Wall clock time and date at job start Wed Apr 1 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38227 * 119.99657 * 2 1 4 4 C 1.38239 * 120.00195 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00319 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99560 * 359.95205 * 4 3 2 7 7 C 1.38236 * 120.00171 * 0.02562 * 6 4 3 8 8 C 1.50698 * 120.00180 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47170 * 89.99762 * 8 7 6 10 10 O 1.21284 * 120.00063 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00177 * 180.02562 * 9 8 7 12 12 C 1.46804 * 119.57952 * 0.02562 * 11 9 8 13 13 C 1.53465 * 107.59056 * 232.05896 * 12 11 9 14 14 C 1.52740 * 108.44114 * 301.91331 * 13 12 11 15 15 C 1.53009 * 110.79924 * 63.77222 * 14 13 12 16 16 H 1.08998 * 111.38544 * 68.77067 * 15 14 13 17 17 C 1.45130 * 119.57866 * 179.72880 * 11 9 8 18 18 H 1.09007 * 109.96667 * 11.93423 * 17 11 9 19 19 C 1.54410 * 111.60801 * 248.64767 * 17 11 9 20 20 C 1.54566 * 102.44762 * 203.41780 * 19 17 11 21 21 N 1.48218 * 107.11111 * 191.93018 * 15 14 13 22 22 C 1.36930 * 125.76606 * 270.85985 * 21 15 14 23 23 H 1.07996 * 120.00259 * 353.40525 * 22 21 15 24 24 C 1.38817 * 119.99963 * 173.40679 * 22 21 15 25 25 N 1.31624 * 120.00088 * 6.41497 * 24 22 21 26 26 Si 1.86800 * 120.00242 * 186.42073 * 24 22 21 27 27 H 1.48506 * 109.47016 * 94.98287 * 26 24 22 28 28 H 1.48490 * 109.47353 * 214.98337 * 26 24 22 29 29 H 1.48503 * 109.47025 * 334.98790 * 26 24 22 30 30 C 1.38231 * 120.00079 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46273 * 90.00973 * 1 2 3 32 32 H 1.09000 * 109.47036 * 210.00323 * 1 2 3 33 33 H 1.08990 * 109.47632 * 330.00488 * 1 2 3 34 34 H 1.08003 * 120.00421 * 359.96872 * 3 2 1 35 35 H 1.09002 * 109.47137 * 269.97578 * 5 4 3 36 36 H 1.09004 * 109.47022 * 29.97846 * 5 4 3 37 37 H 1.09000 * 109.46816 * 149.98058 * 5 4 3 38 38 H 1.07999 * 120.00117 * 179.72174 * 6 4 3 39 39 H 1.08994 * 109.47580 * 209.99609 * 8 7 6 40 40 H 1.09002 * 109.47262 * 330.00476 * 8 7 6 41 41 H 1.09001 * 109.82720 * 351.57570 * 12 11 9 42 42 H 1.08998 * 109.83429 * 112.46955 * 12 11 9 43 43 H 1.08991 * 109.64692 * 61.60364 * 13 12 11 44 44 H 1.09000 * 109.64055 * 182.02139 * 13 12 11 45 45 H 1.09002 * 109.21060 * 184.11244 * 14 13 12 46 46 H 1.08998 * 109.20889 * 303.47624 * 14 13 12 47 47 H 1.09001 * 110.81108 * 321.65641 * 19 17 11 48 48 H 1.09001 * 110.81301 * 84.98197 * 19 17 11 49 49 H 1.09000 * 109.88516 * 141.08427 * 20 19 17 50 50 H 1.08996 * 109.88676 * 262.26233 * 20 19 17 51 51 H 0.96995 * 120.00079 * 179.97438 * 25 24 22 52 52 H 1.08004 * 119.99787 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3340 2.5024 0.0000 6 6 4.2717 0.0001 0.0021 7 6 3.5806 -1.1971 0.0025 8 6 4.3341 -2.5021 0.0036 9 6 4.5848 -2.9363 1.4248 10 8 4.1900 -2.2534 2.3461 11 7 5.2477 -4.0833 1.6721 12 6 5.7220 -4.9026 0.5500 13 6 5.2167 -6.3341 0.7748 14 6 5.7436 -6.8266 2.1212 15 6 5.1747 -5.9872 3.2671 16 1 4.1057 -6.1590 3.3930 17 6 5.4892 -4.4897 3.0442 18 1 4.8954 -3.8780 3.7236 19 6 6.9883 -4.4094 3.4056 20 6 7.1011 -5.4048 4.5827 21 7 5.9468 -6.3312 4.4847 22 6 5.6471 -7.3362 5.3651 23 1 4.7258 -7.8898 5.2594 24 6 6.5273 -7.6434 6.3936 25 7 7.5866 -6.8900 6.6003 26 14 6.2086 -9.1261 7.4842 27 1 6.9643 -10.2942 6.9648 28 1 6.6517 -8.8261 8.8694 29 1 4.7564 -9.4368 7.4853 30 6 2.1982 -1.1971 0.0005 31 1 -0.3632 -0.0002 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5137 34 1 1.6581 2.1325 -0.0005 35 1 4.5164 2.8161 -1.0279 36 1 3.7445 3.2624 0.5127 37 1 5.2860 2.3724 0.5145 38 1 5.3517 0.0001 -0.0021 39 1 3.7453 -3.2621 -0.5099 40 1 5.2868 -2.3721 -0.5098 41 1 5.3237 -4.5126 -0.3868 42 1 6.8115 -4.8942 0.5205 43 1 4.1269 -6.3410 0.7831 44 1 5.5811 -6.9808 -0.0234 45 1 5.4532 -7.8679 2.2609 46 1 6.8311 -6.7533 2.1293 47 1 7.6065 -4.7297 2.5669 48 1 7.2574 -3.4010 3.7200 49 1 8.0337 -5.9639 4.5073 50 1 7.0651 -4.8654 5.5291 51 1 8.2014 -7.1044 7.3192 52 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049693251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:53 Heat of formation + Delta-G solvation = 6.497434 kcal Electronic energy + Delta-G solvation = -30402.817843 eV Core-core repulsion = 26560.134775 eV Total energy + Delta-G solvation = -3842.683068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -40.50287 -39.52145 -37.83460 -35.19394 -33.62364 -33.61159 -32.37036 -32.17269 -29.34782 -28.60889 -27.93730 -27.07594 -26.79670 -24.51888 -24.25777 -22.04879 -21.50052 -20.84183 -20.10520 -19.58424 -18.06279 -17.14497 -16.85796 -16.41619 -16.03849 -15.55548 -14.87933 -14.75025 -14.55523 -14.21001 -14.15837 -13.85682 -13.59069 -13.44124 -13.38125 -13.10691 -13.00710 -12.88300 -12.69261 -12.59504 -12.30886 -12.04079 -11.93276 -11.74106 -11.58263 -11.38832 -11.14003 -11.07309 -10.99484 -10.96593 -10.76789 -10.64162 -10.47145 -10.08119 -10.05832 -9.63645 -9.58054 -9.50670 -8.64413 -8.61953 -8.59501 -8.23436 -6.84938 -5.71756 -3.04532 1.27628 1.32551 2.81231 3.18243 3.40572 3.46015 3.47987 3.68915 4.48491 4.51392 4.63133 4.67206 4.70251 4.97474 5.03176 5.10097 5.14685 5.16971 5.20706 5.29264 5.36286 5.38749 5.39461 5.43540 5.45858 5.48711 5.49626 5.60537 5.66313 5.70050 5.70778 5.71607 5.87584 6.00569 6.04984 6.10046 6.12224 6.23169 6.31681 6.36714 6.46196 6.46654 6.51764 6.56592 6.61334 6.75721 6.96189 7.01034 7.08168 7.54592 7.60861 7.66419 7.81990 8.21953 8.41614 9.19085 9.80190 10.47456 11.40440 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.002433 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.712949 B =11503.500526 C =11563.175383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.102 4.102 9 C 0.510 3.490 10 O -0.533 6.533 11 N -0.595 5.595 12 C 0.106 3.894 13 C -0.133 4.133 14 C -0.129 4.129 15 C 0.157 3.843 16 H 0.058 0.942 17 C 0.131 3.869 18 H 0.100 0.900 19 C -0.151 4.151 20 C 0.180 3.820 21 N -0.599 5.599 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.110 4.110 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.046 0.954 50 H 0.047 0.953 51 H 0.252 0.748 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 13.005 -19.833 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.055 4.055 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.327 5.327 12 C -0.017 4.017 13 C -0.172 4.172 14 C -0.170 4.170 15 C 0.048 3.952 16 H 0.076 0.924 17 C 0.027 3.973 18 H 0.118 0.882 19 C -0.190 4.190 20 C 0.056 3.944 21 N -0.324 5.324 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.567 5.567 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.386 13.262 -19.082 24.383 hybrid contribution 0.081 -0.996 0.632 1.183 sum -7.305 12.265 -18.450 23.328 Atomic orbital electron populations 1.20775 0.91299 1.02837 1.02051 1.19823 0.95917 0.93043 0.99588 1.20844 0.93489 0.97369 1.02459 1.19822 0.93807 0.95146 0.99609 1.20774 1.00027 0.94105 1.02049 1.20811 0.99455 0.91443 1.01100 1.19263 0.93498 0.93598 0.99091 1.20729 1.01928 0.95971 0.95539 1.20480 0.77991 0.80818 0.90953 1.90722 1.50695 1.53294 1.46227 1.47659 1.55717 1.22067 1.07270 1.21854 0.99616 0.91643 0.88620 1.21929 1.01031 0.95177 0.99067 1.22113 1.01185 1.00481 0.93175 1.21411 0.95389 0.90554 0.87829 0.92396 1.21864 0.97257 0.97056 0.81162 0.88170 1.23078 0.95122 1.00449 1.00366 1.21368 0.90984 0.88862 0.93225 1.44983 1.27446 1.36382 1.23595 1.19034 1.03022 1.07747 1.05602 0.90471 1.24808 0.97150 0.99138 0.99205 1.69963 1.14951 1.38557 1.33215 0.86130 0.77476 0.82577 0.79787 1.21680 1.21798 1.20662 1.20816 0.93358 0.97561 1.01074 0.91348 0.91500 0.91655 0.86412 0.91350 0.91655 0.91508 0.86389 0.88083 0.88151 0.90159 0.91241 0.91873 0.91350 0.92147 0.91861 0.92291 0.92123 0.93580 0.93430 0.93755 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.08 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.32 9.36 -39.58 -0.37 -1.69 16 4 C -0.08 -0.92 5.88 -104.62 -0.62 -1.54 16 5 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 6 C -0.11 -1.30 9.36 -39.58 -0.37 -1.67 16 7 C -0.05 -0.66 4.37 -104.62 -0.46 -1.12 16 8 C -0.10 -1.10 4.14 -29.04 -0.12 -1.22 16 9 C 0.51 7.78 7.65 -10.99 -0.08 7.70 16 10 O -0.53 -10.48 15.36 5.55 0.09 -10.39 16 11 N -0.59 -8.95 2.73 -164.75 -0.45 -9.40 16 12 C 0.11 1.21 6.04 -3.64 -0.02 1.19 16 13 C -0.13 -1.66 6.11 -26.62 -0.16 -1.82 16 14 C -0.13 -2.23 5.10 -26.86 -0.14 -2.37 16 15 C 0.16 3.19 3.62 -66.12 -0.24 2.95 16 16 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 17 C 0.13 2.47 3.10 -67.07 -0.21 2.27 16 18 H 0.10 2.18 6.96 -51.93 -0.36 1.82 16 19 C -0.15 -2.92 6.08 -25.17 -0.15 -3.07 16 20 C 0.18 4.37 5.23 -2.21 -0.01 4.36 16 21 N -0.60 -15.04 2.94 -160.96 -0.47 -15.51 16 22 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 23 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 24 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 25 N -0.92 -27.00 10.41 55.49 0.58 -26.42 16 26 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 C -0.11 -1.31 9.36 -39.59 -0.37 -1.68 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.10 0.86 7.56 -51.93 -0.39 0.47 16 40 H 0.10 0.85 7.87 -51.93 -0.41 0.44 16 41 H 0.08 0.66 5.82 -51.93 -0.30 0.36 16 42 H 0.07 0.78 7.51 -51.93 -0.39 0.39 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.17 7.11 -51.93 -0.37 0.80 16 47 H 0.06 1.04 6.78 -51.93 -0.35 0.69 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.05 1.22 7.46 -51.93 -0.39 0.83 16 50 H 0.05 1.29 7.52 -51.93 -0.39 0.90 16 51 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 52 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -32.99 403.62 -11.48 -44.46 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.81 Total: 1.11 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.47 Total: -7.06 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.35 Total: -51.34 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.99 -11.48 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049693251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.959 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.41 seconds