Wall clock time and date at job start Wed Apr 1 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38234 * 119.99835 * 2 1 4 4 C 1.38234 * 119.99882 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00069 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00147 * 0.02562 * 4 3 2 7 7 C 1.38241 * 119.99337 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.99384 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47096 * 90.00076 * 8 7 6 10 10 O 1.21280 * 120.00031 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99940 * 179.97438 * 9 8 7 12 12 C 1.47859 * 122.22931 * 359.97438 * 11 9 8 13 13 C 1.52718 * 111.05837 * 232.50985 * 12 11 9 14 14 C 1.53869 * 111.52255 * 311.46149 * 13 12 11 15 15 C 1.51085 * 107.34691 * 56.93103 * 14 13 12 16 16 H 1.09001 * 108.73105 * 50.84171 * 15 14 13 17 17 C 1.45725 * 122.22919 * 180.02562 * 11 9 8 18 18 H 1.08997 * 111.64319 * 240.83025 * 17 11 9 19 19 C 1.53429 * 116.37016 * 9.87781 * 17 11 9 20 20 C 1.55472 * 101.67392 * 152.73221 * 19 17 11 21 21 N 1.45021 * 119.19701 * 176.11582 * 15 14 13 22 22 C 1.36937 * 126.56037 * 331.19945 * 21 15 14 23 23 H 1.07997 * 120.00055 * 7.68809 * 22 21 15 24 24 C 1.38813 * 119.99872 * 187.68888 * 22 21 15 25 25 N 1.31620 * 120.00100 * 8.12301 * 24 22 21 26 26 Si 1.86801 * 120.00078 * 188.12613 * 24 22 21 27 27 H 1.48496 * 109.47122 * 94.80281 * 26 24 22 28 28 H 1.48498 * 109.47044 * 214.80702 * 26 24 22 29 29 H 1.48503 * 109.46680 * 334.80214 * 26 24 22 30 30 C 1.38225 * 120.00366 * 0.25809 * 7 6 4 31 31 H 1.08998 * 109.46971 * 89.99904 * 1 2 3 32 32 H 1.09000 * 109.46820 * 210.00183 * 1 2 3 33 33 H 1.09005 * 109.47043 * 329.99634 * 1 2 3 34 34 H 1.07996 * 120.00146 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46755 * 270.01830 * 5 4 3 36 36 H 1.08999 * 109.47200 * 30.02336 * 5 4 3 37 37 H 1.09007 * 109.46874 * 150.02650 * 5 4 3 38 38 H 1.07996 * 120.00051 * 179.97438 * 6 4 3 39 39 H 1.09002 * 109.47389 * 329.99971 * 8 7 6 40 40 H 1.09000 * 109.47274 * 210.00038 * 8 7 6 41 41 H 1.09001 * 109.15641 * 352.91519 * 12 11 9 42 42 H 1.09001 * 109.16030 * 112.09933 * 12 11 9 43 43 H 1.08999 * 109.06942 * 190.93472 * 13 12 11 44 44 H 1.09001 * 109.06991 * 71.98741 * 13 12 11 45 45 H 1.09004 * 109.88202 * 297.47210 * 14 13 12 46 46 H 1.08999 * 109.88438 * 176.39074 * 14 13 12 47 47 H 1.09000 * 110.98953 * 34.63573 * 19 17 11 48 48 H 1.09003 * 110.98782 * 270.82909 * 19 17 11 49 49 H 1.09001 * 109.96170 * 218.01998 * 20 19 17 50 50 H 1.09003 * 109.99323 * 96.79437 * 20 19 17 51 51 H 0.96998 * 120.00245 * 180.02562 * 25 24 22 52 52 H 1.08001 * 120.00059 * 179.72829 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2718 0.0000 0.0005 7 6 3.5805 -1.1972 0.0005 8 6 4.3340 -2.5022 0.0000 9 6 4.5857 -2.9376 1.4206 10 8 4.1916 -2.2555 2.3427 11 7 5.2479 -4.0854 1.6663 12 6 5.7484 -4.9551 0.5803 13 6 5.2733 -6.3944 0.7668 14 6 5.5186 -6.8882 2.2033 15 6 4.8109 -5.9325 3.1352 16 1 3.7815 -5.8123 2.7977 17 6 5.5174 -4.5526 3.0201 18 1 6.5872 -4.6368 3.2109 19 6 4.8104 -3.7993 4.1544 20 6 4.7142 -4.8983 5.2499 21 7 4.8045 -6.2074 4.5591 22 6 4.8677 -7.4400 5.1523 23 1 5.0544 -8.3187 4.5528 24 6 4.6918 -7.5600 6.5240 25 7 4.3073 -6.5191 7.2317 26 14 5.0010 -9.1989 7.3654 27 1 6.3884 -9.2301 7.8938 28 1 4.0408 -9.3692 8.4853 29 1 4.8193 -10.3002 6.3859 30 6 2.1982 -1.1971 -0.0049 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1324 0.0004 35 1 4.5158 