Wall clock time and date at job start Wed Apr 1 2020 02:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47021 * 2 1 4 4 C 1.38266 * 120.00361 * 270.02307 * 3 2 1 5 5 C 1.38207 * 120.00268 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99851 * 359.76683 * 5 4 3 7 7 C 1.38222 * 120.00167 * 0.46649 * 6 5 4 8 8 C 1.50693 * 119.99800 * 179.78680 * 7 6 5 9 9 C 1.50704 * 109.47284 * 269.72400 * 8 7 6 10 10 O 1.21281 * 119.99573 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00252 * 180.02562 * 9 8 7 12 12 C 1.45738 * 117.75842 * 359.97438 * 11 9 8 13 13 C 1.53050 * 109.54949 * 218.88632 * 12 11 9 14 14 C 1.52939 * 108.49830 * 306.18948 * 13 12 11 15 15 C 1.52924 * 109.80084 * 65.98634 * 14 13 12 16 16 H 1.09003 * 110.50541 * 67.12378 * 15 14 13 17 17 C 1.44190 * 117.76340 * 179.97438 * 11 9 8 18 18 H 1.09000 * 109.22516 * 26.63499 * 17 11 9 19 19 C 1.54066 * 111.76145 * 266.48409 * 17 11 9 20 20 C 1.54052 * 103.74189 * 206.74457 * 19 17 11 21 21 N 1.46889 * 107.71108 * 17.12777 * 20 19 17 22 22 C 1.36930 * 125.58372 * 182.92786 * 21 20 19 23 23 H 1.07998 * 120.00035 * 173.20377 * 22 21 20 24 24 C 1.38814 * 119.99908 * 353.20842 * 22 21 20 25 25 N 1.31618 * 120.00291 * 6.29827 * 24 22 21 26 26 Si 1.86803 * 119.99985 * 186.29884 * 24 22 21 27 27 H 1.48498 * 109.47092 * 94.98236 * 26 24 22 28 28 H 1.48500 * 109.47076 * 214.98649 * 26 24 22 29 29 H 1.48509 * 109.47077 * 334.98533 * 26 24 22 30 30 C 1.38215 * 120.00062 * 90.00615 * 3 2 1 31 31 H 1.08996 * 109.47556 * 59.99591 * 1 2 3 32 32 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46913 * 299.99326 * 1 2 3 34 34 H 1.08998 * 109.46773 * 240.00551 * 2 1 3 35 35 H 1.08996 * 109.47556 * 120.00409 * 2 1 3 36 36 H 1.08003 * 119.99296 * 359.97438 * 4 3 2 37 37 H 1.07997 * 120.00265 * 179.97438 * 5 4 3 38 38 H 1.08008 * 119.99953 * 180.25616 * 6 5 4 39 39 H 1.09001 * 109.47274 * 149.72862 * 8 7 6 40 40 H 1.08999 * 109.47769 * 29.72569 * 8 7 6 41 41 H 1.09006 * 109.45634 * 98.86572 * 12 11 9 42 42 H 1.08994 * 109.44676 * 338.90263 * 12 11 9 43 43 H 1.09001 * 109.63282 * 186.48672 * 13 12 11 44 44 H 1.09005 * 109.80224 * 65.98672 * 13 12 11 45 45 H 1.09007 * 109.41404 * 305.89027 * 14 13 12 46 46 H 1.09000 * 109.36706 * 186.05907 * 14 13 12 47 47 H 1.08999 * 110.56986 * 88.17740 * 19 17 11 48 48 H 1.08997 * 110.57101 * 325.30597 * 19 17 11 49 49 H 1.09008 * 109.81119 * 257.58378 * 20 19 17 50 50 H 1.08997 * 109.81493 * 136.68551 * 20 19 17 51 51 H 0.97001 * 120.00176 * 180.02562 * 25 24 22 52 52 H 1.07994 * 120.00001 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7234 3.3757 -1.1974 6 6 2.9502 4.0287 0.0000 7 6 2.7249 3.3753 1.1970 8 6 2.9767 4.0855 2.5020 9 6 4.3999 3.8477 2.9370 10 8 5.1372 3.1688 2.2541 11 7 4.8532 4.3895 4.0847 12 6 3.9259 5.1972 4.8668 13 6 4.6650 6.4027 5.4525 14 6 5.8860 5.8965 6.2218 15 6 6.8825 5.2606 5.2516 16 1 7.3067 6.0161 4.5903 17 6 6.2225 4.1304 4.4549 18 1 6.8071 3.9376 3.5553 19 6 6.3409 2.9101 5.3878 20 6 7.6260 3.1869 6.1911 21 7 7.9443 4.6136 6.0472 22 6 9.0452 5.2407 6.5667 23 1 9.2488 6.2710 6.3148 24 6 9.8995 4.5521 7.4170 25 7 9.7230 3.2647 7.6262 26 14 11.2996 5.4527 8.2643 27 1 10.8665 5.8776 9.6197 28 1 12.4717 4.5482 8.3801 29 1 11.6738 6.6482 7.4667 30 6 2.2627 2.0723 1.1970 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5137 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.0823 1.5636 -2.1327 37 1 2.9035 3.8848 -2.1326 38 1 3.3067 5.0482 0.0000 39 1 2.2957 3.7019 3.2618 40 1 2.8105 5.1549 2.3718 41 1 3.5141 4.5952 5.6769 42 1 3.1165 5.5444 4.2247 43 1 4.0040 6.9439 6.1295 44 1 4.9873 7.0645 4.6485 45 1 5.5701 5.1542 6.9550 46 1 6.3623 6.7322 6.7344 47 1 6.4420 1.9929 4.8076 48 1 5.4791 2.8511 6.0524 49 1 8.4447 2.5843 5.7976 50 1 7.4631 2.9488 7.2422 51 1 10.3197 2.7836 8.2206 52 1 2.0825 1.5633 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049556750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:36 Heat of formation + Delta-G solvation = 6.408765 kcal Electronic energy + Delta-G solvation = -30337.294248 eV Core-core repulsion = 26494.607335 eV Total energy + Delta-G solvation = -3842.686913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.59711 -39.47584 -37.82526 -35.37232 -34.59262 -32.72752 -32.56096 -32.05100 -29.71329 -29.16225 -28.49069 -27.44135 -24.46463 -24.36928 -24.10222 -22.32664 -21.91297 -21.03970 -20.15786 -19.56209 -18.05153 -17.17285 -16.88900 -16.61424 -15.97074 -15.61325 -15.11194 -14.98889 -14.73944 -14.28789 -14.06692 -13.84415 -13.80490 -13.74751 -13.44967 -13.25994 -12.97819 -12.92402 -12.56484 -12.24350 -12.14125 -11.96588 -11.90546 -11.83814 -11.45803 -11.41557 -11.09712 -10.95799 -10.94867 -10.90002 -10.75832 -10.66430 -10.44839 -10.08456 -10.06077 -9.65192 -9.55005 -9.52713 -8.83454 -8.65917 -8.58598 -8.27168 -6.85178 -5.72333 -3.06133 1.26566 1.34487 2.79515 3.19153 3.39853 3.45170 3.47288 3.72053 4.47555 4.50056 4.56076 4.68032 4.73591 4.90645 4.97364 5.01660 5.08232 5.12646 5.16723 5.27450 5.28976 5.32758 5.42710 5.42901 5.46451 5.50152 5.57632 5.64393 5.67869 5.68203 5.72239 5.89979 5.91411 5.99012 6.01553 6.03359 6.10372 6.24996 6.31297 6.38514 6.39702 6.49282 6.54571 6.59712 6.60313 6.77143 6.94236 7.01177 7.11827 7.55849 7.60406 7.66651 7.83432 8.25095 8.40880 9.20882 9.80939 10.46732 11.39075 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.002384 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.662409 B =11740.021632 C =12186.111170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.102 4.102 9 C 0.505 3.495 10 O -0.530 6.530 11 N -0.589 5.589 12 C 0.108 3.892 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.162 3.838 16 H 0.053 0.947 17 C 0.137 3.863 18 H 0.090 0.910 19 C -0.150 4.150 20 C 0.179 3.821 21 N -0.596 5.596 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.006 4.006 25 N -0.918 5.918 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.102 4.102 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.044 0.956 51 H 0.252 0.748 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.256 0.225 -12.976 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.292 3.708 10 O -0.406 6.406 11 N -0.321 5.321 12 C -0.015 4.015 13 C -0.171 4.171 14 C -0.171 4.171 15 C 0.053 3.947 16 H 0.071 0.929 17 C 0.033 3.967 18 H 0.108 0.892 19 C -0.189 4.189 20 C 0.054 3.946 21 N -0.320 5.320 22 C -0.356 4.356 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 C -0.120 4.120 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.613 -0.208 -13.159 24.456 hybrid contribution 0.816 0.490 0.690 1.176 sum -19.797 0.282 -12.469 23.398 Atomic orbital electron populations 1.21742 0.94812 1.01592 1.02118 1.20539 0.96034 0.92793 1.02944 1.19818 0.99247 0.96051 0.93097 1.20968 1.00593 0.95018 0.97332 1.21047 0.99633 0.94983 0.97803 1.20953 0.99822 1.00025 0.92007 1.19290 0.98541 0.94368 0.93698 1.20757 0.95226 1.02158 0.96080 1.20558 0.89337 0.80067 0.80815 1.90721 1.57983 1.38332 1.53607 1.47096 1.12251 1.50384 1.22351 1.21527 0.91697 0.92735 0.95557 1.21842 0.98382 0.96598 1.00251 1.22118 0.95000 1.00873 0.99071 1.20884 0.89149 0.92757 0.91915 0.92892 1.21055 0.80526 0.96129 0.99019 0.89156 1.22978 1.00445 0.97261 0.98251 1.21053 0.91113 0.85239 0.97187 1.44499 1.22072 1.04552 1.60882 1.19011 0.99602 0.95648 1.21370 0.90428 1.24830 0.99504 0.95977 0.99905 1.69988 1.39690 1.06544 1.40277 0.86123 0.81500 0.78562 0.79728 1.21640 1.21774 1.20624 1.20825 0.99652 0.93922 0.97586 0.92655 0.92491 0.92560 0.91104 0.90972 0.86434 0.86209 0.86356 0.88134 0.88037 0.91890 0.90368 0.91152 0.91719 0.91982 0.91842 0.92037 0.92661 0.93563 0.93746 0.93725 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.09 -0.73 6.06 -27.89 -0.17 -0.90 16 3 C -0.08 -0.88 5.13 -104.62 -0.54 -1.41 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 7 C -0.06 -0.69 4.37 -104.63 -0.46 -1.15 16 8 C -0.10 -1.08 4.16 -29.04 -0.12 -1.20 16 9 C 0.51 7.63 7.58 -10.98 -0.08 7.55 16 10 O -0.53 -10.29 15.30 5.56 0.09 -10.21 16 11 N -0.59 -8.87 2.80 -167.58 -0.47 -9.34 16 12 C 0.11 1.23 6.06 -4.43 -0.03 1.21 16 13 C -0.13 -1.64 6.10 -26.74 -0.16 -1.80 16 14 C -0.13 -2.25 5.31 -26.80 -0.14 -2.39 16 15 C 0.16 3.29 3.29 -67.24 -0.22 3.07 16 16 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 17 C 0.14 2.60 2.73 -68.49 -0.19 2.42 16 18 H 0.09 1.94 7.08 -51.93 -0.37 1.57 16 19 C -0.15 -3.02 6.45 -25.63 -0.17 -3.19 16 20 C 0.18 4.43 5.39 -3.28 -0.02 4.41 16 21 N -0.60 -15.01 2.93 -163.78 -0.48 -15.49 16 22 C -0.23 -6.28 10.26 -15.06 -0.15 -6.43 16 23 H 0.08 2.07 7.84 -52.49 -0.41 1.65 16 24 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 25 N -0.92 -27.02 10.34 55.49 0.57 -26.45 16 26 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 C -0.10 -1.18 9.36 -39.58 -0.37 -1.55 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.10 0.85 7.97 -51.93 -0.41 0.44 16 40 H 0.10 0.83 7.26 -51.93 -0.38 0.46 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.64 5.81 -51.93 -0.30 0.34 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.05 1.28 7.48 -51.92 -0.39 0.89 16 50 H 0.04 1.20 7.41 -51.93 -0.38 0.82 16 51 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 52 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 406.34 15.07 6.12 6.12 Total: -1.00 -32.76 406.34 -11.86 -44.62 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.96 Total: 0.87 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.71 Total: -7.17 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.38 Total: -51.28 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.76 -11.86 -44.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049556750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.026 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds