Wall clock time and date at job start Wed Apr 1 2020 01:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 120.00285 * 2 1 4 4 C 1.38213 * 120.00268 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00078 * 179.97438 * 5 4 3 7 7 C 1.38217 * 120.00028 * 359.97438 * 5 4 3 8 8 C 1.50705 * 119.99736 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47003 * 84.99991 * 8 7 5 10 10 O 1.21282 * 120.00365 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.47851 * 122.22583 * 359.97438 * 11 9 8 13 13 C 1.52715 * 111.06545 * 127.50093 * 12 11 9 14 14 C 1.53864 * 111.52415 * 48.52125 * 13 12 11 15 15 C 1.51084 * 107.34276 * 303.08155 * 14 13 12 16 16 H 1.09006 * 108.72912 * 309.16521 * 15 14 13 17 17 C 1.45724 * 122.22871 * 179.97438 * 11 9 8 18 18 H 1.08999 * 111.07584 * 119.49374 * 17 11 9 19 19 C 1.53429 * 116.37034 * 350.11652 * 17 11 9 20 20 C 1.55410 * 101.57537 * 207.06598 * 19 17 11 21 21 N 1.45021 * 119.19416 * 183.89891 * 15 14 13 22 22 C 1.36945 * 126.56010 * 28.78121 * 21 15 14 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 15 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 15 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 C 1.38214 * 120.00071 * 180.28398 * 2 1 3 31 31 H 1.09000 * 109.47027 * 89.99275 * 1 2 3 32 32 H 1.08999 * 109.47003 * 209.99569 * 1 2 3 33 33 H 1.09001 * 109.46857 * 329.99454 * 1 2 3 34 34 H 1.07997 * 119.99578 * 0.02562 * 3 2 1 35 35 H 1.08001 * 120.00285 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.46643 * 270.02367 * 6 5 4 37 37 H 1.09004 * 109.47058 * 30.01836 * 6 5 4 38 38 H 1.08990 * 109.47509 * 150.01983 * 6 5 4 39 39 H 1.08996 * 109.46964 * 325.00140 * 8 7 5 40 40 H 1.08998 * 109.46782 * 204.99916 * 8 7 5 41 41 H 1.09004 * 109.15930 * 7.09047 * 12 11 9 42 42 H 1.09005 * 109.11400 * 247.87861 * 12 11 9 43 43 H 1.09007 * 109.06745 * 288.00140 * 13 12 11 44 44 H 1.08994 * 109.06966 * 169.05896 * 13 12 11 45 45 H 1.09000 * 109.88605 * 183.61540 * 14 13 12 46 46 H 1.09004 * 109.94471 * 62.57069 * 14 13 12 47 47 H 1.09000 * 110.99013 * 325.38412 * 19 17 11 48 48 H 1.09004 * 110.98786 * 89.15424 * 19 17 11 49 49 H 1.09003 * 110.06123 * 263.52557 * 20 19 17 50 50 H 1.09003 * 109.83447 * 142.30389 * 20 19 17 51 51 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 52 52 H 1.07999 * 119.99737 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 3.5806 -1.1970 -0.0016 8 6 4.3342 -2.5022 -0.0034 9 6 4.6942 -2.8762 1.4114 10 8 4.3712 -2.1539 2.3306 11 7 5.3752 -4.0135 1.6552 12 6 5.7929 -4.9299 0.5727 13 6 7.2871 -5.2338 0.6568 14 6 7.7031 -5.6302 2.0841 15 6 7.3022 -4.4982 3.0009 16 1 7.6846 -3.5634 2.5907 17 6 5.7488 -4.4217 3.0033 18 1 5.3036 -5.3832 3.2592 19 6 5.5372 -3.3836 4.1130 20 6 6.6155 -3.8092 5.1480 21 7 7.6537 -4.5676 4.4061 22 6 8.7331 -5.2148 4.9460 23 1 9.4230 -5.7423 4.3040 24 6 8.9405 -5.1927 6.3183 25 7 8.0994 -4.5502 7.1008 26 14 10.4125 -6.0760 7.0547 27 1 10.4075 -5.9017 8.5294 28 1 10.3370 -7.5223 6.7265 29 1 11.6636 -5.5058 6.4936 30 6 2.1981 -1.1969 -0.0059 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6584 2.1326 0.0004 35 1 4.1206 2.1326 -0.0010 36 1 6.1412 0.0007 -1.0308 37 1 6.1425 0.8895 0.5115 38 1 6.1424 -0.8904 0.5100 39 1 5.2441 -2.3955 -0.5937 40 1 3.7087 -3.2822 -0.4374 41 1 5.5753 -4.4684 -0.3905 42 1 5.2330 -5.8613 0.6577 43 1 7.8480 -4.3490 0.3552 44 1 7.5229 -6.0522 -0.0233 45 1 8.7821 -5.7786 2.1281 46 1 7.1909 -6.5458 2.3799 47 1 5.7210 -2.3746 3.7440 48 1 4.5369 -3.4652 4.5384 49 1 6.1686 -4.4420 5.9148 50 1 7.0578 -2.9246 5.6064 51 1 8.2442 -4.5351 8.0598 52 1 1.6581 -2.1322 -0.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049688249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:42 Heat of formation + Delta-G solvation = 15.362477 kcal Electronic energy + Delta-G solvation = -31039.576457 eV Core-core repulsion = 27197.277807 eV Total energy + Delta-G solvation = -3842.298650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.55073 -39.50597 -37.62883 -35.39587 -34.25588 -32.61702 -32.54433 -31.94245 -29.35732 -29.17759 -28.29331 -27.62340 -24.90649 -24.47068 -24.26774 -22.28502 -21.48337 -21.07721 -20.13216 -19.59740 -18.60021 -16.84264 -16.15483 -16.08550 -15.98318 -15.59329 -15.03805 -14.79562 -14.59944 -14.24023 -14.12480 -13.92778 -13.56423 -13.49597 -13.31491 -13.05313 -13.03148 -12.77992 -12.66505 -12.40528 -12.25326 -12.00026 -11.90411 -11.81836 -11.54285 -11.52529 -11.14449 -10.99670 -10.92965 -10.82284 -10.68550 -10.50252 -10.42506 -10.09697 -9.96077 -9.81229 -9.58687 -9.05032 -8.73041 -8.55291 -8.38002 -8.17481 -6.80077 -5.67483 -3.01793 1.30451 1.38017 2.88462 3.19374 3.41746 3.45915 3.47588 3.71851 4.51071 4.55823 4.67462 4.72146 4.81356 4.89565 4.95354 5.06926 5.11812 5.16406 5.28668 5.33171 5.38943 5.39733 5.44517 5.46354 5.49992 5.57734 5.62467 5.66016 5.67915 5.70759 5.79137 5.88901 5.89784 6.01596 6.07350 6.11384 6.19642 6.28436 6.31530 6.41048 6.41626 6.54155 6.58845 6.64012 6.74246 6.82481 6.93310 7.00944 7.22337 7.60751 7.68455 7.76421 7.87153 8.27780 8.50200 9.21785 9.85834 10.54464 11.44489 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002785 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.473743 B =10050.865444 C =10558.293420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.071 4.071 6 C -0.117 4.117 7 C -0.058 4.058 8 C -0.104 4.104 9 C 0.517 3.483 10 O -0.520 6.520 11 N -0.603 5.603 12 C 0.110 3.890 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.016 0.984 17 C 0.116 3.884 18 H 0.077 0.923 19 C -0.128 4.128 20 C 0.173 3.827 21 N -0.592 5.592 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.286 1.286 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.039 0.961 51 H 0.253 0.747 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 5.492 -20.104 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.071 4.071 6 C -0.173 4.173 7 C -0.058 4.058 8 C -0.144 4.144 9 C 0.304 3.696 10 O -0.396 6.396 11 N -0.336 5.336 12 C -0.013 4.013 13 C -0.168 4.168 14 C -0.154 4.154 15 C 0.050 3.950 16 H 0.033 0.967 17 C 0.012 3.988 18 H 0.095 0.905 19 C -0.166 4.166 20 C 0.048 3.952 21 N -0.317 5.317 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.212 1.212 29 H -0.212 1.212 30 C -0.122 4.122 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.057 0.943 51 H 0.063 0.937 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.262 5.872 -19.360 23.154 hybrid contribution 0.845 -0.600 0.460 1.134 sum -10.417 5.272 -18.899 22.215 Atomic orbital electron populations 1.20755 0.91404 1.02725 1.01939 1.19804 0.95862 0.93115 1.00690 1.20948 0.94141 0.97315 1.01327 1.20948 0.94131 0.97320 1.01076 1.19682 0.95913 0.92546 0.99009 1.20821 0.91367 1.03393 1.01752 1.19125 0.93266 0.93213 1.00240 1.20752 1.01614 0.96090 0.95937 1.20301 0.78052 0.80558 0.90691 1.90734 1.52951 1.50415 1.45499 1.48050 1.55389 1.22106 1.08095 1.21706 0.95955 0.93707 0.89911 1.21897 0.94969 1.01636 0.98314 1.21426 1.01628 0.99289 0.93082 1.20759 0.91458 0.95547 0.87252 0.96654 1.22415 0.97114 0.98106 0.81158 0.90474 1.22934 0.99601 0.98759 0.95341 1.21735 0.86521 0.95380 0.91546 1.44094 1.27110 1.60934 0.99568 1.18933 1.00264 1.25785 0.90509 0.90453 1.24804 0.98855 1.00615 0.96090 1.69944 1.37058 1.46129 1.03554 0.86233 0.82223 0.79294 0.78198 1.21627 1.21208 1.21231 1.20804 0.93234 0.97516 1.00636 0.91475 0.91646 0.91701 0.86394 0.86217 0.91336 0.91412 0.91424 0.88206 0.88496 0.90429 0.91576 0.91851 0.90946 0.91515 0.91808 0.89968 0.92250 0.92701 0.94315 0.93685 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.09 -1.05 5.88 -104.62 -0.62 -1.67 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 4 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 5 C -0.07 -0.89 5.88 -104.62 -0.62 -1.51 16 6 C -0.12 -1.32 9.22 36.00 0.33 -0.99 16 7 C -0.06 -0.73 4.37 -104.62 -0.46 -1.19 16 8 C -0.10 -1.17 3.57 -29.03 -0.10 -1.27 16 9 C 0.52 7.97 6.91 -10.98 -0.08 7.90 16 10 O -0.52 -10.10 12.87 5.56 0.07 -10.02 16 11 N -0.60 -9.17 2.91 -163.97 -0.48 -9.64 16 12 C 0.11 1.23 6.32 -3.45 -0.02 1.21 16 13 C -0.13 -1.56 5.92 -26.43 -0.16 -1.72 16 14 C -0.12 -1.94 5.45 -27.24 -0.15 -2.09 16 15 C 0.16 3.31 2.58 -68.34 -0.18 3.13 16 16 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 17 C 0.12 2.21 3.33 -66.78 -0.22 1.99 16 18 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 19 C -0.13 -2.77 5.01 -25.23 -0.13 -2.89 16 20 C 0.17 4.42 5.46 -1.69 -0.01 4.41 16 21 N -0.59 -15.26 3.35 -163.25 -0.55 -15.81 16 22 C -0.23 -6.28 9.94 -15.06 -0.15 -6.43 16 23 H 0.08 2.04 7.31 -52.49 -0.38 1.66 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 25 N -0.92 -27.47 10.46 55.49 0.58 -26.89 16 26 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 C -0.10 -1.24 9.34 -39.59 -0.37 -1.61 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.07 0.87 6.16 -51.93 -0.32 0.55 16 39 H 0.10 0.94 6.61 -51.93 -0.34 0.60 16 40 H 0.10 0.85 7.92 -51.93 -0.41 0.44 16 41 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 46 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 47 H 0.08 1.87 6.21 -51.93 -0.32 1.55 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.05 1.53 7.21 -51.93 -0.37 1.16 16 50 H 0.04 1.09 7.79 -51.93 -0.40 0.69 16 51 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 52 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -33.30 397.52 -11.57 -44.87 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.74 Total: 1.34 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.42 Total: -7.00 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.44 Total: -52.34 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.30 -11.57 -44.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049688249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.232 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds