Wall clock time and date at job start Wed Apr 1 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 120.00285 * 2 1 4 4 C 1.38213 * 120.00268 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00078 * 179.97438 * 5 4 3 7 7 C 1.38217 * 120.00028 * 359.97438 * 5 4 3 8 8 C 1.50705 * 119.99736 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47003 * 84.99991 * 8 7 5 10 10 O 1.21282 * 120.00365 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.47851 * 122.22583 * 359.97438 * 11 9 8 13 13 C 1.52715 * 111.06545 * 127.50093 * 12 11 9 14 14 C 1.53864 * 111.52415 * 48.52125 * 13 12 11 15 15 C 1.51084 * 107.34276 * 303.08155 * 14 13 12 16 16 H 1.09006 * 108.72912 * 309.16521 * 15 14 13 17 17 C 1.45724 * 122.22871 * 179.97438 * 11 9 8 18 18 H 1.08999 * 111.07584 * 119.49374 * 17 11 9 19 19 C 1.53429 * 116.37034 * 350.11652 * 17 11 9 20 20 C 1.55410 * 101.57537 * 207.06598 * 19 17 11 21 21 N 1.45021 * 119.19416 * 183.89891 * 15 14 13 22 22 C 1.36945 * 126.56010 * 28.78121 * 21 15 14 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 15 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 15 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 C 1.38214 * 120.00071 * 180.28398 * 2 1 3 31 31 H 1.09000 * 109.47027 * 89.99275 * 1 2 3 32 32 H 1.08999 * 109.47003 * 209.99569 * 1 2 3 33 33 H 1.09001 * 109.46857 * 329.99454 * 1 2 3 34 34 H 1.07997 * 119.99578 * 0.02562 * 3 2 1 35 35 H 1.08001 * 120.00285 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.46643 * 270.02367 * 6 5 4 37 37 H 1.09004 * 109.47058 * 30.01836 * 6 5 4 38 38 H 1.08990 * 109.47509 * 150.01983 * 6 5 4 39 39 H 1.08996 * 109.46964 * 325.00140 * 8 7 5 40 40 H 1.08998 * 109.46782 * 204.99916 * 8 7 5 41 41 H 1.09004 * 109.15930 * 7.09047 * 12 11 9 42 42 H 1.09005 * 109.11400 * 247.87861 * 12 11 9 43 43 H 1.09007 * 109.06745 * 288.00140 * 13 12 11 44 44 H 1.08994 * 109.06966 * 169.05896 * 13 12 11 45 45 H 1.09000 * 109.88605 * 183.61540 * 14 13 12 46 46 H 1.09004 * 109.94471 * 62.57069 * 14 13 12 47 47 H 1.09000 * 110.99013 * 325.38412 * 19 17 11 48 48 H 1.09004 * 110.98786 * 89.15424 * 19 17 11 49 49 H 1.09003 * 110.06123 * 263.52557 * 20 19 17 50 50 H 1.09003 * 109.83447 * 142.30389 * 20 19 17 51 51 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 52 52 H 1.07999 * 119.99737 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 3.5806 -1.1970 -0.0016 8 6 4.3342 -2.5022 -0.0034 9 6 4.6942 -2.8762 1.4114 10 8 4.3712 -2.1539 2.3306 11 7 5.3752 -4.0135 1.6552 12 6 5.7929 -4.9299 0.5727 13 6 7.2871 -5.2338 0.6568 14 6 7.7031 -5.6302 2.0841 15 6 7.3022 -4.4982 3.0009 16 1 7.6846 -3.5634 2.5907 17 6 5.7488 -4.4217 3.0033 18 1 5.3036 -5.3832 3.2592 19 6 5.5372 -3.3836 4.1130 20 6 6.6155 -3.8092 5.1480 21 7 7.6537 -4.5676 4.4061 22 6 8.7331 -5.2148 4.9460 23 1 9.4230 -5.7423 4.3040 24 6 8.9405 -5.1927 6.3183 25 7 8.0994 -4.5502 7.1008 26 14 10.4125 -6.0760 7.0547 27 1 10.4075 -5.9017 8.5294 28 1 10.3370 -7.5223 6.7265 29 1 11.6636 -5.5058 6.4936 30 6 2.1981 -1.1969 -0.0059 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6584 2.1326 0.0004 35 1 4.1206 2.1326 -0.0010 36 1 6.1412 0.0007 -1.0308 37 1 6.1425 0.8895 0.5115 38 1 6.1424 -0.8904 0.5100 39 1 5.2441 -2.3955 -0.5937 40 1 3.7087 -3.2822 -0.4374 41 1 5.5753 -4.4684 -0.3905 42 1 5.2330 -5.8613 0.6577 43 1 7.8480 -4.3490 0.3552 44 1 7.5229 -6.0522 -0.0233 45 1 8.7821 -5.7786 2.1281 46 1 7.1909 -6.5458 2.3799 47 1 5.7210 -2.3746 3.7440 48 1 4.5369 -3.4652 4.5384 49 1 6.1686 -4.4420 5.9148 50 1 7.0578 -2.9246 5.6064 51 1 8.2442 -4.5351 8.0598 52 1 1.6581 -2.1322 -0.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049688249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:41 Heat of formation + Delta-G solvation = -2.672636 kcal Electronic energy + Delta-G solvation = -31040.358518 eV Core-core repulsion = 27197.277807 eV Total energy + Delta-G solvation = -3843.080712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.78809 -40.52694 -39.02912 -36.89606 -35.12652 -34.28367 -33.83472 -33.18774 -30.95144 -30.12017 -29.75531 -28.73120 -26.38646 -25.85127 -25.49198 -23.25551 -22.82270 -22.45312 -21.57971 -21.02075 -19.77960 -18.61489 -17.36979 -17.23298 -17.07830 -16.80740 -16.55624 -16.14599 -15.79882 -15.66936 -15.35675 -15.13610 -14.99722 -14.62225 -14.31625 -14.16845 -14.03884 -13.93604 -13.75846 -13.59522 -13.50584 -13.38104 -13.15758 -12.89029 -12.86263 -12.72550 -12.68118 -12.33602 -12.24448 -12.13362 -11.98426 -11.79901 -11.79402 -11.72051 -11.68859 -11.54548 -11.40378 -10.76523 -10.35659 -9.62797 -9.50267 -9.22318 -8.91525 -7.84665 -5.21832 0.44564 0.52841 1.44527 1.48620 1.54793 1.72684 2.03461 2.50111 2.84600 3.33759 3.38473 3.65219 3.75074 3.89167 3.96596 4.01583 4.06441 4.11506 4.14930 4.16312 4.27793 4.33283 4.36338 4.38282 4.53593 4.56884 4.60159 4.63542 4.70565 4.71818 4.78240 4.83317 4.86127 4.87999 4.91741 4.94104 5.04893 5.11800 5.13707 5.17605 5.26527 5.30160 5.39615 5.45493 5.48174 5.56881 5.58543 5.62938 5.72370 5.73857 5.77517 6.17159 6.19249 6.59505 7.04210 7.31108 7.74951 8.45470 9.27135 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002785 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.473743 B =10050.865444 C =10558.293420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.128 4.128 4 C -0.131 4.131 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.076 4.076 8 C -0.092 4.092 9 C 0.512 3.488 10 O -0.569 6.569 11 N -0.603 5.603 12 C 0.103 3.897 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.153 3.847 16 H -0.002 1.002 17 C 0.133 3.867 18 H 0.077 0.923 19 C -0.110 4.110 20 C 0.184 3.816 21 N -0.612 5.612 22 C -0.233 4.233 23 H 0.090 0.910 24 C -0.071 4.071 25 N -0.956 5.956 26 Si 0.980 3.020 27 H -0.298 1.298 28 H -0.272 1.272 29 H -0.277 1.277 30 C -0.118 4.118 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.023 0.977 50 H -0.004 1.004 51 H 0.246 0.754 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 4.253 -23.860 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.146 4.146 4 C -0.149 4.149 5 C -0.092 4.092 6 C -0.169 4.169 7 C -0.076 4.076 8 C -0.131 4.131 9 C 0.302 3.698 10 O -0.448 6.448 11 N -0.336 5.336 12 C -0.018 4.018 13 C -0.159 4.159 14 C -0.151 4.151 15 C 0.045 3.955 16 H 0.015 0.985 17 C 0.027 3.973 18 H 0.095 0.905 19 C -0.148 4.148 20 C 0.059 3.941 21 N -0.337 5.337 22 C -0.362 4.362 23 H 0.107 0.893 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.808 3.192 27 H -0.224 1.224 28 H -0.197 1.197 29 H -0.203 1.203 30 C -0.136 4.136 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.042 0.958 50 H 0.015 0.985 51 H 0.055 0.945 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.686 4.607 -23.200 26.382 hybrid contribution 0.953 -0.127 1.613 1.877 sum -10.733 4.480 -21.587 24.521 Atomic orbital electron populations 1.20791 0.89572 1.03155 1.03090 1.20197 0.97404 0.93010 0.99962 1.21265 0.94172 0.98315 1.00861 1.21226 0.94764 0.97776 1.01109 1.19945 0.96502 0.93145 0.99648 1.20794 0.90960 1.02251 1.02904 1.19355 0.93785 0.93751 1.00727 1.20760 1.03096 0.96435 0.92820 1.21102 0.76924 0.79628 0.92130 1.90714 1.54825 1.51824 1.47444 1.48148 1.55315 1.22936 1.07188 1.22103 0.95368 0.94137 0.90154 1.21885 0.95607 1.03097 0.95270 1.21416 1.00965 0.97454 0.95216 1.20951 0.92765 0.96530 0.85221 0.98472 1.21959 0.95681 0.96827 0.82826 0.90533 1.22632 0.97808 0.98929 0.95468 1.21413 0.87479 0.93085 0.92153 1.44361 1.26815 1.60583 1.01934 1.19383 1.00832 1.25036 0.90930 0.89266 1.25724 1.01939 1.01972 0.96720 1.70189 1.39096 1.48018 1.03223 0.85126 0.78858 0.78614 0.76593 1.22426 1.19744 1.20316 1.21087 0.93355 0.98439 1.00726 0.89869 0.91501 0.91007 0.84487 0.84975 0.88957 0.91821 0.93248 0.85890 0.85187 0.86134 0.89620 0.91777 0.87031 0.92659 0.91872 0.91194 0.92299 0.95838 0.98527 0.94507 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.11 -2.19 5.88 -19.86 -0.12 -2.31 16 3 C -0.13 -2.65 9.70 22.27 0.22 -2.44 16 4 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 5 C -0.09 -2.22 5.88 -19.87 -0.12 -2.33 16 6 C -0.11 -2.44 9.22 71.24 0.66 -1.78 16 7 C -0.08 -1.77 4.37 -19.86 -0.09 -1.85 16 8 C -0.09 -1.77 3.57 29.10 0.10 -1.66 16 9 C 0.51 15.01 6.91 87.66 0.61 15.62 16 10 O -0.57 -22.30 12.87 -3.04 -0.04 -22.34 16 11 N -0.60 -17.08 2.91 -791.07 -2.30 -19.38 16 12 C 0.10 1.83 6.32 86.03 0.54 2.37 16 13 C -0.12 -2.40 5.92 30.79 0.18 -2.22 16 14 C -0.11 -3.57 5.45 30.26 0.16 -3.41 16 15 C 0.15 6.42 2.58 45.51 0.12 6.54 16 16 H 0.00 -0.10 8.04 -2.38 -0.02 -0.12 16 17 C 0.13 5.05 3.33 46.15 0.15 5.20 16 18 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 19 C -0.11 -5.00 5.01 31.57 0.16 -4.84 16 20 C 0.18 10.10 5.46 86.83 0.47 10.57 16 21 N -0.61 -32.79 3.35 -670.40 -2.25 -35.04 16 22 C -0.23 -13.22 9.94 84.03 0.84 -12.38 16 23 H 0.09 4.72 7.31 -2.91 -0.02 4.70 16 24 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 25 N -0.96 -60.11 10.46 21.65 0.23 -59.88 16 26 Si 0.98 46.58 29.55 68.60 2.03 48.60 16 27 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 28 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 29 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 30 C -0.12 -2.61 9.34 22.27 0.21 -2.40 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 33 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 34 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.38 8.09 -2.38 -0.02 1.36 16 38 H 0.05 1.24 6.16 -2.39 -0.01 1.22 16 39 H 0.12 1.80 6.61 -2.39 -0.02 1.79 16 40 H 0.13 1.64 7.92 -2.39 -0.02 1.62 16 41 H 0.12 1.19 6.18 -2.39 -0.01 1.18 16 42 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.87 7.70 -2.39 -0.02 1.85 16 46 H 0.06 2.02 8.12 -2.38 -0.02 2.00 16 47 H 0.07 3.37 6.21 -2.39 -0.01 3.36 16 48 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.02 1.41 7.21 -2.39 -0.02 1.39 16 50 H 0.00 -0.22 7.79 -2.39 -0.02 -0.24 16 51 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 52 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -78.68 397.52 4.05 -74.63 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.89 Total: 18.00 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.49 Total: -4.60 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.32 Total: -114.30 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.04 Total: -22.34 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -78.68 4.05 -74.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049688249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.958 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds