Wall clock time and date at job start Wed Apr 1 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47021 * 2 1 4 4 C 1.38266 * 120.00361 * 270.02307 * 3 2 1 5 5 C 1.38207 * 120.00268 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99851 * 359.76683 * 5 4 3 7 7 C 1.38222 * 120.00167 * 0.46649 * 6 5 4 8 8 C 1.50693 * 119.99800 * 179.78680 * 7 6 5 9 9 C 1.50704 * 109.47284 * 269.72400 * 8 7 6 10 10 O 1.21281 * 119.99573 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00252 * 180.02562 * 9 8 7 12 12 C 1.45738 * 117.75842 * 359.97438 * 11 9 8 13 13 C 1.53050 * 109.54949 * 218.88632 * 12 11 9 14 14 C 1.52939 * 108.49830 * 306.18948 * 13 12 11 15 15 C 1.52924 * 109.80084 * 65.98634 * 14 13 12 16 16 H 1.09003 * 110.50541 * 67.12378 * 15 14 13 17 17 C 1.44190 * 117.76340 * 179.97438 * 11 9 8 18 18 H 1.09000 * 109.22516 * 26.63499 * 17 11 9 19 19 C 1.54066 * 111.76145 * 266.48409 * 17 11 9 20 20 C 1.54052 * 103.74189 * 206.74457 * 19 17 11 21 21 N 1.46889 * 107.71108 * 17.12777 * 20 19 17 22 22 C 1.36930 * 125.58372 * 182.92786 * 21 20 19 23 23 H 1.07998 * 120.00035 * 173.20377 * 22 21 20 24 24 C 1.38814 * 119.99908 * 353.20842 * 22 21 20 25 25 N 1.31618 * 120.00291 * 6.29827 * 24 22 21 26 26 Si 1.86803 * 119.99985 * 186.29884 * 24 22 21 27 27 H 1.48498 * 109.47092 * 94.98236 * 26 24 22 28 28 H 1.48500 * 109.47076 * 214.98649 * 26 24 22 29 29 H 1.48509 * 109.47077 * 334.98533 * 26 24 22 30 30 C 1.38215 * 120.00062 * 90.00615 * 3 2 1 31 31 H 1.08996 * 109.47556 * 59.99591 * 1 2 3 32 32 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46913 * 299.99326 * 1 2 3 34 34 H 1.08998 * 109.46773 * 240.00551 * 2 1 3 35 35 H 1.08996 * 109.47556 * 120.00409 * 2 1 3 36 36 H 1.08003 * 119.99296 * 359.97438 * 4 3 2 37 37 H 1.07997 * 120.00265 * 179.97438 * 5 4 3 38 38 H 1.08008 * 119.99953 * 180.25616 * 6 5 4 39 39 H 1.09001 * 109.47274 * 149.72862 * 8 7 6 40 40 H 1.08999 * 109.47769 * 29.72569 * 8 7 6 41 41 H 1.09006 * 109.45634 * 98.86572 * 12 11 9 42 42 H 1.08994 * 109.44676 * 338.90263 * 12 11 9 43 43 H 1.09001 * 109.63282 * 186.48672 * 13 12 11 44 44 H 1.09005 * 109.80224 * 65.98672 * 13 12 11 45 45 H 1.09007 * 109.41404 * 305.89027 * 14 13 12 46 46 H 1.09000 * 109.36706 * 186.05907 * 14 13 12 47 47 H 1.08999 * 110.56986 * 88.17740 * 19 17 11 48 48 H 1.08997 * 110.57101 * 325.30597 * 19 17 11 49 49 H 1.09008 * 109.81119 * 257.58378 * 20 19 17 50 50 H 1.08997 * 109.81493 * 136.68551 * 20 19 17 51 51 H 0.97001 * 120.00176 * 180.02562 * 25 24 22 52 52 H 1.07994 * 120.00001 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7234 3.3757 -1.1974 6 6 2.9502 4.0287 0.0000 7 6 2.7249 3.3753 1.1970 8 6 2.9767 4.0855 2.5020 9 6 4.3999 3.8477 2.9370 10 8 5.1372 3.1688 2.2541 11 7 4.8532 4.3895 4.0847 12 6 3.9259 5.1972 4.8668 13 6 4.6650 6.4027 5.4525 14 6 5.8860 5.8965 6.2218 15 6 6.8825 5.2606 5.2516 16 1 7.3067 6.0161 4.5903 17 6 6.2225 4.1304 4.4549 18 1 6.8071 3.9376 3.5553 19 6 6.3409 2.9101 5.3878 20 6 7.6260 3.1869 6.1911 21 7 7.9443 4.6136 6.0472 22 6 9.0452 5.2407 6.5667 23 1 9.2488 6.2710 6.3148 24 6 9.8995 4.5521 7.4170 25 7 9.7230 3.2647 7.6262 26 14 11.2996 5.4527 8.2643 27 1 10.8665 5.8776 9.6197 28 1 12.4717 4.5482 8.3801 29 1 11.6738 6.6482 7.4667 30 6 2.2627 2.0723 1.1970 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5137 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.0823 1.5636 -2.1327 37 1 2.9035 3.8848 -2.1326 38 1 3.3067 5.0482 0.0000 39 1 2.2957 3.7019 