Wall clock time and date at job start Wed Apr 1 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47046 * 2 1 4 4 C 1.38260 * 119.99704 * 89.99718 * 3 2 1 5 5 C 1.38214 * 119.99710 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.38205 * 119.99910 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00207 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47156 * 89.99654 * 8 7 6 10 10 O 1.21284 * 119.99861 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00025 * 180.02562 * 9 8 7 12 12 C 1.48160 * 122.40904 * 359.15567 * 11 9 8 13 13 C 1.52710 * 111.65378 * 231.98245 * 12 11 9 14 14 C 1.53871 * 111.52569 * 311.89255 * 13 12 11 15 15 C 1.51089 * 107.34167 * 56.92938 * 14 13 12 16 16 H 1.09003 * 108.30417 * 51.24274 * 15 14 13 17 17 C 1.45728 * 122.23276 * 180.02562 * 11 9 8 18 18 H 1.09000 * 111.06576 * 241.36067 * 17 11 9 19 19 C 1.53429 * 116.37470 * 9.86069 * 17 11 9 20 20 C 1.55474 * 101.70438 * 153.53534 * 19 17 11 21 21 N 1.45025 * 119.18642 * 176.11673 * 15 14 13 22 22 C 1.36932 * 126.56225 * 331.24335 * 21 15 14 23 23 H 1.07998 * 120.00325 * 359.97438 * 22 21 15 24 24 C 1.38815 * 120.00083 * 179.97438 * 22 21 15 25 25 N 1.31621 * 119.99825 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00130 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46759 * 90.00245 * 26 24 22 28 28 H 1.48505 * 109.47108 * 209.99981 * 26 24 22 29 29 H 1.48500 * 109.47026 * 330.00033 * 26 24 22 30 30 C 1.38211 * 120.00394 * 270.16174 * 3 2 1 31 31 H 1.09006 * 109.46753 * 59.99925 * 1 2 3 32 32 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47516 * 300.00576 * 1 2 3 34 34 H 1.09004 * 109.47295 * 239.99931 * 2 1 3 35 35 H 1.09006 * 109.46753 * 120.00075 * 2 1 3 36 36 H 1.07996 * 120.00145 * 0.02562 * 4 3 2 37 37 H 1.08000 * 120.00041 * 180.02562 * 5 4 3 38 38 H 1.07999 * 119.99366 * 180.02562 * 6 5 4 39 39 H 1.09006 * 109.46493 * 329.99828 * 8 7 6 40 40 H 1.08995 * 109.47024 * 210.00319 * 8 7 6 41 41 H 1.09000 * 108.51574 * 111.62566 * 12 11 9 42 42 H 1.08997 * 109.15777 * 352.76906 * 12 11 9 43 43 H 1.09006 * 109.06979 * 191.36949 * 13 12 11 44 44 H 1.08995 * 109.01743 * 72.38562 * 13 12 11 45 45 H 1.08995 * 109.88955 * 297.46754 * 14 13 12 46 46 H 1.09003 * 109.88322 * 176.38403 * 14 13 12 47 47 H 1.09002 * 110.98780 * 271.65006 * 19 17 11 48 48 H 1.09004 * 110.98908 * 35.42200 * 19 17 11 49 49 H 1.08997 * 109.95740 * 96.80102 * 20 19 17 50 50 H 1.08998 * 109.96118 * 218.04054 * 20 19 17 51 51 H 0.96997 * 120.00360 * 179.97438 * 25 24 22 52 52 H 1.08003 * 119.99767 * 0.06691 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7239 3.3754 1.1974 6 6 2.9554 4.0269 0.0000 7 6 2.7261 3.3750 -1.1969 8 6 2.9790 4.0848 -2.5020 9 6 4.4026 3.8473 -2.9354 10 8 5.1393 3.1682 -2.2519 11 7 4.8572 4.3897 -4.0823 12 6 3.9990 5.2123 -4.9666 13 6 4.0356 4.7141 -6.4097 14 6 5.4787 4.4791 -6.8894 15 6 6.1165 3.4972 -5.9345 16 1 5.4570 2.6345 -5.8393 17 6 6.2239 4.1913 -4.5477 18 1 6.7553 5.1404 -4.6184 19 6 7.0559 3.1459 -3.7933 20 6 8.0716 2.7041 -4.8843 21 7 7.4627 3.0268 -6.1983 22 6 8.0577 2.9031 -7.4254 23 1 7.5127 3.1689 -8.3191 24 6 9.3614 2.4359 -7.5207 25 7 10.0258 2.1124 -6.4315 26 14 10.1728 2.2664 -9.1947 27 1 10.8653 3.5340 -9.5396 28 1 11.1600 1.1576 -9.1563 29 1 9.1383 1.9730 -10.2188 30 6 2.2595 2.0735 -1.1969 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0830 1.5633 2.1327 37 1 2.9042 3.8844 2.1327 38 1 3.3162 5.0448 0.0002 39 1 2.8122 5.1541 -2.3722 40 1 2.2989 3.7006 -3.2622 41 1 4.3552 6.2419 -4.9344 42 1 2.9725 5.1775 -4.6020 43 1 3.5623 5.4548 -7.0543 44 1 3.4813 3.7780 -6.4765 45 1 6.0308 5.4188 -6.8784 46 1 5.4713 4.0643 -7.8974 47 1 7.5678 3.5947 -2.9420 48 1 6.4351 2.3081 -3.4756 49 1 9.0073 3.2502 -4.7644 50 1 8.2540 1.6320 -4.8106 51 1 10.9366 1.7856 -6.4980 52 1 2.0760 1.5657 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049556749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:21 Heat of formation + Delta-G solvation = -4.091913 kcal Electronic energy + Delta-G solvation = -30557.898918 eV Core-core repulsion = 26714.756662 eV Total energy + Delta-G solvation = -3843.142256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.81 seconds Orbital eigenvalues (eV) -41.71345 -40.39672 -39.06841 -36.88378 -35.33658 -34.31358 -33.85734 -33.21407 -30.97430 -30.33360 -29.72915 -28.52572 -26.38455 -25.71225 -24.77742 -23.18072 -22.82788 -22.41524 -21.58387 -21.14623 -19.82779 -18.62189 -17.45390 -17.33458 -17.14441 -16.85296 -16.67278 -16.16616 -15.87480 -15.76534 -15.37000 -15.21153 -14.91909 -14.67643 -14.50881 -14.27315 -14.12812 -13.97553 -13.87698 -13.69654 -13.38799 -13.15054 -12.94970 -12.89850 -12.79690 -12.71038 -12.57159 -12.24602 -12.14868 -12.08722 -11.94001 -11.76452 -11.71644 -11.66524 -11.61136 -11.55527 -11.39927 -10.77800 -10.36960 -9.64012 -9.51343 -9.45221 -8.92432 -7.85208 -5.22538 0.45891 0.54640 1.44437 1.47290 1.55673 1.72362 2.03239 2.49582 2.88885 3.33287 3.38254 3.65782 3.74471 3.85414 3.95443 4.00494 4.04862 4.10647 4.15274 4.25460 4.27783 4.30753 4.36014 4.41062 4.51477 4.56126 4.59151 4.59624 4.61586 4.70619 4.71733 4.80159 4.83596 4.93491 5.03111 5.04626 5.09550 5.11792 5.17269 5.22479 5.25244 5.29592 5.38868 5.44633 5.47701 5.57509 5.60355 5.63179 5.69982 5.72117 5.76392 6.16653 6.17841 6.59270 7.03764 7.30369 7.74279 8.44711 9.26705 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002623 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.339015 B =10670.763168 C =11178.635896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.125 4.125 6 C -0.125 4.125 7 C -0.073 4.073 8 C -0.090 4.090 9 C 0.511 3.489 10 O -0.572 6.572 11 N -0.603 5.603 12 C 0.104 3.896 13 C -0.120 4.120 14 C -0.113 4.113 15 C 0.153 3.847 16 H -0.003 1.003 17 C 0.133 3.867 18 H 0.076 0.924 19 C -0.110 4.110 20 C 0.183 3.817 21 N -0.612 5.612 22 C -0.232 4.232 23 H 0.090 0.910 24 C -0.072 4.072 25 N -0.956 5.956 26 Si 0.981 3.019 27 H -0.283 1.283 28 H -0.298 1.298 29 H -0.266 1.266 30 C -0.122 4.122 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.025 0.975 50 H -0.004 1.004 51 H 0.246 0.754 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.989 6.805 10.964 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.143 4.143 6 C -0.143 4.143 7 C -0.074 4.074 8 C -0.129 4.129 9 C 0.300 3.700 10 O -0.451 6.451 11 N -0.336 5.336 12 C -0.017 4.017 13 C -0.159 4.159 14 C -0.151 4.151 15 C 0.045 3.955 16 H 0.014 0.986 17 C 0.028 3.972 18 H 0.094 0.906 19 C -0.149 4.149 20 C 0.058 3.942 21 N -0.337 5.337 22 C -0.361 4.361 23 H 0.108 0.892 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.809 3.191 27 H -0.210 1.210 28 H -0.225 1.225 29 H -0.191 1.191 30 C -0.140 4.140 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.014 0.986 51 H 0.055 0.945 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.448 6.379 11.238 26.773 hybrid contribution 1.561 -0.664 -0.803 1.877 sum -21.887 5.715 10.434 24.912 Atomic orbital electron populations 1.21701 0.93515 1.02378 1.02124 1.20584 0.97136 0.91730 1.02964 1.20117 0.99042 0.96946 0.93176 1.21263 1.00335 0.95251 0.97962 1.21377 0.99119 0.95211 0.98559 1.21206 1.00021 1.00802 0.92226 1.19492 0.98764 0.94594 0.94520 1.20757 0.92062 1.04190 0.95940 1.21183 0.90589 0.78383 0.79800 1.90717 1.59471 1.40050 1.54854 1.48225 1.11199 1.52195 1.21989 1.22148 0.95985 0.94358 0.89174 1.21884 0.94735 1.03043 0.96194 1.21430 0.96803 0.98399 0.98478 1.20911 0.86179 0.94079 0.94339 0.98562 1.21894 0.83252 0.97425 0.94658 0.90597 1.22641 0.97128 0.98802 0.96313 1.21424 0.93618 0.95990 0.83178 1.44346 1.11438 1.75476 1.02425 1.19421 0.95746 1.36454 0.84475 0.89238 1.25733 0.97820 1.01953 1.00897 1.70192 1.11096 1.51284 1.27958 0.85045 0.78070 0.76933 0.79096 1.20986 1.22509 1.19057 1.21032 1.00480 0.94414 0.98063 0.92845 0.91323 0.92285 0.91650 0.90426 0.84638 0.84260 0.85207 0.84916 0.85774 0.89657 0.86010 0.86916 0.91840 0.91819 0.92664 0.92224 0.91416 0.95710 0.98557 0.94497 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.19 16 2 C -0.09 -1.51 6.06 29.85 0.18 -1.33 16 3 C -0.09 -2.01 5.13 -19.87 -0.10 -2.11 16 4 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 5 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 6 C -0.12 -2.68 9.70 22.27 0.22 -2.47 16 7 C -0.07 -1.66 4.37 -19.87 -0.09 -1.75 16 8 C -0.09 -1.67 4.27 29.10 0.12 -1.54 16 9 C 0.51 14.90 7.69 87.66 0.67 15.58 16 10 O -0.57 -22.43 12.88 -3.04 -0.04 -22.47 16 11 N -0.60 -17.06 2.96 -790.46 -2.34 -19.40 16 12 C 0.10 1.82 6.31 85.96 0.54 2.37 16 13 C -0.12 -2.41 5.93 30.79 0.18 -2.22 16 14 C -0.11 -3.60 5.45 30.27 0.16 -3.43 16 15 C 0.15 6.43 2.60 45.49 0.12 6.55 16 16 H 0.00 -0.14 8.03 -2.39 -0.02 -0.16 16 17 C 0.13 5.09 3.29 46.12 0.15 5.24 16 18 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 19 C -0.11 -5.03 4.97 31.59 0.16 -4.88 16 20 C 0.18 10.08 5.47 86.87 0.48 10.55 16 21 N -0.61 -32.86 3.35 -670.59 -2.25 -35.11 16 22 C -0.23 -13.18 9.94 84.04 0.84 -12.35 16 23 H 0.09 4.75 7.31 -2.91 -0.02 4.73 16 24 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 25 N -0.96 -60.14 10.46 21.65 0.23 -59.92 16 26 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 30 C -0.12 -2.86 9.36 22.27 0.21 -2.65 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.21 8.09 -2.38 -0.02 1.19 16 35 H 0.08 1.21 8.09 -2.38 -0.02 1.19 16 36 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.13 1.57 7.99 -2.38 -0.02 1.55 16 40 H 0.12 1.68 7.67 -2.39 -0.02 1.66 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.12 1.16 6.22 -2.39 -0.01 1.15 16 43 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 46 H 0.05 1.88 7.70 -2.39 -0.02 1.86 16 47 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 48 H 0.07 3.28 6.26 -2.38 -0.01 3.26 16 49 H 0.02 1.49 7.18 -2.39 -0.02 1.47 16 50 H 0.00 -0.24 7.81 -2.39 -0.02 -0.26 16 51 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 52 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -78.69 402.37 3.97 -74.72 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.88 Total: 17.55 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.46 Total: -4.02 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -4.36 Total: -114.43 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.04 Total: -22.47 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -78.69 3.97 -74.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049556749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.625 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.81 seconds