Wall clock time and date at job start Wed Apr 1 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47530 * 2 1 4 4 C 1.38263 * 119.99707 * 265.02179 * 3 2 1 5 5 C 1.38213 * 119.99642 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.38209 * 119.99766 * 359.70252 * 6 5 4 8 8 C 1.38208 * 119.99904 * 84.99647 * 3 2 1 9 9 C 1.50700 * 120.00351 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.46932 * 85.00095 * 9 8 3 11 11 O 1.21282 * 119.99855 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99845 * 180.02562 * 10 9 8 13 13 C 1.45730 * 117.75919 * 0.02562 * 12 10 9 14 14 C 1.53051 * 109.54260 * 141.07548 * 13 12 10 15 15 C 1.52942 * 108.49869 * 53.80520 * 14 13 12 16 16 C 1.52936 * 109.79003 * 294.01096 * 15 14 13 17 17 H 1.08994 * 110.50665 * 292.89801 * 16 15 14 18 18 C 1.44179 * 117.74705 * 180.02562 * 12 10 9 19 19 H 1.08999 * 108.70088 * 333.01427 * 18 12 10 20 20 C 1.54067 * 111.78106 * 93.58184 * 18 12 10 21 21 C 1.54056 * 103.74257 * 153.25181 * 20 18 12 22 22 N 1.46884 * 107.70758 * 342.86518 * 21 20 18 23 23 C 1.36934 * 125.58284 * 177.00619 * 22 21 20 24 24 H 1.08003 * 120.00178 * 180.02562 * 23 22 21 25 25 C 1.38818 * 120.00019 * 0.02562 * 23 22 21 26 26 N 1.31625 * 119.99881 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00009 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47270 * 90.00230 * 27 25 23 29 29 H 1.48497 * 109.46942 * 209.99845 * 27 25 23 30 30 H 1.48491 * 109.47326 * 329.99976 * 27 25 23 31 31 H 1.09002 * 109.47286 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47343 * 300.00309 * 1 2 3 33 33 H 1.09011 * 109.46747 * 60.00108 * 1 2 3 34 34 H 1.09003 * 109.47279 * 239.99451 * 2 1 3 35 35 H 1.09006 * 109.47202 * 119.99793 * 2 1 3 36 36 H 1.07999 * 119.99857 * 359.97438 * 4 3 2 37 37 H 1.07999 * 119.99850 * 180.02562 * 5 4 3 38 38 H 1.07998 * 119.99381 * 179.97438 * 6 5 4 39 39 H 1.08004 * 119.99826 * 180.29268 * 7 6 5 40 40 H 1.08998 * 109.46812 * 325.00515 * 9 8 3 41 41 H 1.09001 * 109.47296 * 205.00168 * 9 8 3 42 42 H 1.09002 * 109.46027 * 21.05355 * 13 12 10 43 43 H 1.09000 * 109.45364 * 261.09167 * 13 12 10 44 44 H 1.08999 * 109.63233 * 173.51259 * 14 13 12 45 45 H 1.09005 * 109.62873 * 293.90289 * 14 13 12 46 46 H 1.08995 * 109.41806 * 54.10694 * 15 14 13 47 47 H 1.08994 * 109.41982 * 173.97944 * 15 14 13 48 48 H 1.08997 * 110.57169 * 34.68318 * 20 18 12 49 49 H 1.08998 * 110.69054 * 271.87765 * 20 18 12 50 50 H 1.09002 * 109.80735 * 223.31756 * 21 20 18 51 51 H 1.09001 * 109.81034 * 102.41714 * 21 20 18 52 52 H 0.96992 * 120.00102 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0378 -1.1929 5 6 2.8211 3.3411 -1.1929 6 6 2.9536 4.0275 -0.0001 7 6 2.6200 3.4124 1.1918 8 6 2.1644 2.1071 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9860 0.6378 2.9874 11 8 4.0161 0.6186 2.3475 12 7 2.8962 -0.0532 4.1411 13 6 1.6356 0.0038 4.8701 14 6 1.3223 -1.3736 5.4593 15 6 2.5247 -1.8330 6.2853 16 6 3.7256 -2.0646 5.3671 17 1 3.5438 -2.9128 4.7072 18 6 4.0541 -0.7981 4.5692 19 1 4.6391 -1.0701 3.6907 20 6 4.9365 0.0200 5.5313 21 6 5.6476 -1.0531 6.3776 22 7 4.9079 -2.3118 6.2164 23 6 5.2577 -3.5173 6.7637 24 1 4.6458 -4.3892 6.5855 25 6 6.3989 -3.6187 7.5475 26 7 7.1450 -2.5562 7.7642 27 14 6.8765 -5.2633 8.2935 28 1 7.7596 -5.9965 7.3513 29 1 7.5968 -5.0363 9.5721 30 1 5.6529 -6.0644 8.5502 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.2577 1.5015 -2.1246 37 1 3.0773 3.8232 -2.1248 38 1 3.3137 5.0456 -0.0002 39 1 2.7190 3.9502 2.1232 40 1 0.9582 0.7682 2.3354 41 1 1.5425 2.1905 3.2321 42 1 0.8361 0.2984 4.1904 43 1 1.7148 0.7338 5.6756 44 1 0.4424 -1.3066 6.0992 45 1 1.1355 -2.0829 4.6530 46 1 2.7730 -1.0677 7.0205 47 1 2.2778 -2.7623 6.7987 48 1 4.3220 0.6610 6.1632 49 1 5.6630 0.6138 4.9766 50 1 5.6475 -0.7562 7.4264 51 1 6.6725 -1.1796 6.0286 52 1 7.9422 -2.6269 8.3122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049550857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:52 Heat of formation + Delta-G solvation = -7.616739 kcal Electronic energy + Delta-G solvation = -31057.973105 eV Core-core repulsion = 27214.678001 eV Total energy + Delta-G solvation = -3843.295104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.57 seconds Orbital eigenvalues (eV) -41.90811 -40.51305 -39.14191 -36.85438 -35.19884 -34.33565 -33.88019 -33.38445 -31.01649 -30.35184 -29.97783 -28.49748 -26.35080 -25.74883 -24.67420 -23.41849 -23.00652 -22.14383 -21.75835 -20.87226 -19.43449 -18.76998 -18.36950 -17.40932 -17.07941 -16.80660 -16.72909 -16.15303 -15.92340 -15.84335 -15.20924 -15.06937 -14.97073 -14.62755 -14.40751 -14.27874 -14.15547 -13.95894 -13.79274 -13.78509 -13.54204 -13.12473 -12.98256 -12.84904 -12.79719 -12.65639 -12.59766 -12.33979 -12.29859 -12.11813 -12.05264 -11.90725 -11.66261 -11.60638 -11.57334 -11.48602 -11.18205 -10.78940 -10.71532 -9.65183 -9.58329 -9.43610 -8.92144 -7.85128 -5.22007 0.46220 0.55362 1.44564 1.47007 1.55355 1.64925 2.02197 2.49125 2.90004 3.32321 3.52628 3.62801 3.75314 3.85095 3.89337 3.98844 4.02872 4.05023 4.09861 4.16733 4.19974 4.32584 4.33991 4.37798 4.51571 4.54283 4.59238 4.62187 4.65642 4.69239 4.75418 4.78636 4.84219 4.87079 4.96641 5.06553 5.07907 5.12089 5.19465 5.22307 5.26886 5.37404 5.41316 5.43417 5.54923 5.62191 5.62953 5.66248 5.71570 5.71893 5.79023 6.17518 6.18300 6.45166 7.07605 7.23870 7.74764 8.39188 9.24857 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002728 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.340547 B =10262.056096 C =10666.384735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.078 4.078 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.080 4.080 9 C -0.095 4.095 10 C 0.505 3.495 11 O -0.579 6.579 12 N -0.588 5.588 13 C 0.100 3.900 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.157 3.843 17 H 0.047 0.953 18 C 0.157 3.843 19 H 0.057 0.943 20 C -0.133 4.133 21 C 0.193 3.807 22 N -0.616 5.616 23 C -0.235 4.235 24 H 0.084 0.916 25 C -0.067 4.067 26 N -0.953 5.953 27 Si 0.979 3.021 28 H -0.289 1.289 29 H -0.295 1.295 30 H -0.265 1.265 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.009 0.991 51 H 0.008 0.992 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.025 11.945 -14.252 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.080 4.080 9 C -0.134 4.134 10 C 0.295 3.705 11 O -0.458 6.458 12 N -0.320 5.320 13 C -0.021 4.021 14 C -0.160 4.160 15 C -0.161 4.161 16 C 0.050 3.950 17 H 0.065 0.935 18 C 0.050 3.950 19 H 0.076 0.924 20 C -0.173 4.173 21 C 0.067 3.933 22 N -0.341 5.341 23 C -0.364 4.364 24 H 0.102 0.898 25 C -0.260 4.260 26 N -0.602 5.602 27 Si 0.807 3.193 28 H -0.216 1.216 29 H -0.221 1.221 30 H -0.190 1.190 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.028 0.972 51 H 0.027 0.973 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.338 11.814 -14.412 26.856 hybrid contribution 1.513 -0.951 0.754 1.940 sum -17.825 10.863 -13.659 24.946 Atomic orbital electron populations 1.21738 0.92660 1.02619 1.02749 1.20569 0.97649 0.92057 1.02299 1.19932 0.98600 0.96260 0.93037 1.21253 1.00316 0.95731 0.97822 1.21414 0.99241 0.94806 0.98926 1.21370 1.00550 1.00980 0.92517 1.21256 0.98697 0.94755 0.99048 1.19359 1.00609 0.94361 0.93705 1.20855 0.96217 1.00362 0.95938 1.21328 0.89959 0.79434 0.79823 1.90707 1.33446 1.64003 1.57640 1.47155 1.13703 1.47995 1.23126 1.21918 0.84175 0.98486 0.97516 1.21809 0.97817 0.96288 1.00039 1.21908 0.95168 1.00747 0.98240 1.21111 0.88321 0.93975 0.91617 0.93538 1.20525 0.86528 0.91620 0.96291 0.92433 1.22757 0.98758 0.97889 0.97875 1.20693 0.93145 0.84114 0.95302 1.44771 1.26022 1.05869 1.57459 1.19402 1.06423 0.86920 1.23669 0.89773 1.25672 0.97895 1.00901 1.01553 1.70204 1.17210 1.29108 1.43660 0.85065 0.78111 0.79006 0.77080 1.21608 1.22146 1.18991 0.91369 0.91583 0.92092 0.91210 0.92705 0.84956 0.84256 0.84423 0.85185 0.85358 0.85262 0.85956 0.90582 0.87607 0.91046 0.93368 0.93135 0.90663 0.92473 0.97247 0.97348 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.72 71.98 0.70 -1.13 16 2 C -0.09 -1.69 5.38 29.85 0.16 -1.53 16 3 C -0.08 -1.71 5.13 -19.87 -0.10 -1.81 16 4 C -0.13 -2.70 9.68 22.27 0.22 -2.48 16 5 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 6 C -0.14 -2.64 10.05 22.27 0.22 -2.42 16 7 C -0.12 -2.52 9.68 22.27 0.22 -2.31 16 8 C -0.08 -1.75 4.37 -19.87 -0.09 -1.84 16 9 C -0.09 -1.73 3.49 29.10 0.10 -1.63 16 10 C 0.50 14.35 6.78 87.66 0.59 14.95 16 11 O -0.58 -22.45 15.29 -3.03 -0.05 -22.50 16 12 N -0.59 -16.47 2.80 -802.47 -2.25 -18.71 16 13 C 0.10 1.84 6.06 86.54 0.52 2.36 16 14 C -0.12 -2.49 6.10 30.59 0.19 -2.31 16 15 C -0.12 -3.97 5.31 30.55 0.16 -3.81 16 16 C 0.16 6.40 3.29 44.83 0.15 6.55 16 17 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 18 C 0.16 5.97 2.75 45.87 0.13 6.10 16 19 H 0.06 2.58 7.05 -2.39 -0.02 2.56 16 20 C -0.13 -5.51 6.44 31.31 0.20 -5.31 16 21 C 0.19 10.10 5.39 86.66 0.47 10.57 16 22 N -0.62 -32.16 2.93 -671.92 -1.97 -34.13 16 23 C -0.24 -13.28 10.27 84.04 0.86 -12.42 16 24 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 25 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 26 N -0.95 -58.80 10.29 21.65 0.22 -58.57 16 27 Si 0.98 46.47 29.55 68.60 2.03 48.49 16 28 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 29 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 30 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.72 6.80 -2.39 -0.02 0.71 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 34 H 0.07 1.31 8.05 -2.39 -0.02 1.29 16 35 H 0.05 1.24 6.42 -2.38 -0.02 1.22 16 36 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.13 1.68 4.80 -2.39 -0.01 1.66 16 41 H 0.13 1.61 7.94 -2.39 -0.02 1.59 16 42 H 0.12 1.25 5.81 -2.39 -0.01 1.23 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.01 0.54 7.60 -2.39 -0.02 0.52 16 51 H 0.01 0.50 7.25 -2.39 -0.02 0.48 16 52 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -76.76 399.02 4.27 -72.49 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.89 Total: 16.98 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.39 Total: -4.05 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -3.99 Total: -111.42 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -76.76 4.27 -72.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049550857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.872 kcal (2) G-P(sol) polarization free energy of solvation -76.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.57 seconds