2.8173 -1.0264 36 1 3.7450 3.2617 0.5152 37 1 5.2865 2.3716 0.5149 38 1 5.3517 0.0000 0.0005 39 1 5.2862 -2.3718 -0.5142 40 1 3.7448 -3.2618 -0.5138 41 1 5.3841 -4.5790 -0.3757 42 1 6.8383 -4.9352 0.5797 43 1 5.8106 -7.0397 0.0718 44 1 4.2067 -6.4484 0.5490 45 1 6.5875 -6.8909 2.4169 46 1 5.1130 -7.8926 2.3244 47 1 3.8189 -3.4687 3.8450 48 1 5.4114 -2.9573 4.4979 49 1 3.7620 -4.8185 5.7744 50 1 5.5378 -4.7936 5.9562 51 1 4.1847 -6.6028 8.1903 52 1 1.6582 -2.1324 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049693250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:49 Heat of formation + Delta-G solvation = 12.506541 kcal Electronic energy + Delta-G solvation = -30625.805479 eV Core-core repulsion = 26783.382986 eV Total energy + Delta-G solvation = -3842.422493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -40.47169 -39.50138 -37.66832 -35.40144 -33.58888 -33.57592 -32.57594 -32.11049 -29.34694 -28.37696 -28.01976 -27.05765 -26.76084 -24.48896 -24.30279 -21.59415 -21.47501 -20.80621 -20.37118 -19.63221 -18.62999 -16.82368 -16.39078 -16.05835 -15.99941 -15.68801 -15.06210 -14.71662 -14.41871 -14.19054 -14.12579 -14.00193 -13.52317 -13.51266 -13.34761 -13.07878 -12.98032 -12.95473 -12.65842 -12.43354 -12.33054 -12.17734 -11.86897 -11.74721 -11.53822 -11.51009 -11.15567 -11.03588 -10.98235 -10.86126 -10.69414 -10.50596 -10.45489 -10.08914 -9.93670 -9.81306 -9.56935 -9.05290 -8.62490 -8.55869 -8.51011 -8.17051 -6.78133 -5.68367 -3.03036 1.31340 1.36160 2.88597 3.18533 3.41461 3.46203 3.48785 3.71581 4.51070 4.54853 4.66689 4.69646 4.71208 4.88745 5.06607 5.07346 5.17002 5.18362 5.24489 5.29159 5.39191 5.41278 5.41811 5.45189 5.46636 5.49317 5.52420 5.62149 5.68577 5.72151 5.75760 5.78879 5.89899 6.01297 6.08325 6.11310 6.13636 6.27576 6.30958 6.41426 6.49487 6.50503 6.58273 6.60409 6.73650 6.81788 6.93111 7.00374 7.22087 7.55772 7.71885 7.75394 7.86298 8.27639 8.49851 9.20871 9.85760 10.54921 11.43861 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.002666 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.497042 B =10501.542952 C =11060.583748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.053 4.053 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.521 6.521 11 N -0.602 5.602 12 C 0.111 3.889 13 C -0.130 4.130 14 C -0.115 4.115 15 C 0.159 3.841 16 H 0.016 0.984 17 C 0.116 3.884 18 H 0.078 0.922 19 C -0.127 4.127 20 C 0.171 3.829 21 N -0.591 5.591 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.916 5.916 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.109 4.109 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.036 0.964 51 H 0.252 0.748 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.221 12.498 -20.663 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.129 4.129 7 C -0.053 4.053 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.397 6.397 11 N -0.336 5.336 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.154 4.154 15 C 0.049 3.951 16 H 0.033 0.967 17 C 0.012 3.988 18 H 0.096 0.904 19 C -0.166 4.166 20 C 0.046 3.954 21 N -0.316 5.316 22 C -0.356 4.356 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.563 5.563 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.128 4.128 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.054 0.946 51 H 0.063 0.937 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.485 12.790 -19.927 23.684 hybrid contribution 0.278 -1.052 0.541 1.216 sum -0.206 11.738 -19.386 22.664 Atomic orbital electron populations 1.20780 0.91293 1.02907 1.02029 1.19828 0.95935 0.93030 0.99474 1.20838 0.93482 0.97361 1.02485 1.19812 0.93805 0.95116 0.99698 1.20768 0.99996 0.94151 1.01994 1.20791 0.99366 0.91441 1.01256 1.19241 0.93477 0.93548 0.99057 1.20738 1.01769 0.95984 0.95775 1.20323 0.78015 0.80452 0.90828 1.90733 1.50123 1.53335 1.45510 1.48010 1.56424 1.21524 1.07597 1.21704 0.99009 0.90809 0.89718 1.21900 1.01784 0.94953 0.98196 1.21415 1.00955 1.00099 0.92925 1.20725 0.95768 0.91708 0.86884 0.96652 1.22350 0.99032 0.96629 0.80835 0.90448 1.22935 1.01250 0.97528 0.94878 1.21707 1.01063 0.81311 0.91326 1.44031 1.86201 1.02757 0.98578 1.18978 1.42114 0.83832 0.90696 0.90425 1.24818 1.01451 0.97446 0.96640 1.69966 1.51522 1.28662 1.06134 0.86151 0.77553 0.83060 0.79302 1.21691 1.21798 1.20652 1.20826 0.93380 0.97589 1.00956 0.91370 0.91430 0.91645 0.86433 0.91402 0.91660 0.91561 0.86471 0.88357 0.88280 0.90398 0.91582 0.90937 0.91830 0.91849 0.91459 0.89871 0.92271 0.92724 0.94561 0.93748 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.08 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.37 9.36 -39.58 -0.37 -1.74 16 4 C -0.08 -0.94 5.88 -104.62 -0.62 -1.56 16 5 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 6 C -0.11 -1.33 9.36 -39.58 -0.37 -1.70 16 7 C -0.05 -0.66 4.37 -104.63 -0.46 -1.12 16 8 C -0.10 -1.14 4.25 -29.03 -0.12 -1.26 16 9 C 0.52 8.04 7.69 -10.99 -0.08 7.95 16 10 O -0.52 -10.22 12.86 5.56 0.07 -10.15 16 11 N -0.60 -9.20 2.91 -164.02 -0.48 -9.68 16 12 C 0.11 1.24 6.32 -3.44 -0.02 1.21 16 13 C -0.13 -1.58 5.92 -26.42 -0.16 -1.73 16 14 C -0.12 -1.95 5.42 -27.24 -0.15 -2.09 16 15 C 0.16 3.32 2.58 -68.39 -0.18 3.14 16 16 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 17 C 0.12 2.21 3.33 -66.83 -0.22 1.98 16 18 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 19 C -0.13 -2.77 5.01 -25.20 -0.13 -2.89 16 20 C 0.17 4.38 5.47 -1.74 -0.01 4.37 16 21 N -0.59 -15.30 3.35 -163.39 -0.55 -15.85 16 22 C -0.23 -6.34 9.94 -15.06 -0.15 -6.49 16 23 H 0.08 2.07 7.29 -52.49 -0.38 1.68 16 24 C -0.01 -0.19 5.45 -17.43 -0.09 -0.29 16 25 N -0.92 -27.51 10.68 55.49 0.59 -26.92 16 26 Si 0.91 22.25 29.56 -169.99 -5.03 17.22 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 C -0.11 -1.36 9.36 -39.59 -0.37 -1.73 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.10 0.85 7.96 -51.93 -0.41 0.43 16 40 H 0.10 0.91 7.70 -51.93 -0.40 0.51 16 41 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.07 8.12 -51.93 -0.42 0.64 16 46 H 0.07 1.20 7.72 -51.93 -0.40 0.80 16 47 H 0.08 1.92 6.21 -51.93 -0.32 1.59 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.05 1.56 7.29 -51.93 -0.38 1.18 16 50 H 0.04 1.00 7.84 -51.93 -0.41 0.59 16 51 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 52 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 402.46 15.07 6.06 6.06 Total: -1.00 -33.68 402.46 -11.62 -45.30 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.91 Total: 0.76 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.39 Total: -6.74 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.43 Total: -52.45 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.68 -11.62 -45.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049693250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.804 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds