Wall clock time and date at job start Wed Apr 1 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46957 * 2 1 4 4 C 1.38254 * 120.00322 * 269.97931 * 3 2 1 5 5 C 1.38210 * 120.00131 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00049 * 359.78792 * 5 4 3 7 7 C 1.38219 * 119.99509 * 0.48855 * 6 5 4 8 8 C 1.50698 * 119.99723 * 179.76187 * 7 6 5 9 9 C 1.50694 * 109.47543 * 269.72876 * 8 7 6 10 10 O 1.21288 * 119.99755 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00555 * 179.97438 * 9 8 7 12 12 C 1.46806 * 119.57362 * 359.97438 * 11 9 8 13 13 C 1.53464 * 107.59121 * 127.66367 * 12 11 9 14 14 C 1.52732 * 108.43975 * 58.08236 * 13 12 11 15 15 C 1.53011 * 110.80286 * 296.22728 * 14 13 12 16 16 H 1.09003 * 111.38339 * 290.27379 * 15 14 13 17 17 C 1.45111 * 119.58010 * 179.72562 * 11 9 8 18 18 H 1.08998 * 109.97317 * 348.34806 * 17 11 9 19 19 C 1.54422 * 111.60821 * 111.63372 * 17 11 9 20 20 C 1.54566 * 102.44792 * 156.58134 * 19 17 11 21 21 N 1.47126 * 107.25312 * 338.32705 * 20 19 17 22 22 C 1.36945 * 125.76694 * 177.39046 * 21 20 19 23 23 H 1.07998 * 119.99642 * 180.02562 * 22 21 20 24 24 C 1.38810 * 119.99836 * 0.02562 * 22 21 20 25 25 N 1.31615 * 120.00361 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99780 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46878 * 89.99957 * 26 24 22 28 28 H 1.48495 * 109.47012 * 210.00349 * 26 24 22 29 29 H 1.48502 * 109.47158 * 330.00533 * 26 24 22 30 30 C 1.38217 * 119.99419 * 90.00204 * 3 2 1 31 31 H 1.09001 * 109.47257 * 59.99820 * 1 2 3 32 32 H 1.09004 * 109.46517 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46968 * 299.99664 * 1 2 3 34 34 H 1.08998 * 109.47444 * 240.00225 * 2 1 3 35 35 H 1.09001 * 109.47257 * 120.00180 * 2 1 3 36 36 H 1.08004 * 119.99536 * 359.97438 * 4 3 2 37 37 H 1.08000 * 119.99881 * 180.02562 * 5 4 3 38 38 H 1.07996 * 120.00136 * 180.24857 * 6 5 4 39 39 H 1.08996 * 109.47205 * 149.72428 * 8 7 6 40 40 H 1.09006 * 109.47060 * 29.72774 * 8 7 6 41 41 H 1.08997 * 109.83184 * 247.18485 * 12 11 9 42 42 H 1.09007 * 109.83298 * 8.07654 * 12 11 9 43 43 H 1.09004 * 109.63630 * 177.76688 * 13 12 11 44 44 H 1.08998 * 109.64438 * 298.18209 * 13 12 11 45 45 H 1.08995 * 109.21092 * 56.57502 * 14 13 12 46 46 H 1.09001 * 109.20700 * 175.88671 * 14 13 12 47 47 H 1.08996 * 110.81030 * 274.81841 * 19 17 11 48 48 H 1.09000 * 110.80876 * 38.34418 * 19 17 11 49 49 H 1.08998 * 109.88637 * 97.73825 * 20 19 17 50 50 H 1.09004 * 109.88493 * 218.75498 * 20 19 17 51 51 H 0.96994 * 120.00395 * 180.02562 * 25 24 22 52 52 H 1.07997 * 120.00317 * 359.97353 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2631 2.0725 -1.1973 5 6 2.7233 3.3758 -1.1972 6 6 2.9486 4.0293 0.0001 7 6 2.7233 3.3759 1.1971 8 6 2.9740 4.0864 2.5022 9 6 4.3971 3.8498 2.9377 10 8 5.1350 3.1706 2.2557 11 7 4.8499 4.3929 4.0851 12 6 3.9488 5.2139 4.9032 13 6 3.9858 4.6587 6.3335 14 6 5.4291 4.7021 6.8313 15 6 6.3209 3.7840 5.9928 16 1 6.0916 2.7338 6.1735 17 6 6.2201 4.1542 4.4988 18 1 6.6613 3.3660 3.8888 19 6 7.0691 5.4420 4.4247 20 6 8.2091 5.1477 5.4261 21 7 7.7261 4.1027 6.3422 22 6 8.4519 3.5221 7.3480 23 1 8.0027 2.7597 7.9672 24 6 9.7648 3.9134 7.5714 25 7 10.3120 4.8428 6.8171 26 14 10.7550 3.1209 8.9429 27 1 11.4624 1.9263 8.4160 28 1 11.7479 4.0949 9.4630 29 1 9.8417 2.7114 10.0400 30 6 2.2627 2.0723 1.1971 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0839 1.5631 -2.1326 37 1 2.9032 3.8850 -2.1325 38 1 3.3043 5.0490 0.0002 39 1 2.2929 3.7023 3.2616 40 1 2.8069 5.1556 2.3717 41 1 4.2873 6.2500 4.8998 42 1 2.9344 5.1550 4.5087 43 1 3.3566 5.2703 6.9802 44 1 3.6245 3.6304 6.3368 45 1 5.8015 5.7241 6.7630 46 1 5.4594 4.3789 7.8718 47 1 7.4646 5.5877 3.4195 48 1 6.4881 6.3077 4.7428 49 1 9.0902 4.7935 4.8912 50 1 8.4534 6.0507 5.9856 51 1 11.2295 5.1160 6.9730 52 1 2.0823 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049556751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:50 Heat of formation + Delta-G solvation = 7.637748 kcal Electronic energy + Delta-G solvation = -30338.236406 eV Core-core repulsion = 26495.602786 eV Total energy + Delta-G solvation = -3842.633620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.50466 -39.46905 -37.86408 -35.24795 -34.58485 -32.68736 -32.37455 -32.02897 -29.70256 -29.12787 -28.41584 -27.43499 -24.53794 -24.26588 -24.10202 -22.30518 -21.96802 -20.99160 -20.07448 -19.59856 -18.07126 -17.15175 -16.87033 -16.61922 -15.95174 -15.60064 -15.07069 -14.89771 -14.75336 -14.31290 -13.99051 -13.95997 -13.76560 -13.69546 -13.43467 -13.23307 -12.98343 -12.87400 -12.54112 -12.19271 -12.15952 -12.04046 -11.88685 -11.81276 -11.44276 -11.35592 -11.06985 -10.98784 -10.94640 -10.89762 -10.77512 -10.64387 -10.47126 -10.08078 -10.06044 -9.64356 -9.60245 -9.52448 -8.83206 -8.65749 -8.61664 -8.24386 -6.85301 -5.70455 -3.04592 1.26781 1.34635 2.80641 3.18396 3.40828 3.45720 3.47393 3.72198 4.48289 4.50572 4.56341 4.69894 4.72403 4.93869 4.97982 5.01591 5.09913 5.13919 5.15911 5.27937 5.29330 5.32654 5.39799 5.42837 5.49549 5.50370 5.59275 5.64625 5.67050 5.67817 5.72804 5.88158 5.90068 5.99415 6.00470 6.03506 6.11153 6.22748 6.31255 6.36901 6.39191 6.49413 6.52051 6.54742 6.60894 6.75305 6.94269 7.00608 7.07495 7.55721 7.60801 7.66389 7.83351 8.24072 8.41110 9.21189 9.80892 10.46953 11.40783 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002408 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.646826 B =11627.520200 C =11797.227356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.102 4.102 9 C 0.510 3.490 10 O -0.533 6.533 11 N -0.595 5.595 12 C 0.105 3.895 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.156 3.844 16 H 0.059 0.941 17 C 0.132 3.868 18 H 0.100 0.900 19 C -0.151 4.151 20 C 0.181 3.819 21 N -0.598 5.598 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C -0.102 4.102 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.041 0.959 51 H 0.252 0.748 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.891 -0.998 -12.027 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.327 5.327 12 C -0.017 4.017 13 C -0.172 4.172 14 C -0.170 4.170 15 C 0.047 3.953 16 H 0.077 0.923 17 C 0.028 3.972 18 H 0.118 0.882 19 C -0.190 4.190 20 C 0.056 3.944 21 N -0.323 5.323 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.120 4.120 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.219 -1.336 -12.276 24.550 hybrid contribution 0.697 -0.172 0.865 1.124 sum -20.522 -1.507 -11.410 23.530 Atomic orbital electron populations 1.21743 0.94813 1.01586 1.02120 1.20542 0.96033 0.92795 1.02936 1.19816 0.99260 0.96056 0.93102 1.20965 1.00596 0.95020 0.97331 1.21050 0.99632 0.94974 0.97808 1.20953 0.99794 1.00032 0.92005 1.19288 0.98540 0.94353 0.93698 1.20732 0.95239 1.02231 0.95993 1.20484 0.89215 0.79695 0.80855 1.90723 1.58148 1.38703 1.53371 1.47652 1.12697 1.50360 1.21974 1.21856 0.93228 0.95013 0.91646 1.21926 0.98902 1.01166 0.95203 1.22111 0.92750 1.01687 1.00423 1.21376 0.86803 0.96519 0.90609 0.92333 1.21752 0.79792 0.98778 0.96924 0.88154 1.23101 0.98841 0.96558 1.00532 1.21163 0.92072 0.92167 0.89031 1.44731 1.07329 1.43804 1.36418 1.19030 0.93526 1.16236 1.06635 0.90469 1.24797 0.97018 0.99084 0.99491 1.69953 1.13786 1.32552 1.40563 0.86125 0.79961 0.78336 0.81367 1.21607 1.21719 1.20740 1.20826 0.99679 0.93919 0.97583 0.92659 0.92496 0.92553 0.91108 0.90981 0.86433 0.86205 0.86349 0.88110 0.88132 0.91227 0.90140 0.91359 0.91850 0.91848 0.92188 0.92120 0.92309 0.93100 0.94082 0.93744 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.09 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 4 C -0.12 -1.25 9.70 -39.59 -0.38 -1.63 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 7 C -0.06 -0.69 4.37 -104.62 -0.46 -1.15 16 8 C -0.10 -1.08 4.14 -29.04 -0.12 -1.20 16 9 C 0.51 7.73 7.65 -10.99 -0.08 7.65 16 10 O -0.53 -10.43 15.36 5.55 0.09 -10.34 16 11 N -0.59 -8.91 2.73 -164.99 -0.45 -9.36 16 12 C 0.11 1.20 6.05 -3.63 -0.02 1.18 16 13 C -0.13 -1.65 6.11 -26.63 -0.16 -1.81 16 14 C -0.13 -2.22 5.10 -26.86 -0.14 -2.36 16 15 C 0.16 3.16 3.60 -66.30 -0.24 2.92 16 16 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 17 C 0.13 2.49 3.10 -67.28 -0.21 2.28 16 18 H 0.10 2.19 6.96 -51.93 -0.36 1.83 16 19 C -0.15 -2.93 6.08 -25.16 -0.15 -3.08 16 20 C 0.18 4.40 5.19 -2.88 -0.01 4.38 16 21 N -0.60 -15.01 2.91 -162.12 -0.47 -15.48 16 22 C -0.23 -6.23 10.29 -15.06 -0.15 -6.39 16 23 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -27.08 10.33 55.49 0.57 -26.51 16 26 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 C -0.10 -1.19 9.36 -39.58 -0.37 -1.56 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.10 0.85 7.56 -51.93 -0.39 0.46 16 40 H 0.10 0.84 7.87 -51.93 -0.41 0.43 16 41 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 42 H 0.08 0.65 5.81 -51.93 -0.30 0.35 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.16 7.12 -51.93 -0.37 0.79 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.06 1.04 6.80 -51.93 -0.35 0.69 16 49 H 0.05 1.39 7.30 -51.93 -0.38 1.02 16 50 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 51 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 52 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -32.80 403.50 -11.74 -44.54 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.81 Total: 1.23 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.72 Total: -7.32 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.35 Total: -51.36 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.80 -11.74 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049556751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.178 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds