Wall clock time and date at job start Wed Apr 1 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.46946 * 2 1 4 4 C 1.38253 * 120.00306 * 269.97908 * 3 2 1 5 5 C 1.38210 * 120.00107 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.00015 * 359.78720 * 5 4 3 7 7 C 1.38217 * 119.99694 * 0.48575 * 6 5 4 8 8 C 1.50705 * 119.99675 * 179.76655 * 7 6 5 9 9 C 1.50698 * 109.46907 * 269.72844 * 8 7 6 10 10 O 1.21281 * 120.00248 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99999 * 180.02562 * 9 8 7 12 12 C 1.47852 * 122.22660 * 0.02562 * 11 9 8 13 13 C 1.52721 * 111.06693 * 127.54041 * 12 11 9 14 14 C 1.53869 * 111.52415 * 48.52075 * 13 12 11 15 15 C 1.51085 * 107.33882 * 303.08143 * 14 13 12 16 16 H 1.08998 * 108.73398 * 308.53325 * 15 14 13 17 17 C 1.45720 * 122.23113 * 180.02562 * 11 9 8 18 18 H 1.08999 * 110.65305 * 119.69096 * 17 11 9 19 19 C 1.53437 * 116.83292 * 350.30200 * 17 11 9 20 20 C 1.55467 * 101.67179 * 207.09234 * 19 17 11 21 21 N 1.45030 * 119.18525 * 183.27219 * 15 14 13 22 22 C 1.36935 * 126.56226 * 29.39214 * 21 15 14 23 23 H 1.07995 * 120.00048 * 352.88307 * 22 21 15 24 24 C 1.38812 * 119.99855 * 172.89031 * 22 21 15 25 25 N 1.31621 * 119.99716 * 5.69405 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 185.68836 * 24 22 21 27 27 H 1.48498 * 109.46614 * 94.98923 * 26 24 22 28 28 H 1.48498 * 109.47323 * 214.98828 * 26 24 22 29 29 H 1.48502 * 109.47139 * 334.99269 * 26 24 22 30 30 C 1.38218 * 119.99730 * 90.00326 * 3 2 1 31 31 H 1.09000 * 109.47058 * 300.00033 * 1 2 3 32 32 H 1.08998 * 109.47135 * 59.99321 * 1 2 3 33 33 H 1.08995 * 109.47388 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47158 * 240.00748 * 2 1 3 35 35 H 1.08998 * 109.47115 * 119.99891 * 2 1 3 36 36 H 1.08001 * 120.00037 * 0.02562 * 4 3 2 37 37 H 1.08006 * 119.99945 * 180.02562 * 5 4 3 38 38 H 1.07995 * 119.99859 * 180.25942 * 6 5 4 39 39 H 1.08996 * 109.46594 * 149.72809 * 8 7 6 40 40 H 1.08995 * 109.46651 * 29.72854 * 8 7 6 41 41 H 1.09001 * 109.16034 * 7.13325 * 12 11 9 42 42 H 1.08997 * 109.11778 * 247.91710 * 12 11 9 43 43 H 1.09001 * 109.06464 * 288.00064 * 13 12 11 44 44 H 1.08990 * 109.01323 * 169.01774 * 13 12 11 45 45 H 1.08997 * 109.88344 * 183.62212 * 14 13 12 46 46 H 1.09005 * 109.87901 * 62.53427 * 14 13 12 47 47 H 1.08998 * 110.98624 * 325.19655 * 19 17 11 48 48 H 1.08999 * 110.98329 * 88.96428 * 19 17 11 49 49 H 1.09013 * 109.95656 * 141.98104 * 20 19 17 50 50 H 1.08996 * 109.96290 * 263.18229 * 20 19 17 51 51 H 0.97013 * 119.99651 * 180.02562 * 25 24 22 52 52 H 1.08002 * 119.99742 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2631 2.0726 -1.1973 5 6 2.7233 3.3758 -1.1972 6 6 2.9486 4.0294 0.0001 7 6 2.7232 3.3760 1.1971 8 6 2.9738 4.0866 2.5022 9 6 4.3969 3.8500 2.9378 10 8 5.1352 3.1716 2.2554 11 7 4.8494 4.3923 4.0857 12 6 3.9924 5.2264 4.9551 13 6 4.0103 4.7172 6.3948 14 6 5.4466 4.4699 6.8883 15 6 6.0888 3.4916 5.9328 16 1 5.4325 2.6285 5.8218 17 6 6.2157 4.1956 4.5526 18 1 6.7334 5.1509 4.6397 19 6 7.0608 3.1570 3.8035 20 6 8.0609 2.7104 4.9068 21 7 7.4344 3.0213 6.2004 22 6 8.0205 2.8827 7.4302 23 1 7.5136 3.2418 8.3136 24 6 9.2664 2.2808 7.5414 25 7 9.9339 1.9448 6.4579 26 14 9.9956 1.9477 9.2286 27 1 9.6797 0.5557 9.6382 28 1 11.4689 2.1256 9.1750 29 1 9.4178 2.8968 10.2138 30 6 2.2627 2.0724 1.1970 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 2.0831 1.5635 -2.1326 37 1 2.9032 3.8850 -2.1326 38 1 3.3042 5.0491 0.0001 39 1 2.2927 3.7024 3.2616 40 1 2.8067 5.1557 2.3716 41 1 2.9695 5.2012 4.5794 42 1 4.3557 6.2538 4.9346 43 1 3.4494 3.7842 6.4495 44 1 3.5347 5.4567 7.0389 45 1 5.4258 4.0475 7.8929 46 1 6.0042 5.4065 6.8904 47 1 6.4465 2.3201 3.4713 48 1 7.5841 3.6125 2.9627 49 1 8.2470 1.6391 4.8288 50 1 8.9972 3.2589 4.8045 51 1 10.8044 1.5237 6.5356 52 1 2.0823 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049556752.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:56 Heat of formation + Delta-G solvation = 13.729621 kcal Electronic energy + Delta-G solvation = -30574.763105 eV Core-core repulsion = 26732.393649 eV Total energy + Delta-G solvation = -3842.369456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.46136 -39.44145 -37.68906 -35.45382 -34.54105 -32.67402 -32.56092 -31.95781 -29.67073 -29.07806 -28.29327 -27.46232 -24.48680 -24.31987 -24.05689 -22.20571 -21.48518 -21.12927 -20.25106 -19.62965 -18.63841 -16.83356 -16.59548 -16.06615 -15.91393 -15.71319 -15.17652 -14.89676 -14.70678 -14.22010 -14.09566 -13.96017 -13.81964 -13.60136 -13.41831 -13.19972 -12.99554 -12.92036 -12.42153 -12.30172 -12.14359 -11.94565 -11.87699 -11.76206 -11.56906 -11.39450 -11.12187 -10.93372 -10.86458 -10.83829 -10.69518 -10.51089 -10.41570 -10.07545 -9.96787 -9.81510 -9.60187 -9.06637 -8.77625 -8.61526 -8.51150 -8.17818 -6.79092 -5.68880 -3.03032 1.30361 1.38237 2.88540 3.19365 3.41239 3.46059 3.48393 3.74966 4.50836 4.54308 4.60151 4.70048 4.75558 4.89396 4.97993 5.04911 5.07936 5.15521 5.18584 5.28528 5.32699 5.35771 5.39310 5.46816 5.47639 5.53788 5.59068 5.65660 5.72032 5.74474 5.79069 5.90818 5.93769 6.01113 6.03606 6.07185 6.11463 6.28498 6.31168 6.41230 6.42197 6.53029 6.58368 6.59681 6.74369 6.82425 6.92981 6.98284 7.22268 7.62539 7.70772 7.77241 7.88428 8.29674 8.49785 9.23540 9.86496 10.53883 11.42835 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.002650 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.956798 B =10563.029023 C =11098.925000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.057 4.057 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.522 6.522 11 N -0.603 5.603 12 C 0.111 3.889 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.018 0.982 17 C 0.117 3.883 18 H 0.077 0.923 19 C -0.128 4.128 20 C 0.175 3.825 21 N -0.592 5.592 22 C -0.229 4.229 23 H 0.078 0.922 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.101 4.101 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.042 0.958 50 H 0.049 0.951 51 H 0.252 0.748 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.516 5.158 -11.499 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.143 4.143 9 C 0.303 3.697 10 O -0.398 6.398 11 N -0.336 5.336 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.154 4.154 15 C 0.050 3.950 16 H 0.035 0.965 17 C 0.013 3.987 18 H 0.095 0.905 19 C -0.167 4.167 20 C 0.050 3.950 21 N -0.317 5.317 22 C -0.358 4.358 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.564 5.564 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.119 4.119 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.067 0.933 51 H 0.063 0.937 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.905 4.694 -11.794 23.608 hybrid contribution 0.523 -0.075 1.016 1.145 sum -19.383 4.620 -10.778 22.654 Atomic orbital electron populations 1.21739 0.94839 1.01584 1.02077 1.20546 0.96005 0.92806 1.02991 1.19819 0.99197 0.96046 0.93091 1.20960 1.00624 0.95015 0.97320 1.21040 0.99708 0.94979 0.97771 1.20931 0.99910 0.99970 0.92004 1.19271 0.98499 0.94336 0.93658 1.20742 0.95529 1.02039 0.95996 1.20329 0.89067 0.79782 0.80490 1.90733 1.57651 1.38044 1.53335 1.48052 1.12816 1.51248 1.21529 1.21706 0.94429 0.94300 0.90801 1.21898 0.98405 1.01556 0.94970 1.21426 0.93897 1.00034 1.00066 1.20742 0.88774 0.93714 0.91792 0.96513 1.22378 0.80985 0.98826 0.96515 0.90527 1.22944 0.97833 0.98144 0.97771 1.21499 0.92975 0.99223 0.81265 1.43786 1.09138 1.75732 1.02995 1.18996 1.00300 1.32730 0.83726 0.90424 1.24837 0.97466 1.00804 0.97165 1.69987 1.13953 1.46636 1.25849 0.86146 0.78319 0.78128 0.83444 1.21660 1.21783 1.20665 1.20836 0.99586 0.93921 0.97603 0.92577 0.92683 0.92492 0.91097 0.90926 0.86457 0.86258 0.86434 0.88321 0.88343 0.90389 0.91575 0.91831 0.90929 0.91474 0.91824 0.90066 0.92272 0.93996 0.93286 0.93733 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.73 16 2 C -0.09 -0.78 6.06 -27.88 -0.17 -0.95 16 3 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 4 C -0.12 -1.29 9.70 -39.59 -0.38 -1.68 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.11 -1.28 9.70 -39.58 -0.38 -1.67 16 7 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 8 C -0.10 -1.13 4.25 -29.03 -0.12 -1.25 16 9 C 0.52 7.99 7.69 -10.99 -0.08 7.91 16 10 O -0.52 -10.20 12.91 5.56 0.07 -10.13 16 11 N -0.60 -9.20 2.91 -164.01 -0.48 -9.68 16 12 C 0.11 1.23 6.32 -3.44 -0.02 1.21 16 13 C -0.13 -1.57 5.93 -26.42 -0.16 -1.72 16 14 C -0.12 -1.95 5.42 -27.24 -0.15 -2.10 16 15 C 0.16 3.32 2.60 -68.38 -0.18 3.14 16 16 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 17 C 0.12 2.24 3.30 -66.82 -0.22 2.02 16 18 H 0.08 1.49 8.13 -51.93 -0.42 1.06 16 19 C -0.13 -2.80 5.04 -25.19 -0.13 -2.92 16 20 C 0.18 4.51 5.39 -2.43 -0.01 4.50 16 21 N -0.59 -15.30 3.30 -164.36 -0.54 -15.84 16 22 C -0.23 -6.36 9.95 -15.06 -0.15 -6.51 16 23 H 0.08 2.06 7.31 -52.49 -0.38 1.68 16 24 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 25 N -0.92 -27.43 10.40 55.49 0.58 -26.85 16 26 Si 0.91 22.22 29.56 -169.99 -5.02 17.20 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 C -0.10 -1.24 9.36 -39.58 -0.37 -1.61 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.10 0.89 7.70 -51.93 -0.40 0.49 16 40 H 0.10 0.84 7.96 -51.93 -0.41 0.42 16 41 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.19 7.75 -51.93 -0.40 0.78 16 46 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 47 H 0.08 1.87 6.25 -51.93 -0.32 1.54 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.04 1.20 7.58 -51.92 -0.39 0.80 16 50 H 0.05 1.37 7.39 -51.93 -0.38 0.99 16 51 H 0.25 7.33 8.31 -40.81 -0.34 6.99 16 52 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -33.32 402.17 -11.89 -45.22 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.91 Total: 0.91 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.65 Total: -6.88 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.44 Total: -52.37 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.32 -11.89 -45.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049556752.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.949 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds