.97940 0.99987 0.95820 1.20528 0.89361 0.80079 0.80740 1.90723 1.31086 1.62396 1.56294 1.47118 1.13715 1.48683 1.22624 1.21525 0.85050 0.98652 0.96338 1.21837 0.99243 0.95824 1.00119 1.22120 0.94599 1.01542 0.98818 1.20898 0.88627 0.93594 0.91587 0.92849 1.21082 0.85180 0.92050 0.98360 0.89166 1.22969 0.98698 0.99121 0.98109 1.21052 0.94477 0.82517 0.96491 1.44510 1.24242 1.06395 1.56863 1.19009 1.06506 0.85778 1.24256 0.90435 1.24808 0.97590 0.97468 1.00447 1.69975 1.16925 1.27072 1.42733 0.86121 0.78212 0.82963 0.78460 1.21594 1.21710 1.20724 0.92241 0.92566 0.92544 0.90982 0.90886 0.86304 0.86346 0.86267 0.86277 0.87885 0.88255 0.90447 0.91904 0.91154 0.91711 0.91979 0.91887 0.92697 0.92024 0.94217 0.93007 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.72 37.16 0.36 -0.80 16 2 C -0.09 -0.92 5.38 -27.89 -0.15 -1.07 16 3 C -0.06 -0.74 5.13 -104.62 -0.54 -1.27 16 4 C -0.12 -1.28 9.68 -39.58 -0.38 -1.66 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 6 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 7 C -0.10 -1.20 9.68 -39.58 -0.38 -1.58 16 8 C -0.06 -0.72 4.37 -104.63 -0.46 -1.17 16 9 C -0.11 -1.15 3.49 -29.04 -0.10 -1.25 16 10 C 0.51 7.61 6.78 -10.98 -0.07 7.54 16 11 O -0.53 -10.19 15.29 5.56 0.08 -10.11 16 12 N -0.59 -8.83 2.80 -167.58 -0.47 -9.30 16 13 C 0.11 1.23 6.06 -4.43 -0.03 1.20 16 14 C -0.13 -1.62 6.10 -26.74 -0.16 -1.78 16 15 C -0.13 -2.23 5.31 -26.79 -0.14 -2.38 16 16 C 0.16 3.27 3.29 -67.20 -0.22 3.05 16 17 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.14 2.60 2.75 -68.48 -0.19 2.41 16 19 H 0.09 1.93 7.05 -51.93 -0.37 1.57 16 20 C -0.15 -3.01 6.44 -25.62 -0.17 -3.18 16 21 C 0.18 4.44 5.39 -3.28 -0.02 4.42 16 22 N -0.60 -14.96 2.93 -163.73 -0.48 -15.44 16 23 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 24 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 25 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 26 N -0.92 -27.05 10.29 55.49 0.57 -26.48 16 27 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 6.80 -51.93 -0.35 0.06 16 33 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.29 16 35 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.10 0.91 4.80 -51.93 -0.25 0.66 16 41 H 0.10 0.86 7.94 -51.93 -0.41 0.45 16 42 H 0.08 0.64 5.81 -51.93 -0.30 0.34 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.15 8.02 -51.93 -0.42 0.73 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 51 H 0.05 1.44 7.25 -51.93 -0.38 1.06 16 52 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -32.57 399.02 -11.66 -44.23 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.66 Total: 1.57 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -3.70 Total: -7.54 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.38 Total: -51.23 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.57 -11.66 -44.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049550857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.563 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.69 seconds