Wall clock time and date at job start Wed Apr 1 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38259 * 120.00415 * 2 1 4 4 C 1.38209 * 120.00322 * 180.02562 * 3 2 1 5 5 C 1.38264 * 120.00256 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00020 * 179.97438 * 5 4 3 7 7 C 1.38215 * 119.99688 * 359.95598 * 5 4 3 8 8 C 1.50698 * 120.00116 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46883 * 84.99921 * 8 7 5 10 10 O 1.21279 * 120.00336 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99993 * 180.02562 * 9 8 7 12 12 C 1.45737 * 117.75518 * 359.97438 * 11 9 8 13 13 C 1.53058 * 109.53993 * 218.89886 * 12 11 9 14 14 C 1.52941 * 108.49342 * 306.17071 * 13 12 11 15 15 C 1.52927 * 109.79399 * 65.99960 * 14 13 12 16 16 H 1.09003 * 111.26159 * 66.65561 * 15 14 13 17 17 C 1.44184 * 117.76226 * 179.97438 * 11 9 8 18 18 H 1.09004 * 109.22410 * 27.38517 * 17 11 9 19 19 C 1.54062 * 111.76595 * 266.48722 * 17 11 9 20 20 C 1.54056 * 103.74543 * 206.75068 * 19 17 11 21 21 N 1.46882 * 107.70905 * 17.12420 * 20 19 17 22 22 C 1.36937 * 125.58057 * 182.94419 * 21 20 19 23 23 H 1.07998 * 120.00092 * 180.02562 * 22 21 20 24 24 C 1.38810 * 119.99829 * 0.02562 * 22 21 20 25 25 N 1.31618 * 120.00200 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99927 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47037 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47340 * 119.99902 * 26 24 22 29 29 H 1.48507 * 109.47237 * 240.00133 * 26 24 22 30 30 C 1.38223 * 120.00148 * 180.21073 * 2 1 3 31 31 H 1.09002 * 109.47344 * 89.99999 * 1 2 3 32 32 H 1.09006 * 109.47101 * 209.99972 * 1 2 3 33 33 H 1.08999 * 109.47467 * 329.99836 * 1 2 3 34 34 H 1.08003 * 119.99639 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.00327 * 179.97438 * 4 3 2 36 36 H 1.08999 * 109.47453 * 269.97502 * 6 5 4 37 37 H 1.08999 * 109.47327 * 29.97834 * 6 5 4 38 38 H 1.09005 * 109.47031 * 149.97868 * 6 5 4 39 39 H 1.09000 * 109.46751 * 325.00015 * 8 7 5 40 40 H 1.08997 * 109.47077 * 204.99877 * 8 7 5 41 41 H 1.09002 * 109.45940 * 338.91945 * 12 11 9 42 42 H 1.09000 * 109.45877 * 98.88393 * 12 11 9 43 43 H 1.09003 * 109.62836 * 65.88774 * 13 12 11 44 44 H 1.08998 * 109.63090 * 186.48164 * 13 12 11 45 45 H 1.08998 * 109.41502 * 305.90962 * 14 13 12 46 46 H 1.09000 * 109.37498 * 186.07003 * 14 13 12 47 47 H 1.08999 * 110.56885 * 325.31225 * 19 17 11 48 48 H 1.09004 * 110.56966 * 88.18285 * 19 17 11 49 49 H 1.09002 * 109.80653 * 136.67635 * 20 19 17 50 50 H 1.09000 * 109.80742 * 257.50792 * 20 19 17 51 51 H 0.97006 * 119.99710 * 180.02562 * 25 24 22 52 52 H 1.07999 * 119.99643 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 3.5806 -1.1971 -0.0012 8 6 4.3341 -2.5022 -0.0018 9 6 4.6934 -2.8753 1.4134 10 8 4.3692 -2.1529 2.3320 11 7 5.3751 -4.0119 1.6582 12 6 5.7394 -4.8438 0.5183 13 6 5.5801 -6.3199 0.8901 14 6 6.3803 -6.5881 2.1655 15 6 5.7622 -5.8215 3.3355 16 1 4.7727 -6.2067 3.5818 17 6 5.6940 -4.3216 3.0298 18 1 4.9490 -3.8670 3.6829 19 6 7.0920 -3.8063 3.4217 20 6 7.5286 -4.7567 4.5528 21 7 6.6695 -5.9465 4.4932 22 6 6.7049 -6.9994 5.3681 23 1 6.0292 -7.8320 5.2387 24 6 7.6093 -6.9967 6.4211 25 7 8.4331 -5.9823 6.5785 26 14 7.6581 -8.4333 7.6141 27 1 6.6384 -9.4386 7.2203 28 1 9.0057 -9.0564 7.5838 29 1 7.3684 -7.9468 8.9870 30 6 2.1981 -1.1970 -0.0044 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1326 -0.0010 36 1 6.1413 0.0000 -1.0307 37 1 6.1424 0.8899 0.5108 38 1 6.1424 -0.8901 0.5107 39 1 5.2444 -2.3959 -0.5919 40 1 3.7088 -3.2824 -0.4357 41 1 5.0894 -4.6094 -0.3247 42 1 6.7758 -4.6486 0.2429 43 1 4.5273 -6.5420 1.0645 44 1 5.9600 -6.9443 0.0815 45 1 7.4104 -6.2616 2.0224 46 1 6.3657 -7.6559 2.3839 47 1 7.7768 -3.8767 2.5766 48 1 7.0340 -2.7801 3.7846 49 1 8.5701 -5.0454 4.4112 50 1 7.4102 -4.2622 5.5170 51 1 9.0653 -5.9806 7.3143 52 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049688247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:28 Heat of formation + Delta-G solvation = -9.723452 kcal Electronic energy + Delta-G solvation = -30804.826344 eV Core-core repulsion = 26961.439886 eV Total energy + Delta-G solvation = -3843.386458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.89097 -40.53435 -39.19982 -36.85624 -35.13072 -34.27807 -33.87531 -33.21410 -31.01397 -30.11439 -30.03112 -28.70114 -26.37322 -25.80743 -25.54263 -23.43439 -23.10623 -22.21594 -21.76800 -20.57514 -19.40307 -18.76429 -18.36174 -17.11482 -16.97633 -16.81232 -16.60394 -16.08620 -15.99339 -15.65970 -15.17328 -15.10927 -14.98282 -14.62730 -14.33118 -14.11245 -14.03479 -13.93144 -13.86035 -13.65454 -13.52590 -13.43447 -13.11024 -12.90291 -12.82003 -12.72851 -12.66926 -12.34643 -12.32306 -12.27944 -12.01351 -11.93415 -11.79525 -11.73826 -11.60679 -11.54651 -11.18190 -10.78538 -10.72734 -9.64037 -9.57827 -9.22164 -8.92496 -7.85592 -5.22426 0.44542 0.53008 1.44327 1.45872 1.55919 1.65470 2.01952 2.48646 2.84828 3.32064 3.52329 3.62874 3.74446 3.85190 3.91097 3.99884 4.03817 4.04852 4.13694 4.16498 4.19958 4.33558 4.34221 4.38831 4.53445 4.59477 4.60177 4.65955 4.67630 4.72497 4.80582 4.82720 4.85959 4.86432 4.90093 4.93794 4.97272 5.07611 5.14454 5.21157 5.27180 5.37310 5.40381 5.41381 5.54895 5.57112 5.62620 5.71152 5.71852 5.74180 5.77523 6.17393 6.19272 6.45593 7.07430 7.24381 7.74465 8.38816 9.24573 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002570 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.771024 B =10890.827740 C =11019.483004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.078 4.078 8 C -0.093 4.093 9 C 0.505 3.495 10 O -0.579 6.579 11 N -0.588 5.588 12 C 0.100 3.900 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.156 3.844 16 H 0.045 0.955 17 C 0.156 3.844 18 H 0.056 0.944 19 C -0.132 4.132 20 C 0.193 3.807 21 N -0.617 5.617 22 C -0.234 4.234 23 H 0.084 0.916 24 C -0.068 4.068 25 N -0.953 5.953 26 Si 0.979 3.021 27 H -0.263 1.263 28 H -0.291 1.291 29 H -0.295 1.295 30 C -0.120 4.120 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.056 0.944 49 H 0.009 0.991 50 H 0.008 0.992 51 H 0.246 0.754 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 9.537 -23.152 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.092 4.092 6 C -0.170 4.170 7 C -0.079 4.079 8 C -0.132 4.132 9 C 0.294 3.706 10 O -0.458 6.458 11 N -0.320 5.320 12 C -0.021 4.021 13 C -0.160 4.160 14 C -0.160 4.160 15 C 0.049 3.951 16 H 0.063 0.937 17 C 0.050 3.950 18 H 0.075 0.925 19 C -0.172 4.172 20 C 0.067 3.933 21 N -0.341 5.341 22 C -0.363 4.363 23 H 0.102 0.898 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.807 3.193 27 H -0.188 1.188 28 H -0.218 1.218 29 H -0.223 1.223 30 C -0.138 4.138 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.028 0.972 50 H 0.026 0.974 51 H 0.055 0.945 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.158 9.800 -22.478 26.940 hybrid contribution 0.579 -0.596 1.757 1.944 sum -10.579 9.204 -20.720 25.019 Atomic orbital electron populations 1.20792 0.89667 1.03124 1.03082 1.20195 0.97368 0.93063 1.00045 1.21274 0.94280 0.98246 1.00824 1.21240 0.94685 0.97851 1.01040 1.19976 0.96727 0.93014 0.99498 1.20813 0.90668 1.02463 1.03035 1.19378 0.93753 0.93877 1.00847 1.20812 1.03424 0.96413 0.92517 1.21336 0.76711 0.80230 0.92279 1.90709 1.55076 1.51953 1.48078 1.47148 1.55504 1.23045 1.06268 1.21930 1.02581 0.90182 0.87398 1.21818 1.00841 0.95986 0.97335 1.21891 0.99295 0.99758 0.95038 1.21120 0.93109 0.92600 0.88280 0.93655 1.20520 0.95918 0.95513 0.83095 0.92534 1.22753 0.96967 0.98535 0.98930 1.20697 0.92700 0.85983 0.93911 1.44768 1.39877 1.19847 1.29655 1.19432 1.15570 0.97034 1.04228 0.89790 1.25670 0.98656 1.00837 1.00906 1.70213 1.24897 1.32232 1.32850 0.85000 0.77380 0.78654 0.78234 1.18763 1.21797 1.22271 1.21106 0.93476 0.98433 1.00774 0.89886 0.91598 0.90978 0.84482 0.84786 0.88934 0.91565 0.92955 0.85351 0.84999 0.85818 0.90531 0.91136 0.87574 0.93285 0.93141 0.90594 0.92474 0.97236 0.97359 0.94481 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.23 0.71 -0.87 16 2 C -0.11 -2.15 5.88 -19.87 -0.12 -2.27 16 3 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 4 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 5 C -0.09 -2.07 5.88 -19.87 -0.12 -2.19 16 6 C -0.11 -2.18 9.22 71.23 0.66 -1.52 16 7 C -0.08 -1.75 4.37 -19.87 -0.09 -1.84 16 8 C -0.09 -1.69 3.48 29.10 0.10 -1.58 16 9 C 0.50 14.35 6.80 87.66 0.60 14.95 16 10 O -0.58 -22.55 15.32 -3.03 -0.05 -22.60 16 11 N -0.59 -16.45 2.80 -802.48 -2.25 -18.70 16 12 C 0.10 1.83 6.06 86.54 0.52 2.35 16 13 C -0.12 -2.51 6.10 30.59 0.19 -2.32 16 14 C -0.12 -3.95 5.31 30.55 0.16 -3.78 16 15 C 0.16 6.39 3.29 44.83 0.15 6.54 16 16 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 17 C 0.16 5.95 2.72 45.86 0.12 6.07 16 18 H 0.06 2.54 7.10 -2.38 -0.02 2.52 16 19 C -0.13 -5.45 6.45 31.31 0.20 -5.25 16 20 C 0.19 10.07 5.39 86.66 0.47 10.54 16 21 N -0.62 -32.20 2.94 -672.09 -1.97 -34.17 16 22 C -0.23 -13.21 10.27 84.03 0.86 -12.35 16 23 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 24 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 25 N -0.95 -58.82 10.29 21.65 0.22 -58.60 16 26 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 30 C -0.12 -2.59 9.34 22.27 0.21 -2.39 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.94 8.09 -2.38 -0.02 0.92 16 33 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 38 H 0.05 1.15 6.16 -2.38 -0.01 1.14 16 39 H 0.13 1.67 6.88 -2.39 -0.02 1.65 16 40 H 0.13 1.56 7.23 -2.39 -0.02 1.54 16 41 H 0.12 1.23 5.81 -2.39 -0.01 1.22 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 48 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 49 H 0.01 0.54 7.60 -2.39 -0.02 0.52 16 50 H 0.01 0.49 7.25 -2.39 -0.02 0.47 16 51 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 52 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -77.49 401.57 4.41 -73.08 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.89 Total: 16.63 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.53 Total: -4.22 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.00 Total: -111.47 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -77.49 4.41 -73.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049688247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.361 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds