Wall clock time and date at job start Wed Apr 1 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38256 * 120.00394 * 2 1 4 4 C 1.38213 * 120.00145 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00249 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00146 * 179.97438 * 5 4 3 7 7 C 1.38213 * 119.99997 * 359.94761 * 5 4 3 8 8 C 1.50694 * 120.00039 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47299 * 85.00115 * 8 7 5 10 10 O 1.21277 * 120.00231 * 0.02562 * 9 8 7 11 11 N 1.34787 * 119.99859 * 179.97438 * 9 8 7 12 12 C 1.47844 * 122.22869 * 0.02562 * 11 9 8 13 13 C 1.52716 * 111.06460 * 232.46409 * 12 11 9 14 14 C 1.53870 * 111.51951 * 311.47079 * 13 12 11 15 15 C 1.51078 * 107.34006 * 56.92698 * 14 13 12 16 16 H 1.09006 * 108.31017 * 51.23866 * 15 14 13 17 17 C 1.45719 * 122.22741 * 179.97438 * 11 9 8 18 18 H 1.08998 * 111.64178 * 240.86292 * 17 11 9 19 19 C 1.53437 * 116.37564 * 9.91312 * 17 11 9 20 20 C 1.55532 * 101.76028 * 152.52414 * 19 17 11 21 21 N 1.45034 * 119.18840 * 176.10984 * 15 14 13 22 22 C 1.36939 * 126.55732 * 331.18910 * 21 15 14 23 23 H 1.07997 * 120.00067 * 19.30790 * 22 21 15 24 24 C 1.38814 * 119.99883 * 199.29966 * 22 21 15 25 25 N 1.31618 * 120.00057 * 186.25877 * 24 22 21 26 26 Si 1.86802 * 119.99679 * 6.26547 * 24 22 21 27 27 H 1.48506 * 109.46992 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.46954 * 299.99349 * 26 24 22 29 29 H 1.48493 * 109.47358 * 59.99499 * 26 24 22 30 30 C 1.38221 * 119.99897 * 180.21193 * 2 1 3 31 31 H 1.09000 * 109.47288 * 90.00154 * 1 2 3 32 32 H 1.09004 * 109.47432 * 209.99858 * 1 2 3 33 33 H 1.09002 * 109.47061 * 329.99983 * 1 2 3 34 34 H 1.08008 * 119.99650 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.99977 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.46852 * 269.96976 * 6 5 4 37 37 H 1.08999 * 109.47206 * 29.96707 * 6 5 4 38 38 H 1.08995 * 109.47224 * 149.97205 * 6 5 4 39 39 H 1.08998 * 109.47151 * 324.99650 * 8 7 5 40 40 H 1.09007 * 109.46774 * 205.00369 * 8 7 5 41 41 H 1.09004 * 109.16198 * 352.87083 * 12 11 9 42 42 H 1.09006 * 109.16149 * 112.10971 * 12 11 9 43 43 H 1.09001 * 109.07094 * 71.99530 * 13 12 11 44 44 H 1.09002 * 109.07288 * 191.01741 * 13 12 11 45 45 H 1.09001 * 109.88651 * 297.46267 * 14 13 12 46 46 H 1.09007 * 109.88201 * 176.38642 * 14 13 12 47 47 H 1.09001 * 110.98406 * 270.81881 * 19 17 11 48 48 H 1.08992 * 110.99003 * 34.59336 * 19 17 11 49 49 H 1.09004 * 110.07957 * 218.31678 * 20 19 17 50 50 H 1.08996 * 109.87005 * 97.05943 * 20 19 17 51 51 H 0.97001 * 120.00079 * 5.09003 * 25 24 22 52 52 H 1.08000 * 120.00086 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 3.5806 -1.1971 -0.0010 8 6 4.3341 -2.5021 -0.0016 9 6 4.6936 -2.8753 1.4135 10 8 4.3695 -2.1529 2.3321 11 7 5.3745 -4.0124 1.6583 12 6 5.7935 -4.9289 0.5765 13 6 5.3374 -6.3584 0.8607 14 6 5.6916 -6.7893 2.2947 15 6 5.0539 -5.7932 3.2347 16 1 4.0010 -5.6976 2.9695 17 6 5.7476 -4.4198 3.0067 18 1 6.8291 -4.4969 3.1186 19 6 5.1279 -3.6163 4.1576 20 6 5.1120 -4.6663 5.3048 21 7 5.1556 -6.0058 4.6658 22 6 5.2660 -7.2116 5.3054 23 1 5.5935 -8.0843 4.7599 24 6 4.9573 -7.3122 6.6551 25 7 5.1799 -8.4383 7.2990 26 14 4.2256 -5.8492 7.5572 27 1 3.9881 -6.2119 8.9776 28 1 5.1682 -4.7039 7.4893 29 1 2.9383 -5.4692 6.9220 30 6 2.1980 -1.1970 -0.0044 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6583 2.1327 0.0004 35 1 4.1205 2.1325 -0.0010 36 1 6.1412 -0.0002 -1.0307 37 1 6.1424 0.8899 0.5107 38 1 6.1424 -0.8900 0.5108 39 1 5.2443 -2.3959 -0.5918 40 1 3.7087 -3.2824 -0.4355 41 1 5.3571 -4.5947 -0.3648 42 1 6.8802 -4.9109 0.4932 43 1 4.2575 -6.4210 0.7266 44 1 5.8233 -7.0340 0.1567 45 1 6.7736 -6.7838 2.4270 46 1 5.2987 -7.7872 2.4897 47 1 5.7517 -2.7609 4.4167 48 1 4.1152 -3.2978 3.9104 49 1 4.1998 -4.5646 5.8927 50 1 5.9842 -4.5297 5.9441 51 1 5.6272 -9.1731 6.8507 52 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049688246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:19 Heat of formation + Delta-G solvation = 2.601233 kcal Electronic energy + Delta-G solvation = -31131.844185 eV Core-core repulsion = 27288.992165 eV Total energy + Delta-G solvation = -3842.852020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.88501 -40.58943 -39.16417 -37.09542 -35.15673 -34.59375 -33.91386 -33.26667 -31.33209 -30.13839 -30.11196 -28.79552 -26.09774 -25.83948 -25.50939 -23.59275 -22.98798 -22.62814 -21.59902 -21.07046 -19.83089 -19.33374 -17.54509 -17.44957 -17.12817 -16.80384 -16.70179 -16.27458 -15.99277 -15.81147 -15.50338 -15.38686 -14.98502 -14.62438 -14.56892 -14.46443 -14.08951 -13.95934 -13.88401 -13.60124 -13.54940 -13.50788 -13.48917 -13.14129 -12.87528 -12.73818 -12.69502 -12.42414 -12.32953 -12.10702 -11.92124 -11.84739 -11.80297 -11.70425 -11.57037 -11.28017 -11.19188 -10.78301 -10.42019 -9.64548 -9.57613 -9.22950 -9.07663 -8.64425 -5.54585 0.43792 0.51940 1.37613 1.43722 1.65400 1.67676 1.96406 2.49157 2.82688 3.06866 3.17396 3.50683 3.66831 3.80884 3.86840 3.90096 4.01687 4.01823 4.06580 4.12410 4.15674 4.19274 4.33007 4.36449 4.37029 4.39208 4.52969 4.59681 4.61520 4.67390 4.69970 4.73064 4.80569 4.82172 4.83997 4.87732 4.92341 4.93821 5.01234 5.07157 5.13397 5.20168 5.21634 5.26109 5.39361 5.40309 5.51142 5.56623 5.68225 5.72755 5.76651 6.09460 6.18463 6.52358 6.76908 7.24828 7.42752 8.10963 8.87750 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003177 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.465810 B = 8812.216921 C = 9623.237052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.129 4.129 5 C -0.089 4.089 6 C -0.112 4.112 7 C -0.075 4.075 8 C -0.093 4.093 9 C 0.515 3.485 10 O -0.565 6.565 11 N -0.602 5.602 12 C 0.106 3.894 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.148 3.852 16 H 0.003 0.997 17 C 0.134 3.866 18 H 0.087 0.913 19 C -0.100 4.100 20 C 0.096 3.904 21 N -0.623 5.623 22 C -0.297 4.297 23 H 0.055 0.945 24 C -0.075 4.075 25 N -0.967 5.967 26 Si 1.104 2.896 27 H -0.309 1.309 28 H -0.252 1.252 29 H -0.296 1.296 30 C -0.123 4.123 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.041 0.959 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.022 0.978 50 H 0.045 0.955 51 H 0.249 0.751 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 18.394 -25.164 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.146 4.146 4 C -0.147 4.147 5 C -0.090 4.090 6 C -0.168 4.168 7 C -0.076 4.076 8 C -0.133 4.133 9 C 0.305 3.695 10 O -0.443 6.443 11 N -0.335 5.335 12 C -0.015 4.015 13 C -0.159 4.159 14 C -0.150 4.150 15 C 0.040 3.960 16 H 0.021 0.979 17 C 0.028 3.972 18 H 0.105 0.895 19 C -0.138 4.138 20 C -0.029 4.029 21 N -0.349 5.349 22 C -0.426 4.426 23 H 0.073 0.927 24 C -0.268 4.268 25 N -0.612 5.612 26 Si 0.933 3.067 27 H -0.238 1.238 28 H -0.177 1.177 29 H -0.224 1.224 30 C -0.141 4.141 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.039 0.961 50 H 0.063 0.937 51 H 0.058 0.942 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.896 19.196 -23.232 30.196 hybrid contribution 0.460 -1.371 -0.584 1.559 sum -1.436 17.826 -23.816 29.783 Atomic orbital electron populations 1.20795 0.89950 1.03036 1.03007 1.20164 0.97218 0.93147 1.00148 1.21270 0.94442 0.98075 1.00823 1.21250 0.94529 0.97981 1.00899 1.19972 0.96907 0.92742 0.99334 1.20808 0.90305 1.02661 1.03036 1.19331 0.93492 0.93943 1.00817 1.20764 1.03305 0.96222 0.92967 1.21051 0.76629 0.79651 0.92131 1.90699 1.54459 1.51986 1.47195 1.48091 1.55988 1.22335 1.07119 1.22075 1.01636 0.88033 0.89761 1.21890 1.02196 0.96962 0.94839 1.21380 1.00270 0.97954 0.95416 1.21005 0.95869 0.94937 0.84158 0.97902 1.21948 0.98364 0.94210 0.82659 0.89513 1.22526 1.02645 0.95724 0.92940 1.22740 0.97998 0.85473 0.96640 1.44517 1.86954 1.01106 1.02342 1.20032 1.41324 0.86695 0.94511 0.92701 1.26991 1.00489 1.03906 0.95394 1.70985 1.45774 1.04981 1.39464 0.83443 0.76587 0.73256 0.73388 1.23793 1.17736 1.22390 1.21084 0.93756 0.98212 1.01030 0.89973 0.91906 0.90880 0.84529 0.84575 0.89089 0.91369 0.92596 0.85142 0.86033 0.85994 0.89281 0.91930 0.87309 0.91927 0.94045 0.90069 0.90286 0.96076 0.93714 0.94150 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.01 71.23 0.71 -0.98 16 2 C -0.11 -2.16 5.88 -19.87 -0.12 -2.28 16 3 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 4 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 5 C -0.09 -1.83 5.88 -19.87 -0.12 -1.95 16 6 C -0.11 -1.80 9.22 71.24 0.66 -1.14 16 7 C -0.08 -1.60 4.37 -19.87 -0.09 -1.69 16 8 C -0.09 -1.59 3.57 29.10 0.10 -1.49 16 9 C 0.52 13.40 6.91 87.65 0.61 14.01 16 10 O -0.56 -19.62 12.86 -3.02 -0.04 -19.66 16 11 N -0.60 -15.21 2.91 -791.05 -2.30 -17.52 16 12 C 0.11 1.70 6.32 86.03 0.54 2.24 16 13 C -0.12 -2.43 5.92 30.79 0.18 -2.25 16 14 C -0.11 -3.66 5.38 30.26 0.16 -3.49 16 15 C 0.15 5.95 2.58 45.52 0.12 6.07 16 16 H 0.00 0.15 8.03 -2.38 -0.02 0.13 16 17 C 0.13 4.52 3.33 46.16 0.15 4.67 16 18 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 19 C -0.10 -3.87 5.01 31.61 0.16 -3.71 16 20 C 0.10 4.42 4.66 86.87 0.41 4.82 16 21 N -0.62 -31.36 3.23 -670.02 -2.16 -33.52 16 22 C -0.30 -17.50 10.27 84.03 0.86 -16.64 16 23 H 0.06 3.42 7.59 -2.91 -0.02 3.39 16 24 C -0.07 -4.60 5.50 84.86 0.47 -4.14 16 25 N -0.97 -63.67 13.70 21.65 0.30 -63.37 16 26 Si 1.10 57.48 24.61 68.60 1.69 59.17 16 27 H -0.31 -16.32 7.11 99.48 0.71 -15.61 16 28 H -0.25 -11.76 5.30 99.48 0.53 -11.23 16 29 H -0.30 -15.13 6.87 99.48 0.68 -14.44 16 30 C -0.12 -2.68 9.34 22.27 0.21 -2.47 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 38 H 0.06 1.01 6.16 -2.39 -0.01 1.00 16 39 H 0.13 1.44 6.86 -2.39 -0.02 1.42 16 40 H 0.12 1.53 7.66 -2.38 -0.02 1.51 16 41 H 0.12 1.03 6.18 -2.38 -0.01 1.02 16 42 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 45 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 46 H 0.04 1.56 7.85 -2.38 -0.02 1.54 16 47 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 48 H 0.08 3.28 6.20 -2.39 -0.01 3.26 16 49 H 0.02 1.05 4.11 -2.38 -0.01 1.04 16 50 H 0.04 2.09 6.75 -2.39 -0.02 2.08 16 51 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 52 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -79.82 389.83 3.59 -76.22 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.66 Total: 13.59 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.45 Total: -14.92 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -4.17 Total: -114.41 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.04 Total: -19.66 kcal Atomic # 14 Polarization: 57.48 SS G_CDS: 1.69 Total: 59.17 kcal Total: -79.82 3.59 -76.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049688246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.825 kcal (2) G-P(sol) polarization free energy of solvation -79.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds