Wall clock time and date at job start Wed Apr 1 2020 01:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38259 * 120.00415 * 2 1 4 4 C 1.38209 * 120.00322 * 180.02562 * 3 2 1 5 5 C 1.38264 * 120.00256 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00020 * 179.97438 * 5 4 3 7 7 C 1.38215 * 119.99688 * 359.95598 * 5 4 3 8 8 C 1.50698 * 120.00116 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46883 * 84.99921 * 8 7 5 10 10 O 1.21279 * 120.00336 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99993 * 180.02562 * 9 8 7 12 12 C 1.45737 * 117.75518 * 359.97438 * 11 9 8 13 13 C 1.53058 * 109.53993 * 218.89886 * 12 11 9 14 14 C 1.52941 * 108.49342 * 306.17071 * 13 12 11 15 15 C 1.52927 * 109.79399 * 65.99960 * 14 13 12 16 16 H 1.09003 * 111.26159 * 66.65561 * 15 14 13 17 17 C 1.44184 * 117.76226 * 179.97438 * 11 9 8 18 18 H 1.09004 * 109.22410 * 27.38517 * 17 11 9 19 19 C 1.54062 * 111.76595 * 266.48722 * 17 11 9 20 20 C 1.54056 * 103.74543 * 206.75068 * 19 17 11 21 21 N 1.46882 * 107.70905 * 17.12420 * 20 19 17 22 22 C 1.36937 * 125.58057 * 182.94419 * 21 20 19 23 23 H 1.07998 * 120.00092 * 180.02562 * 22 21 20 24 24 C 1.38810 * 119.99829 * 0.02562 * 22 21 20 25 25 N 1.31618 * 120.00200 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99927 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47037 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47340 * 119.99902 * 26 24 22 29 29 H 1.48507 * 109.47237 * 240.00133 * 26 24 22 30 30 C 1.38223 * 120.00148 * 180.21073 * 2 1 3 31 31 H 1.09002 * 109.47344 * 89.99999 * 1 2 3 32 32 H 1.09006 * 109.47101 * 209.99972 * 1 2 3 33 33 H 1.08999 * 109.47467 * 329.99836 * 1 2 3 34 34 H 1.08003 * 119.99639 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.00327 * 179.97438 * 4 3 2 36 36 H 1.08999 * 109.47453 * 269.97502 * 6 5 4 37 37 H 1.08999 * 109.47327 * 29.97834 * 6 5 4 38 38 H 1.09005 * 109.47031 * 149.97868 * 6 5 4 39 39 H 1.09000 * 109.46751 * 325.00015 * 8 7 5 40 40 H 1.08997 * 109.47077 * 204.99877 * 8 7 5 41 41 H 1.09002 * 109.45940 * 338.91945 * 12 11 9 42 42 H 1.09000 * 109.45877 * 98.88393 * 12 11 9 43 43 H 1.09003 * 109.62836 * 65.88774 * 13 12 11 44 44 H 1.08998 * 109.63090 * 186.48164 * 13 12 11 45 45 H 1.08998 * 109.41502 * 305.90962 * 14 13 12 46 46 H 1.09000 * 109.37498 * 186.07003 * 14 13 12 47 47 H 1.08999 * 110.56885 * 325.31225 * 19 17 11 48 48 H 1.09004 * 110.56966 * 88.18285 * 19 17 11 49 49 H 1.09002 * 109.80653 * 136.67635 * 20 19 17 50 50 H 1.09000 * 109.80742 * 257.50792 * 20 19 17 51 51 H 0.97006 * 119.99710 * 180.02562 * 25 24 22 52 52 H 1.07999 * 119.99643 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 3.5806 -1.1971 -0.0012 8 6 4.3341 -2.5022 -0.0018 9 6 4.6934 -2.8753 1.4134 10 8 4.3692 -2.1529 2.3320 11 7 5.3751 -4.0119 1.6582 12 6 5.7394 -4.8438 0.5183 13 6 5.5801 -6.3199 0.8901 14 6 6.3803 -6.5881 2.1655 15 6 5.7622 -5.8215 3.3355 16 1 4.7727 -6.2067 3.5818 17 6 5.6940 -4.3216 3.0298 18 1 4.9490 -3.8670 3.6829 19 6 7.0920 -3.8063 3.4217 20 6 7.5286 -4.7567 4.5528 21 7 6.6695 -5.9465 4.4932 22 6 6.7049 -6.9994 5.3681 23 1 6.0292 -7.8320 5.2387 24 6 7.6093 -6.9967 6.4211 25 7 8.4331 -5.9823 6.5785 26 14 7.6581 -8.4333 7.6141 27 1 6.6384 -9.4386 7.2203 28 1 9.0057 -9.0564 7.5838 29 1 7.3684 -7.9468 8.9870 30 6 2.1981 -1.1970 -0.0044 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1326 -0.0010 36 1 6.1413 0.0000 -1.0307 37 1 6.1424 0.8899 0.5108 38 1 6.1424 -0.8901 0.5107 39 1 5.2444 -2.3959 -0.5919 40 1 3.7088 -3.2824 -0.4357 41 1 5.0894 -4.6094 -0.3247 42 1 6.7758 -4.6486 0.2429 43 1 4.5273 -6.5420 1.0645 44 1 5.9600 -6.9443 0.0815 45 1 7.4104 -6.2616 2.0224 46 1 6.3657 -7.6559 2.3839 47 1 7.7768 -3.8767 2.5766 48 1 7.0340 -2.7801 3.7846 49 1 8.5701 -5.0454 4.4112 50 1 7.4102 -4.2622 5.5170 51 1 9.0653 -5.9806 7.3143 52 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049688247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:29 Heat of formation + Delta-G solvation = 7.508494 kcal Electronic energy + Delta-G solvation = -30804.079111 eV Core-core repulsion = 26961.439886 eV Total energy + Delta-G solvation = -3842.639225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.68255 -39.54987 -37.79844 -35.37261 -34.30570 -32.65959 -32.55778 -32.04082 -29.39771 -29.25320 -28.53184 -27.60302 -24.93468 -24.42262 -24.37421 -22.40061 -21.94166 -20.95332 -20.11347 -19.46287 -18.03458 -17.18558 -16.88788 -16.21087 -15.98734 -15.53456 -14.95812 -14.81452 -14.75013 -14.23950 -14.12357 -13.91307 -13.63748 -13.48710 -13.35313 -13.06639 -13.03739 -12.81242 -12.76877 -12.49803 -12.17991 -12.03429 -11.96892 -11.85190 -11.58089 -11.39584 -11.11323 -11.03931 -10.95552 -10.94080 -10.77191 -10.66305 -10.45025 -10.07252 -10.04089 -9.65366 -9.55950 -9.51758 -8.80082 -8.59878 -8.42678 -8.27325 -6.85780 -5.70861 -3.05577 1.26737 1.34464 2.79739 3.19180 3.39851 3.45294 3.47752 3.68989 4.48149 4.52019 4.64960 4.68393 4.77876 4.90415 4.96697 5.07440 5.08181 5.14841 5.27122 5.30290 5.36469 5.41780 5.42884 5.46237 5.48439 5.52612 5.56842 5.62810 5.65260 5.66859 5.71443 5.84003 5.91093 6.00619 6.03631 6.09874 6.15035 6.24572 6.30502 6.37204 6.39808 6.51202 6.59298 6.59542 6.60129 6.75894 6.96904 7.00983 7.12277 7.57967 7.57988 7.66619 7.84390 8.25342 8.41534 9.21442 9.81332 10.46353 11.40007 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002570 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.771024 B =10890.827740 C =11019.483004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.059 4.059 8 C -0.103 4.103 9 C 0.506 3.494 10 O -0.528 6.528 11 N -0.589 5.589 12 C 0.107 3.893 13 C -0.132 4.132 14 C -0.129 4.129 15 C 0.161 3.839 16 H 0.053 0.947 17 C 0.137 3.863 18 H 0.090 0.910 19 C -0.149 4.149 20 C 0.179 3.821 21 N -0.596 5.596 22 C -0.226 4.226 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.912 3.088 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.040 0.960 50 H 0.052 0.948 51 H 0.252 0.748 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 10.083 -19.697 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.173 4.173 7 C -0.060 4.060 8 C -0.143 4.143 9 C 0.293 3.707 10 O -0.404 6.404 11 N -0.321 5.321 12 C -0.016 4.016 13 C -0.171 4.171 14 C -0.170 4.170 15 C 0.052 3.948 16 H 0.071 0.929 17 C 0.032 3.968 18 H 0.108 0.892 19 C -0.189 4.189 20 C 0.054 3.946 21 N -0.320 5.320 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.062 0.938 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.848 10.369 -18.950 23.741 hybrid contribution 0.244 -0.823 0.679 1.094 sum -9.605 9.547 -18.271 22.743 Atomic orbital electron populations 1.20759 0.91363 1.02758 1.01990 1.19814 0.95902 0.93105 1.00593 1.20954 0.94145 0.97331 1.01299 1.20944 0.94136 0.97294 1.01124 1.19676 0.95901 0.92554 0.99138 1.20818 0.91405 1.03274 1.01801 1.19144 0.93305 0.93240 1.00279 1.20768 1.01799 0.96088 0.95658 1.20532 0.78079 0.81261 0.90867 1.90724 1.53232 1.50423 1.46053 1.47107 1.55580 1.22196 1.07251 1.21531 1.00529 0.91645 0.87856 1.21845 1.01380 0.94579 0.99253 1.22100 0.99520 1.01425 0.93933 1.20904 0.94220 0.91129 0.88524 0.92871 1.21076 0.97959 0.97116 0.80621 0.89189 1.22970 0.95654 1.00166 1.00073 1.21051 0.93998 0.85330 0.94179 1.44507 1.38959 1.20319 1.28255 1.19054 1.16033 0.96410 1.03942 0.90380 1.24808 0.98509 0.98139 0.98904 1.69988 1.24075 1.30265 1.32374 0.86052 0.77264 0.81454 0.81013 1.20519 1.21792 1.21757 1.20827 0.93243 0.97580 1.00528 0.91426 0.91603 0.91692 0.86367 0.86215 0.91281 0.91450 0.91479 0.88032 0.88189 0.90393 0.91894 0.91711 0.91121 0.91949 0.91889 0.92678 0.92034 0.94221 0.93012 0.93789 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.64 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 5 C -0.07 -0.87 5.88 -104.62 -0.62 -1.49 16 6 C -0.12 -1.22 9.22 36.00 0.33 -0.89 16 7 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 8 C -0.10 -1.12 3.48 -29.04 -0.10 -1.22 16 9 C 0.51 7.64 6.80 -10.98 -0.07 7.56 16 10 O -0.53 -10.24 15.32 5.56 0.09 -10.15 16 11 N -0.59 -8.85 2.80 -167.58 -0.47 -9.32 16 12 C 0.11 1.23 6.06 -4.42 -0.03 1.20 16 13 C -0.13 -1.63 6.10 -26.73 -0.16 -1.79 16 14 C -0.13 -2.22 5.31 -26.80 -0.14 -2.36 16 15 C 0.16 3.26 3.29 -67.24 -0.22 3.04 16 16 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.14 2.59 2.72 -68.49 -0.19 2.40 16 18 H 0.09 1.94 7.10 -51.93 -0.37 1.57 16 19 C -0.15 -2.99 6.45 -25.63 -0.17 -3.15 16 20 C 0.18 4.43 5.39 -3.28 -0.02 4.41 16 21 N -0.60 -14.98 2.94 -163.78 -0.48 -15.46 16 22 C -0.23 -6.21 10.27 -15.06 -0.15 -6.37 16 23 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 25 N -0.92 -27.06 10.29 55.49 0.57 -26.49 16 26 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 C -0.10 -1.21 9.34 -39.58 -0.37 -1.58 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.07 0.79 6.16 -51.93 -0.32 0.47 16 39 H 0.10 0.90 6.88 -51.93 -0.36 0.54 16 40 H 0.10 0.85 7.23 -51.93 -0.38 0.48 16 41 H 0.08 0.65 5.81 -51.93 -0.30 0.34 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.15 8.02 -51.93 -0.42 0.73 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 50 H 0.05 1.44 7.25 -51.93 -0.38 1.06 16 51 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 52 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -32.84 401.57 -11.54 -44.38 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.79 Total: 1.15 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.48 Total: -7.24 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.38 Total: -51.27 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.84 -11.54 -44.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049688247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.889 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds