Wall clock time and date at job start Wed Apr 1 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47046 * 2 1 4 4 C 1.38260 * 119.99704 * 89.99718 * 3 2 1 5 5 C 1.38214 * 119.99710 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.38205 * 119.99910 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00207 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47156 * 89.99654 * 8 7 6 10 10 O 1.21284 * 119.99861 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00025 * 180.02562 * 9 8 7 12 12 C 1.48160 * 122.40904 * 359.15567 * 11 9 8 13 13 C 1.52710 * 111.65378 * 231.98245 * 12 11 9 14 14 C 1.53871 * 111.52569 * 311.89255 * 13 12 11 15 15 C 1.51089 * 107.34167 * 56.92938 * 14 13 12 16 16 H 1.09003 * 108.30417 * 51.24274 * 15 14 13 17 17 C 1.45728 * 122.23276 * 180.02562 * 11 9 8 18 18 H 1.09000 * 111.06576 * 241.36067 * 17 11 9 19 19 C 1.53429 * 116.37470 * 9.86069 * 17 11 9 20 20 C 1.55474 * 101.70438 * 153.53534 * 19 17 11 21 21 N 1.45025 * 119.18642 * 176.11673 * 15 14 13 22 22 C 1.36932 * 126.56225 * 331.24335 * 21 15 14 23 23 H 1.07998 * 120.00325 * 359.97438 * 22 21 15 24 24 C 1.38815 * 120.00083 * 179.97438 * 22 21 15 25 25 N 1.31621 * 119.99825 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00130 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46759 * 90.00245 * 26 24 22 28 28 H 1.48505 * 109.47108 * 209.99981 * 26 24 22 29 29 H 1.48500 * 109.47026 * 330.00033 * 26 24 22 30 30 C 1.38211 * 120.00394 * 270.16174 * 3 2 1 31 31 H 1.09006 * 109.46753 * 59.99925 * 1 2 3 32 32 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47516 * 300.00576 * 1 2 3 34 34 H 1.09004 * 109.47295 * 239.99931 * 2 1 3 35 35 H 1.09006 * 109.46753 * 120.00075 * 2 1 3 36 36 H 1.07996 * 120.00145 * 0.02562 * 4 3 2 37 37 H 1.08000 * 120.00041 * 180.02562 * 5 4 3 38 38 H 1.07999 * 119.99366 * 180.02562 * 6 5 4 39 39 H 1.09006 * 109.46493 * 329.99828 * 8 7 6 40 40 H 1.08995 * 109.47024 * 210.00319 * 8 7 6 41 41 H 1.09000 * 108.51574 * 111.62566 * 12 11 9 42 42 H 1.08997 * 109.15777 * 352.76906 * 12 11 9 43 43 H 1.09006 * 109.06979 * 191.36949 * 13 12 11 44 44 H 1.08995 * 109.01743 * 72.38562 * 13 12 11 45 45 H 1.08995 * 109.88955 * 297.46754 * 14 13 12 46 46 H 1.09003 * 109.88322 * 176.38403 * 14 13 12 47 47 H 1.09002 * 110.98780 * 271.65006 * 19 17 11 48 48 H 1.09004 * 110.98908 * 35.42200 * 19 17 11 49 49 H 1.08997 * 109.95740 * 96.80102 * 20 19 17 50 50 H 1.08998 * 109.96118 * 218.04054 * 20 19 17 51 51 H 0.96997 * 120.00360 * 179.97438 * 25 24 22 52 52 H 1.08003 * 119.99767 * 0.06691 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7239 3.3754 1.1974 6 6 2.9554 4.0269 0.0000 7 6 2.7261 3.3750 -1.1969 8 6 2.9790 4.0848 -2.5020 9 6 4.4026 3.8473 -2.9354 10 8 5.1393 3.1682 -2.2519 11 7 4.8572 4.3897 -4.0823 12 6 3.9990 5.2123 -4.9666 13 6 4.0356 4.7141 -6.4097 14 6 5.4787 4.4791 -6.8894 15 6 6.1165 3.4972 -5.9345 16 1 5.4570 2.6345 -5.8393 17 6 6.2239 4.1913 -4.5477 18 1 6.7553 5.1404 -4.6184 19 6 7.0559 3.1459 -3.7933 20 6 8.0716 2.7041 -4.8843 21 7 7.4627 3.0268 -6.1983 22 6 8.0577 2.9031 -7.4254 23 1 7.5127 3.1689 -8.3191 24 6 9.3614 2.4359 -7.5207 25 7 10.0258 2.1124 -6.4315 26 14 10.1728 2.2664 -9.1947 27 1 10.8653 3.5340 -9.5396 28 1 11.1600 1.1576 -9.1563 29 1 9.1383 1.9730 -10.2188 30 6 2.2595 2.0735 -1.1969 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0830 1.5633 2.1327 37 1 2.9042 3.8844 2.1327 38 1 3.3162 5.0448 0.0002 39 1 2.8122 5.1541 -2.3722 40 1 2.2989 3.7006 -3.2622 41 1 4.3552 6.2419 -4.9344 42 1 2.9725 5.1775 -4.6020 43 1 3.5623 5.4548 -7.0543 44 1 3.4813 3.7780 -6.4765 45 1 6.0308 5.4188 -6.8784 46 1 5.4713 4.0643 -7.8974 47 1 7.5678 3.5947 -2.9420 48 1 6.4351 2.3081 -3.4756 49 1 9.0073 3.2502 -4.7644 50 1 8.2540 1.6320 -4.8106 51 1 10.9366 1.7856 -6.4980 52 1 2.0760 1.5657 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049556749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:28 Heat of formation + Delta-G solvation = 13.703669 kcal Electronic energy + Delta-G solvation = -30557.127243 eV Core-core repulsion = 26714.756662 eV Total energy + Delta-G solvation = -3842.370582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.58 seconds Orbital eigenvalues (eV) -40.44085 -39.43095 -37.66437 -35.38190 -34.54263 -32.67318 -32.57180 -31.95026 -29.67054 -29.07644 -28.26702 -27.46000 -24.48961 -24.31755 -24.05904 -22.20163 -21.49180 -21.11130 -20.24806 -19.63099 -18.63429 -16.82993 -16.59594 -16.04642 -15.91758 -15.70446 -15.17916 -14.89546 -14.70330 -14.22302 -14.09439 -13.96059 -13.82282 -13.59725 -13.41379 -13.19852 -12.99525 -12.92314 -12.40581 -12.31465 -12.14979 -11.94437 -11.88116 -11.75665 -11.54998 -11.39526 -11.12083 -10.93469 -10.86622 -10.83028 -10.68836 -10.50363 -10.42114 -10.07919 -9.95929 -9.80637 -9.59328 -9.05752 -8.77768 -8.62288 -8.53884 -8.18484 -6.80447 -5.67736 -3.02131 1.30214 1.38001 2.88144 3.18803 3.41225 3.45913 3.48295 3.74702 4.50753 4.54200 4.59993 4.69822 4.75406 4.89280 4.97768 5.04744 5.07611 5.15378 5.18370 5.28322 5.32527 5.35802 5.39304 5.46173 5.46626 5.53636 5.61426 5.65637 5.71769 5.74090 5.78732 5.89572 5.93527 6.01745 6.03381 6.06997 6.11215 6.28624 6.31379 6.40777 6.42034 6.52875 6.58186 6.59731 6.74332 6.81897 6.92970 6.98090 7.21751 7.60836 7.68281 7.76350 7.87170 8.27550 8.49538 9.21598 9.85544 10.54126 11.44211 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002623 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.339015 B =10670.763168 C =11178.635896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.057 4.057 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.522 6.522 11 N -0.603 5.603 12 C 0.111 3.889 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.016 0.984 17 C 0.117 3.883 18 H 0.077 0.923 19 C -0.128 4.128 20 C 0.172 3.828 21 N -0.592 5.592 22 C -0.226 4.226 23 H 0.078 0.922 24 C -0.008 4.008 25 N -0.919 5.919 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C -0.102 4.102 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.056 0.944 50 H 0.038 0.962 51 H 0.252 0.748 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.730 4.762 11.436 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.398 6.398 11 N -0.336 5.336 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.155 4.155 15 C 0.050 3.950 16 H 0.033 0.967 17 C 0.012 3.988 18 H 0.095 0.905 19 C -0.167 4.167 20 C 0.048 3.952 21 N -0.317 5.317 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.208 1.208 30 C -0.120 4.120 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.074 0.926 50 H 0.056 0.944 51 H 0.063 0.937 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.113 4.296 11.732 23.678 hybrid contribution 0.571 0.024 -1.009 1.160 sum -19.542 4.320 10.723 22.705 Atomic orbital electron populations 1.21741 0.94838 1.01584 1.02080 1.20546 0.96004 0.92809 1.02990 1.19815 0.99211 0.96029 0.93092 1.20962 1.00638 0.94998 0.97320 1.21042 0.99687 0.94998 0.97774 1.20929 0.99866 0.99996 0.92002 1.19268 0.98467 0.94365 0.93660 1.20740 0.95496 1.02061 0.95997 1.20315 0.89047 0.79693 0.80556 1.90736 1.57755 1.37929 1.53349 1.48110 1.12594 1.51742 1.21200 1.21749 0.94387 0.94458 0.90609 1.21890 0.98414 1.01610 0.94880 1.21439 0.93799 1.00124 1.00117 1.20716 0.88881 0.93665 0.91744 0.96683 1.22349 0.80961 0.98880 0.96565 0.90497 1.22939 0.97893 0.98178 0.97660 1.21742 0.93382 0.98996 0.81103 1.44077 1.09490 1.75103 1.03033 1.18980 0.95526 1.37609 0.83307 0.90389 1.24811 0.96921 1.01515 0.97166 1.69952 1.11202 1.49832 1.25678 0.86151 0.79208 0.77323 0.83258 1.21644 1.21702 1.20752 1.20835 0.99608 0.93926 0.97600 0.92577 0.92492 0.92681 0.90929 0.91095 0.86455 0.86255 0.86429 0.88335 0.88330 0.91622 0.90423 0.90860 0.91851 0.91793 0.91497 0.92201 0.90147 0.92597 0.94365 0.93733 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.09 -0.78 6.06 -27.88 -0.17 -0.95 16 3 C -0.08 -0.91 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 7 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 8 C -0.10 -1.13 4.27 -29.04 -0.12 -1.25 16 9 C 0.52 7.99 7.69 -10.99 -0.08 7.91 16 10 O -0.52 -10.17 12.88 5.55 0.07 -10.10 16 11 N -0.60 -9.21 2.96 -163.78 -0.48 -9.69 16 12 C 0.11 1.24 6.31 -3.28 -0.02 1.22 16 13 C -0.13 -1.56 5.93 -26.43 -0.16 -1.72 16 14 C -0.12 -1.96 5.45 -27.24 -0.15 -2.11 16 15 C 0.16 3.33 2.60 -68.38 -0.18 3.15 16 16 H 0.02 0.35 8.03 -51.93 -0.42 -0.06 16 17 C 0.12 2.23 3.29 -66.82 -0.22 2.01 16 18 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 19 C -0.13 -2.79 4.97 -25.19 -0.13 -2.91 16 20 C 0.17 4.43 5.47 -1.69 -0.01 4.42 16 21 N -0.59 -15.31 3.35 -163.31 -0.55 -15.86 16 22 C -0.23 -6.27 9.94 -15.06 -0.15 -6.42 16 23 H 0.08 2.07 7.31 -52.49 -0.38 1.68 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -27.50 10.46 55.49 0.58 -26.91 16 26 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 C -0.10 -1.23 9.36 -39.58 -0.37 -1.60 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.10 0.84 7.99 -51.93 -0.42 0.42 16 40 H 0.10 0.89 7.67 -51.93 -0.40 0.49 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.63 6.22 -51.93 -0.32 0.31 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.09 8.12 -51.93 -0.42 0.66 16 46 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.08 1.84 6.26 -51.93 -0.33 1.52 16 49 H 0.06 1.56 7.18 -51.93 -0.37 1.19 16 50 H 0.04 1.08 7.81 -51.93 -0.41 0.68 16 51 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 52 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -33.32 402.37 -11.89 -45.22 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.91 Total: 0.98 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.64 Total: -6.88 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.45 Total: -52.47 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.32 -11.89 -45.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049556749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.923 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.58 seconds