Wall clock time and date at job start Wed Apr 1 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46909 * 2 1 4 4 C 1.38260 * 119.99863 * 264.97566 * 3 2 1 5 5 C 1.38212 * 119.99863 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99858 * 0.02562 * 5 4 3 7 7 C 1.38213 * 120.00515 * 359.81170 * 6 5 4 8 8 C 1.38211 * 120.00229 * 85.00381 * 3 2 1 9 9 C 1.50703 * 119.99522 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.47131 * 85.00449 * 9 8 3 11 11 O 1.21282 * 120.00162 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00047 * 179.97438 * 10 9 8 13 13 C 1.47850 * 122.22982 * 359.97097 * 12 10 9 14 14 C 1.52721 * 111.05381 * 127.53245 * 13 12 10 15 15 C 1.53863 * 111.52252 * 48.54486 * 14 13 12 16 16 C 1.51085 * 107.34553 * 303.06453 * 15 14 13 17 17 H 1.09001 * 108.73362 * 308.53253 * 16 15 14 18 18 C 1.45726 * 122.22562 * 179.97438 * 12 10 9 19 19 H 1.09000 * 111.06891 * 119.45102 * 18 12 10 20 20 C 1.53428 * 116.37824 * 350.08525 * 18 12 10 21 21 C 1.55471 * 101.67224 * 207.27115 * 20 18 12 22 22 N 1.45024 * 119.19746 * 183.88432 * 16 15 14 23 23 C 1.36934 * 126.55640 * 28.78131 * 22 16 15 24 24 H 1.07994 * 120.00557 * 0.02562 * 23 22 16 25 25 C 1.38818 * 119.99658 * 179.97438 * 23 22 16 26 26 N 1.31619 * 119.99905 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00008 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47157 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47075 * 120.00326 * 27 25 23 30 30 H 1.48506 * 109.47075 * 240.00275 * 27 25 23 31 31 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46752 * 299.99902 * 1 2 3 33 33 H 1.09002 * 109.47210 * 60.00162 * 1 2 3 34 34 H 1.09003 * 109.46752 * 240.00098 * 2 1 3 35 35 H 1.09002 * 109.47210 * 119.99838 * 2 1 3 36 36 H 1.07996 * 119.99860 * 0.02562 * 4 3 2 37 37 H 1.07994 * 120.00184 * 180.02562 * 5 4 3 38 38 H 1.08001 * 119.99963 * 180.02562 * 6 5 4 39 39 H 1.07993 * 120.00643 * 180.22844 * 7 6 5 40 40 H 1.08996 * 109.47645 * 325.00422 * 9 8 3 41 41 H 1.09006 * 109.47016 * 204.99700 * 9 8 3 42 42 H 1.08998 * 109.16562 * 247.94306 * 13 12 10 43 43 H 1.09003 * 109.15878 * 7.18378 * 13 12 10 44 44 H 1.09001 * 109.06521 * 169.06953 * 14 13 12 45 45 H 1.09003 * 109.07398 * 288.01684 * 14 13 12 46 46 H 1.08999 * 109.88253 * 62.52367 * 15 14 13 47 47 H 1.09003 * 109.88388 * 183.53448 * 15 14 13 48 48 H 1.09005 * 110.98360 * 325.36161 * 20 18 12 49 49 H 1.08993 * 110.99307 * 89.16909 * 20 18 12 50 50 H 1.08997 * 109.95630 * 263.21650 * 21 20 18 51 51 H 1.08999 * 109.99082 * 141.99067 * 21 20 18 52 52 H 0.97003 * 120.00053 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0376 -1.1928 5 6 2.8217 3.3409 -1.1928 6 6 2.9533 4.0276 -0.0001 7 6 2.6209 3.4122 1.1920 8 6 2.1644 2.1072 1.1924 9 6 1.8055 1.4348 2.4924 10 6 2.9844 0.6373 2.9878 11 8 4.0145 0.6166 2.3478 12 7 2.8942 -0.0528 4.1419 13 6 1.6634 -0.0617 4.9611 14 6 1.2214 -1.4902 5.2717 15 6 2.3920 -2.3430 5.7911 16 6 3.4794 -2.3015 4.7429 17 1 3.0458 -2.5650 3.7782 18 6 4.0032 -0.8399 4.6654 19 1 4.3135 -0.4765 5.6450 20 6 5.2008 -1.0386 3.7272 21 6 5.7787 -2.3891 4.2363 22 7 4.6776 -3.0955 4.9348 23 6 4.7736 -4.2729 5.6273 24 1 3.8980 -4.6963 6.0967 25 6 5.9963 -4.9229 5.7250 26 7 7.0634 -4.4072 5.1524 27 14 6.1272 -6.5294 6.6691 28 1 4.7945 -6.8937 7.2135 29 1 6.5991 -7.6024 5.7573 30 1 7.0921 -6.3697 7.7866 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.2584 1.5013 -2.1245 37 1 3.0785 3.8229 -2.1245 38 1 3.3124 5.0461 -0.0001 39 1 2.7202 3.9498 2.1234 40 1 0.9569 0.7690 2.3352 41 1 1.5420 2.1910 3.2320 42 1 1.8521 0.4658 5.8961 43 1 0.8680 0.4478 4.4172 44 1 0.4370 -1.4637 6.0281 45 1 0.8243 -1.9454 4.3644 46 1 2.7646 -1.9295 6.7283 47 1 2.0626 -3.3706 5.9445 48 1 4.8750 -1.1196 2.6901 49 1 5.9267 -0.2341 3.8449 50 1 6.6000 -2.2049 4.9288 51 1 6.1290 -2.9857 3.3941 52 1 7.9179 -4.8612 5.2210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049550858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:18 Heat of formation + Delta-G solvation = 16.882959 kcal Electronic energy + Delta-G solvation = -31340.353801 eV Core-core repulsion = 27498.121083 eV Total energy + Delta-G solvation = -3842.232717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.57617 -39.46847 -37.58558 -35.40700 -34.37326 -32.77754 -32.56645 -31.97191 -29.62727 -29.07147 -28.27600 -27.46343 -24.50881 -24.37783 -23.83567 -22.16047 -21.48569 -21.03714 -20.35107 -19.64574 -18.68436 -16.84266 -16.52991 -16.16550 -16.05229 -15.66748 -15.07106 -14.91458 -14.63505 -14.22414 -14.11035 -13.89140 -13.68881 -13.51687 -13.45934 -13.11912 -13.02809 -12.93527 -12.41614 -12.26174 -12.15663 -11.91967 -11.86431 -11.79152 -11.54996 -11.36385 -11.11277 -10.86083 -10.84391 -10.74845 -10.68080 -10.50510 -10.41325 -10.05870 -9.96650 -9.81291 -9.59806 -9.05265 -8.78343 -8.60330 -8.52400 -8.18105 -6.80167 -5.67947 -3.02188 1.31202 1.38697 2.87962 3.19485 3.40975 3.45918 3.48747 3.75821 4.50760 4.56589 4.67809 4.69795 4.83122 4.87502 4.92019 5.06136 5.08700 5.15953 5.26640 5.27373 5.31666 5.38981 5.42124 5.46039 5.50890 5.57440 5.61909 5.66702 5.78784 5.80649 5.85294 5.89173 5.96034 6.01282 6.06166 6.10983 6.17593 6.28076 6.30994 6.41285 6.44576 6.47252 6.58715 6.64162 6.74351 6.82159 6.92683 6.98961 7.21931 7.61149 7.68257 7.76151 7.87255 8.27515 8.49640 9.21635 9.85574 10.54068 11.44004 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.002968 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.882067 B = 9432.363541 C = 9835.373145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.061 4.061 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.059 4.059 9 C -0.107 4.107 10 C 0.517 3.483 11 O -0.521 6.521 12 N -0.602 5.602 13 C 0.110 3.890 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.159 3.841 17 H 0.017 0.983 18 C 0.117 3.883 19 H 0.078 0.922 20 C -0.128 4.128 21 C 0.172 3.828 22 N -0.593 5.593 23 C -0.225 4.225 24 H 0.079 0.921 25 C -0.008 4.008 26 N -0.919 5.919 27 Si 0.909 3.091 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.055 0.945 51 H 0.038 0.962 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.671 15.672 -7.230 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.061 4.061 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.059 4.059 9 C -0.147 4.147 10 C 0.304 3.696 11 O -0.397 6.397 12 N -0.336 5.336 13 C -0.013 4.013 14 C -0.168 4.168 15 C -0.154 4.154 16 C 0.049 3.951 17 H 0.034 0.966 18 C 0.013 3.987 19 H 0.096 0.904 20 C -0.166 4.166 21 C 0.048 3.952 22 N -0.318 5.318 23 C -0.354 4.354 24 H 0.097 0.903 25 C -0.204 4.204 26 N -0.566 5.566 27 Si 0.740 3.260 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.056 0.944 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.938 15.489 -7.538 22.801 hybrid contribution 0.180 -0.853 0.626 1.073 sum -14.758 14.636 -6.913 21.904 Atomic orbital electron populations 1.21761 0.94784 1.01834 1.01904 1.20580 0.95840 0.92859 1.03473 1.19673 0.98186 0.95670 0.92600 1.20972 1.00168 0.95160 0.97351 1.21073 0.99948 0.94852 0.97948 1.21031 1.00872 0.99904 0.92587 1.20945 0.98827 0.94497 0.98070 1.19133 0.99756 0.93884 0.93153 1.20809 0.98181 0.99939 0.95725 1.20299 0.89277 0.79638 0.80357 1.90733 1.30767 1.62297 1.55861 1.48042 1.14341 1.48781 1.22440 1.21704 0.86395 0.97782 0.95393 1.21900 0.98612 0.94825 1.01488 1.21423 0.95059 0.99702 0.99221 1.20753 0.89066 0.89493 0.95746 0.96617 1.22378 0.87805 0.91461 0.97053 0.90447 1.22937 0.95367 0.98820 0.99497 1.21727 0.90293 0.87514 0.95716 1.44079 1.03520 1.22756 1.61412 1.19027 0.94608 0.96186 1.25538 0.90343 1.24809 0.95713 0.99095 1.00811 1.69965 0.99307 1.39411 1.47940 0.86083 0.77407 0.83320 0.79173 1.20555 1.21808 1.21802 0.92226 0.92649 0.92590 0.90945 0.90771 0.86296 0.86375 0.86337 0.86380 0.88090 0.88515 0.91558 0.90468 0.90946 0.91846 0.91816 0.91512 0.90014 0.92226 0.92645 0.94352 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.72 37.16 0.36 -0.92 16 2 C -0.09 -1.02 5.38 -27.88 -0.15 -1.17 16 3 C -0.06 -0.75 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.34 9.68 -39.58 -0.38 -1.72 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 7 C -0.11 -1.22 9.68 -39.58 -0.38 -1.60 16 8 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 9 C -0.11 -1.19 3.58 -29.03 -0.10 -1.29 16 10 C 0.52 7.93 6.89 -10.99 -0.08 7.86 16 11 O -0.52 -10.04 12.87 5.56 0.07 -9.97 16 12 N -0.60 -9.12 2.91 -164.02 -0.48 -9.60 16 13 C 0.11 1.23 6.32 -3.44 -0.02 1.21 16 14 C -0.13 -1.56 5.93 -26.42 -0.16 -1.71 16 15 C -0.12 -1.94 5.45 -27.25 -0.15 -2.08 16 16 C 0.16 3.29 2.57 -68.38 -0.18 3.11 16 17 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 18 C 0.12 2.22 3.33 -66.83 -0.22 2.00 16 19 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 20 C -0.13 -2.75 5.01 -25.20 -0.13 -2.88 16 21 C 0.17 4.40 5.47 -1.74 -0.01 4.39 16 22 N -0.59 -15.24 3.35 -163.38 -0.55 -15.79 16 23 C -0.23 -6.23 9.94 -15.06 -0.15 -6.38 16 24 H 0.08 2.08 7.31 -52.49 -0.38 1.69 16 25 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 26 N -0.92 -27.40 10.46 55.49 0.58 -26.82 16 27 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.45 6.80 -51.93 -0.35 0.10 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.07 0.99 6.42 -51.93 -0.33 0.65 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.10 0.97 5.24 -51.93 -0.27 0.69 16 41 H 0.10 0.85 7.92 -51.93 -0.41 0.43 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 47 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 48 H 0.08 1.85 6.21 -51.93 -0.32 1.53 16 49 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.06 1.54 7.18 -51.93 -0.37 1.17 16 51 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16 52 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -33.07 395.02 -11.69 -44.76 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.62 Total: 1.72 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -3.63 Total: -7.41 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.44 Total: -52.21 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.07 -11.69 -44.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049550858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.643 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds