Wall clock time and date at job start Wed Apr 1 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38256 * 120.00394 * 2 1 4 4 C 1.38213 * 120.00145 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00249 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00146 * 179.97438 * 5 4 3 7 7 C 1.38213 * 119.99997 * 359.94761 * 5 4 3 8 8 C 1.50694 * 120.00039 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47299 * 85.00115 * 8 7 5 10 10 O 1.21277 * 120.00231 * 0.02562 * 9 8 7 11 11 N 1.34787 * 119.99859 * 179.97438 * 9 8 7 12 12 C 1.47844 * 122.22869 * 0.02562 * 11 9 8 13 13 C 1.52716 * 111.06460 * 232.46409 * 12 11 9 14 14 C 1.53870 * 111.51951 * 311.47079 * 13 12 11 15 15 C 1.51078 * 107.34006 * 56.92698 * 14 13 12 16 16 H 1.09006 * 108.31017 * 51.23866 * 15 14 13 17 17 C 1.45719 * 122.22741 * 179.97438 * 11 9 8 18 18 H 1.08998 * 111.64178 * 240.86292 * 17 11 9 19 19 C 1.53437 * 116.37564 * 9.91312 * 17 11 9 20 20 C 1.55532 * 101.76028 * 152.52414 * 19 17 11 21 21 N 1.45034 * 119.18840 * 176.10984 * 15 14 13 22 22 C 1.36939 * 126.55732 * 331.18910 * 21 15 14 23 23 H 1.07997 * 120.00067 * 19.30790 * 22 21 15 24 24 C 1.38814 * 119.99883 * 199.29966 * 22 21 15 25 25 N 1.31618 * 120.00057 * 186.25877 * 24 22 21 26 26 Si 1.86802 * 119.99679 * 6.26547 * 24 22 21 27 27 H 1.48506 * 109.46992 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.46954 * 299.99349 * 26 24 22 29 29 H 1.48493 * 109.47358 * 59.99499 * 26 24 22 30 30 C 1.38221 * 119.99897 * 180.21193 * 2 1 3 31 31 H 1.09000 * 109.47288 * 90.00154 * 1 2 3 32 32 H 1.09004 * 109.47432 * 209.99858 * 1 2 3 33 33 H 1.09002 * 109.47061 * 329.99983 * 1 2 3 34 34 H 1.08008 * 119.99650 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.99977 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.46852 * 269.96976 * 6 5 4 37 37 H 1.08999 * 109.47206 * 29.96707 * 6 5 4 38 38 H 1.08995 * 109.47224 * 149.97205 * 6 5 4 39 39 H 1.08998 * 109.47151 * 324.99650 * 8 7 5 40 40 H 1.09007 * 109.46774 * 205.00369 * 8 7 5 41 41 H 1.09004 * 109.16198 * 352.87083 * 12 11 9 42 42 H 1.09006 * 109.16149 * 112.10971 * 12 11 9 43 43 H 1.09001 * 109.07094 * 71.99530 * 13 12 11 44 44 H 1.09002 * 109.07288 * 191.01741 * 13 12 11 45 45 H 1.09001 * 109.88651 * 297.46267 * 14 13 12 46 46 H 1.09007 * 109.88201 * 176.38642 * 14 13 12 47 47 H 1.09001 * 110.98406 * 270.81881 * 19 17 11 48 48 H 1.08992 * 110.99003 * 34.59336 * 19 17 11 49 49 H 1.09004 * 110.07957 * 218.31678 * 20 19 17 50 50 H 1.08996 * 109.87005 * 97.05943 * 20 19 17 51 51 H 0.97001 * 120.00079 * 5.09003 * 25 24 22 52 52 H 1.08000 * 120.00086 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 3.5806 -1.1971 -0.0010 8 6 4.3341 -2.5021 -0.0016 9 6 4.6936 -2.8753 1.4135 10 8 4.3695 -2.1529 2.3321 11 7 5.3745 -4.0124 1.6583 12 6 5.7935 -4.9289 0.5765 13 6 5.3374 -6.3584 0.8607 14 6 5.6916 -6.7893 2.2947 15 6 5.0539 -5.7932 3.2347 16 1 4.0010 -5.6976 2.9695 17 6 5.7476 -4.4198 3.0067 18 1 6.8291 -4.4969 3.1186 19 6 5.1279 -3.6163 4.1576 20 6 5.1120 -4.6663 5.3048 21 7 5.1556 -6.0058 4.6658 22 6 5.2660 -7.2116 5.3054 23 1 5.5935 -8.0843 4.7599 24 6 4.9573 -7.3122 6.6551 25 7 5.1799 -8.4383 7.2990 26 14 4.2256 -5.8492 7.5572 27 1 3.9881 -6.2119 8.9776 28 1 5.1682 -4.7039 7.4893 29 1 2.9383 -5.4692 6.9220 30 6 2.1980 -1.1970 -0.0044 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6583 2.1327 0.0004 35 1 4.1205 2.1325 -0.0010 36 1 6.1412 -0.0002 -1.0307 37 1 6.1424 0.8899 0.5107 38 1 6.1424 -0.8900 0.5108 39 1 5.2443 -2.3959 -0.5918 40 1 3.7087 -3.2824 -0.4355 41 1 5.3571 -4.5947 -0.3648 42 1 6.8802 -4.9109 0.4932 43 1 4.2575 -6.4210 0.7266 44 1 5.8233 -7.0340 0.1567 45 1 6.7736 -6.7838 2.4270 46 1 5.2987 -7.7872 2.4897 47 1 5.7517 -2.7609 4.4167 48 1 4.1152 -3.2978 3.9104 49 1 4.1998 -4.5646 5.8927 50 1 5.9842 -4.5297 5.9441 51 1 5.6272 -9.1731 6.8507 52 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049688246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:25 Heat of formation + Delta-G solvation = 23.143556 kcal Electronic energy + Delta-G solvation = -31130.953403 eV Core-core repulsion = 27288.992165 eV Total energy + Delta-G solvation = -3841.961238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.21 seconds Orbital eigenvalues (eV) -40.71248 -39.64092 -37.85293 -35.69824 -34.34501 -32.80811 -32.65388 -32.11828 -29.62524 -29.43530 -28.72888 -27.80769 -25.01501 -24.69958 -23.84882 -22.45216 -21.78225 -21.40300 -20.38676 -19.60134 -18.74712 -17.31936 -16.41262 -16.25366 -16.19699 -15.82384 -15.19822 -15.00032 -14.74711 -14.37881 -14.27805 -14.11253 -13.95859 -13.46322 -13.42686 -13.25878 -13.06171 -12.88490 -12.80401 -12.72316 -12.33511 -12.24198 -12.10479 -11.98433 -11.92984 -11.60659 -11.40019 -11.14859 -11.07725 -10.98598 -10.78709 -10.66058 -10.55572 -10.24607 -10.04532 -9.33665 -9.05840 -9.03386 -8.80232 -8.68773 -8.46580 -8.33880 -6.96507 -6.27901 -3.25225 1.22574 1.30774 2.73393 3.03314 3.48585 3.55432 3.63141 3.76001 4.46824 4.52747 4.61373 4.65459 4.71615 4.76241 4.86920 4.96553 5.03368 5.08267 5.10745 5.22697 5.23465 5.26813 5.32022 5.38641 5.40967 5.42650 5.46156 5.54424 5.58512 5.60688 5.62357 5.64706 5.78385 5.79956 5.87009 5.96340 5.99828 6.09246 6.10002 6.22099 6.28388 6.33563 6.47834 6.52709 6.53519 6.55080 6.58665 6.68271 6.91628 6.93310 7.03336 7.58728 7.76322 8.33046 8.35858 9.04636 9.60151 10.28716 11.22703 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003177 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.465810 B = 8812.216921 C = 9623.237052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.115 4.115 7 C -0.059 4.059 8 C -0.104 4.104 9 C 0.518 3.482 10 O -0.522 6.522 11 N -0.602 5.602 12 C 0.110 3.890 13 C -0.130 4.130 14 C -0.114 4.114 15 C 0.159 3.841 16 H 0.021 0.979 17 C 0.117 3.883 18 H 0.082 0.918 19 C -0.114 4.114 20 C 0.103 3.897 21 N -0.603 5.603 22 C -0.317 4.317 23 H 0.077 0.923 24 C -0.019 4.019 25 N -0.932 5.932 26 Si 1.070 2.930 27 H -0.302 1.302 28 H -0.283 1.283 29 H -0.297 1.297 30 C -0.103 4.103 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.033 0.967 50 H 0.050 0.950 51 H 0.260 0.740 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 16.182 -21.847 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.059 4.059 8 C -0.143 4.143 9 C 0.306 3.694 10 O -0.398 6.398 11 N -0.336 5.336 12 C -0.012 4.012 13 C -0.169 4.169 14 C -0.152 4.152 15 C 0.050 3.950 16 H 0.039 0.961 17 C 0.013 3.987 18 H 0.100 0.900 19 C -0.152 4.152 20 C -0.022 4.022 21 N -0.329 5.329 22 C -0.444 4.444 23 H 0.095 0.905 24 C -0.218 4.218 25 N -0.574 5.574 26 Si 0.904 3.096 27 H -0.230 1.230 28 H -0.210 1.210 29 H -0.225 1.225 30 C -0.121 4.121 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.051 0.949 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.443 16.968 -19.836 26.218 hybrid contribution 0.653 -0.681 -1.527 1.795 sum -1.790 16.287 -21.364 26.924 Atomic orbital electron populations 1.20770 0.91317 1.02844 1.02031 1.19824 0.95952 0.93077 1.00386 1.20962 0.94144 0.97353 1.01240 1.20932 0.94140 0.97258 1.01183 1.19650 0.95817 0.92556 0.99388 1.20802 0.91499 1.03104 1.01747 1.19108 0.93285 0.93131 1.00381 1.20741 1.01726 0.96228 0.95636 1.20339 0.77835 0.80407 0.90836 1.90719 1.52962 1.50617 1.45488 1.47989 1.56042 1.21557 1.07984 1.21731 0.99941 0.89983 0.89580 1.21910 1.01843 0.95066 0.98062 1.21381 1.00844 1.00257 0.92725 1.20749 0.96188 0.91859 0.86235 0.96114 1.22329 0.98721 0.96792 0.80907 0.89999 1.22683 1.02778 0.96399 0.93352 1.22675 0.98957 0.85257 0.95269 1.44395 1.87037 1.01581 0.99906 1.20115 1.43922 0.85655 0.94717 0.90519 1.25936 0.99425 1.02505 0.93930 1.70905 1.43312 1.04228 1.38912 0.83857 0.76444 0.74439 0.74834 1.23041 1.21021 1.22538 1.20849 0.93269 0.97643 1.00355 0.91392 0.91528 0.91654 0.86341 0.86242 0.91338 0.91509 0.91606 0.88155 0.88297 0.90210 0.91422 0.91722 0.90736 0.91892 0.91239 0.91310 0.89123 0.94923 0.93234 0.92963 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.09 -1.00 5.88 -104.63 -0.62 -1.62 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.07 -0.84 5.88 -104.63 -0.62 -1.46 16 6 C -0.11 -1.09 9.22 36.01 0.33 -0.76 16 7 C -0.06 -0.69 4.37 -104.63 -0.46 -1.15 16 8 C -0.10 -1.08 3.57 -29.04 -0.10 -1.18 16 9 C 0.52 7.44 6.91 -10.98 -0.08 7.36 16 10 O -0.52 -9.43 12.86 5.56 0.07 -9.36 16 11 N -0.60 -8.53 2.91 -163.96 -0.48 -9.01 16 12 C 0.11 1.15 6.32 -3.45 -0.02 1.13 16 13 C -0.13 -1.54 5.92 -26.42 -0.16 -1.69 16 14 C -0.11 -1.91 5.38 -27.24 -0.15 -2.06 16 15 C 0.16 3.21 2.58 -68.33 -0.18 3.04 16 16 H 0.02 0.47 8.03 -51.93 -0.42 0.05 16 17 C 0.12 2.07 3.33 -66.77 -0.22 1.85 16 18 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 19 C -0.11 -2.25 5.01 -25.16 -0.13 -2.37 16 20 C 0.10 2.38 4.66 -1.61 -0.01 2.37 16 21 N -0.60 -15.00 3.23 -163.13 -0.53 -15.53 16 22 C -0.32 -9.06 10.27 -15.06 -0.15 -9.22 16 23 H 0.08 2.28 7.59 -52.49 -0.40 1.88 16 24 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 25 N -0.93 -29.62 13.70 55.49 0.76 -28.86 16 26 Si 1.07 27.87 24.61 -169.99 -4.18 23.69 16 27 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 28 H -0.28 -6.78 5.30 56.52 0.30 -6.48 16 29 H -0.30 -7.62 6.87 56.52 0.39 -7.23 16 30 C -0.10 -1.20 9.34 -39.58 -0.37 -1.57 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.59 8.09 -51.93 -0.42 0.18 16 38 H 0.06 0.69 6.16 -51.93 -0.32 0.37 16 39 H 0.10 0.81 6.86 -51.93 -0.36 0.46 16 40 H 0.10 0.85 7.66 -51.93 -0.40 0.45 16 41 H 0.08 0.59 6.18 -51.93 -0.32 0.27 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 46 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.09 1.90 6.20 -51.93 -0.32 1.57 16 49 H 0.03 0.81 4.11 -51.93 -0.21 0.59 16 50 H 0.05 1.17 6.75 -51.93 -0.35 0.82 16 51 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 52 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -34.73 389.83 -10.58 -45.31 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.68 Total: -0.32 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.42 Total: -11.80 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.24 Total: -53.40 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 27.87 SS G_CDS: -4.18 Total: 23.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.73 -10.58 -45.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049688246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.454 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.21 seconds