3.2618 40 1 2.8105 5.1549 2.3718 41 1 3.5141 4.5952 5.6769 42 1 3.1165 5.5444 4.2247 43 1 4.0040 6.9439 6.1295 44 1 4.9873 7.0645 4.6485 45 1 5.5701 5.1542 6.9550 46 1 6.3623 6.7322 6.7344 47 1 6.4420 1.9929 4.8076 48 1 5.4791 2.8511 6.0524 49 1 8.4447 2.5843 5.7976 50 1 7.4631 2.9488 7.2422 51 1 10.3197 2.7836 8.2206 52 1 2.0825 1.5633 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049556750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:35 Heat of formation + Delta-G solvation = -10.443893 kcal Electronic energy + Delta-G solvation = -30338.025034 eV Core-core repulsion = 26494.607335 eV Total energy + Delta-G solvation = -3843.417699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.83619 -40.40430 -39.22647 -36.85680 -35.33777 -34.31203 -33.88073 -33.24495 -31.03324 -30.36289 -29.97501 -28.49191 -26.34697 -25.73147 -24.77042 -23.41395 -23.01797 -22.19102 -21.81206 -20.70053 -19.43034 -18.76879 -18.35062 -17.42239 -16.88633 -16.82690 -16.77203 -16.12644 -16.01206 -15.85152 -15.16368 -15.08489 -14.95995 -14.65473 -14.50904 -14.31305 -14.10728 -13.99316 -13.81597 -13.75552 -13.50100 -13.15211 -12.96107 -12.85395 -12.81227 -12.65551 -12.56520 -12.34278 -12.31472 -12.10250 -12.04318 -11.89976 -11.66855 -11.61536 -11.60217 -11.52081 -11.18441 -10.78977 -10.71197 -9.64260 -9.58312 -9.45471 -8.92031 -7.87126 -5.23134 0.45823 0.55044 1.44422 1.46361 1.55318 1.65602 2.02361 2.48616 2.89284 3.30169 3.53245 3.63640 3.74409 3.83914 3.88052 3.99571 4.02853 4.05050 4.14010 4.18889 4.26278 4.31120 4.34394 4.41448 4.51971 4.58068 4.59059 4.61594 4.64457 4.68487 4.72487 4.80677 4.84909 4.86786 4.96222 5.05120 5.08137 5.10835 5.21201 5.23464 5.26172 5.37456 5.40240 5.41539 5.53770 5.60945 5.62963 5.69796 5.70707 5.72360 5.76699 6.17091 6.17897 6.45746 7.06749 7.24001 7.73894 8.39026 9.23594 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.002384 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.662409 B =11740.021632 C =12186.111170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.075 4.075 8 C -0.091 4.091 9 C 0.503 3.497 10 O -0.582 6.582 11 N -0.588 5.588 12 C 0.101 3.899 13 C -0.122 4.122 14 C -0.121 4.121 15 C 0.156 3.844 16 H 0.046 0.954 17 C 0.156 3.844 18 H 0.058 0.942 19 C -0.134 4.134 20 C 0.192 3.808 21 N -0.616 5.616 22 C -0.237 4.237 23 H 0.083 0.917 24 C -0.066 4.066 25 N -0.951 5.951 26 Si 0.979 3.021 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.267 1.267 30 C -0.120 4.120 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.003 0.997 50 H 0.014 0.986 51 H 0.247 0.753 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.289 2.091 -13.637 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.076 4.076 8 C -0.130 4.130 9 C 0.293 3.707 10 O -0.461 6.461 11 N -0.319 5.319 12 C -0.020 4.020 13 C -0.160 4.160 14 C -0.161 4.161 15 C 0.049 3.951 16 H 0.064 0.936 17 C 0.050 3.950 18 H 0.076 0.924 19 C -0.173 4.173 20 C 0.067 3.933 21 N -0.341 5.341 22 C -0.365 4.365 23 H 0.101 0.899 24 C -0.259 4.259 25 N -0.600 5.600 26 Si 0.807 3.193 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.192 1.192 30 C -0.138 4.138 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.144 0.856 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.021 0.979 50 H 0.032 0.968 51 H 0.056 0.944 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.710 1.710 -13.831 27.502 hybrid contribution 1.771 -0.107 0.809 1.950 sum -21.939 1.603 -13.022 25.563 Atomic orbital electron populations 1.21705 0.93592 1.02378 1.02106 1.20580 0.97063 0.91647 1.03059 1.20130 0.98988 0.97012 0.93135 1.21269 1.00289 0.95217 0.98051 1.21370 0.99205 0.95270 0.98529 1.21225 1.00094 1.00794 0.92327 1.19516 0.98894 0.94692 0.94475 1.20813 0.91826 1.04250 0.96132 1.21424 0.90843 0.78656 0.79812 1.90707 1.59768 1.40567 1.55067 1.47148 1.10814 1.50968 1.23012 1.21924 0.91643 0.91910 0.96534 1.21814 0.96477 0.97275 1.00434 1.21908 0.96280 0.99710 0.98187 1.21099 0.88899 0.92916 0.92146 0.93569 1.20504 0.83029 0.94662 0.96829 0.92403 1.22766 0.98590 0.97823 0.98129 1.20705 0.91861 0.84968 0.95799 1.44763 1.22991 1.05013 1.61353 1.19390 1.00287 0.95919 1.20946 0.89877 1.25691 1.02422 0.96747 1.01046 1.70211 1.40737 1.08019 1.41050 0.85055 0.78078 0.77537 0.78641 1.21152 1.22414 1.19159 1.21047 1.00298 0.94298 0.98177 0.92418 0.91310 0.92791 0.90465 0.91392 0.84662 0.84374 0.85302 0.85224 0.84715 0.90641 0.85634 0.87660 0.91063 0.93435 0.93150 0.92446 0.90679 0.97907 0.96776 0.94418 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.09 -1.36 6.06 29.85 0.18 -1.18 16 3 C -0.09 -1.87 5.13 -19.86 -0.10 -1.98 16 4 C -0.13 -2.50 9.70 22.27 0.22 -2.28 16 5 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 6 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 7 C -0.08 -1.63 4.37 -19.87 -0.09 -1.72 16 8 C -0.09 -1.58 4.16 29.10 0.12 -1.46 16 9 C 0.50 14.19 7.58 87.66 0.66 14.85 16 10 O -0.58 -22.59 15.30 -3.03 -0.05 -22.64 16 11 N -0.59 -16.41 2.80 -802.48 -2.25 -18.66 16 12 C 0.10 1.83 6.06 86.54 0.52 2.36 16 13 C -0.12 -2.52 6.10 30.59 0.19 -2.33 16 14 C -0.12 -4.01 5.31 30.55 0.16 -3.85 16 15 C 0.16 6.42 3.29 44.83 0.15 6.57 16 16 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 17 C 0.16 5.96 2.73 45.86 0.13 6.08 16 18 H 0.06 2.59 7.08 -2.39 -0.02 2.57 16 19 C -0.13 -5.53 6.45 31.31 0.20 -5.33 16 20 C 0.19 10.08 5.39 86.66 0.47 10.54 16 21 N -0.62 -32.27 2.93 -672.09 -1.97 -34.24 16 22 C -0.24 -13.40 10.26 84.04 0.86 -12.54 16 23 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 24 C -0.07 -3.83 5.48 84.86 0.47 -3.37 16 25 N -0.95 -58.73 10.34 21.65 0.22 -58.51 16 26 Si 0.98 46.44 29.56 68.60 2.03 48.47 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 30 C -0.12 -2.63 9.36 22.27 0.21 -2.42 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 36 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.13 1.54 7.97 -2.39 -0.02 1.52 16 40 H 0.14 1.46 7.26 -2.39 -0.02 1.44 16 41 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.13 1.20 5.81 -2.39 -0.01 1.19 16 43 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.05 1.71 8.02 -2.38 -0.02 1.69 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 47 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.07 2.79 8.14 -2.39 -0.02 2.78 16 49 H 0.00 0.16 7.48 -2.38 -0.02 0.14 16 50 H 0.01 0.81 7.41 -2.39 -0.02 0.79 16 51 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 52 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -77.24 406.34 4.36 -72.87 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.88 Total: 16.41 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.50 Total: -3.71 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -3.99 Total: -111.40 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.24 4.36 -72.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049556750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.431 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds