Wall clock time and date at job start Wed Apr 1 2020 01:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38229 * 120.00146 * 2 1 4 4 C 1.38236 * 120.00170 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00161 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99794 * 0.02562 * 4 3 2 7 7 C 1.38234 * 120.00069 * 359.95865 * 6 4 3 8 8 C 1.50699 * 119.99964 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.47055 * 89.99730 * 8 7 6 10 10 O 1.21275 * 120.00067 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.45731 * 117.76238 * 0.02562 * 11 9 8 13 13 C 1.53052 * 109.55733 * 141.10447 * 12 11 9 14 14 C 1.52937 * 108.49298 * 53.80400 * 13 12 11 15 15 C 1.53523 * 109.71069 * 293.95000 * 14 13 12 16 16 H 1.08994 * 111.61511 * 293.35442 * 15 14 13 17 17 C 1.44192 * 117.75845 * 179.97438 * 11 9 8 18 18 H 1.08995 * 109.22451 * 332.63694 * 17 11 9 19 19 C 1.54062 * 111.76465 * 93.53735 * 17 11 9 20 20 C 1.54059 * 103.74174 * 153.25892 * 19 17 11 21 21 N 1.46885 * 107.70750 * 342.86942 * 20 19 17 22 22 C 1.36929 * 125.58223 * 177.03431 * 21 20 19 23 23 H 1.08005 * 120.00377 * 187.01881 * 22 21 20 24 24 C 1.38816 * 120.00087 * 7.01346 * 22 21 20 25 25 N 1.31612 * 120.00084 * 7.52670 * 24 22 21 26 26 Si 1.86803 * 120.00018 * 187.52311 * 24 22 21 27 27 H 1.48502 * 109.46942 * 265.02006 * 26 24 22 28 28 H 1.48496 * 109.47117 * 25.01990 * 26 24 22 29 29 H 1.48500 * 109.46916 * 145.02114 * 26 24 22 30 30 C 1.38234 * 119.99865 * 180.21114 * 2 1 3 31 31 H 1.08999 * 109.47432 * 90.00315 * 1 2 3 32 32 H 1.09003 * 109.47293 * 210.00309 * 1 2 3 33 33 H 1.09000 * 109.46864 * 329.99987 * 1 2 3 34 34 H 1.08005 * 119.99982 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47165 * 270.02270 * 5 4 3 36 36 H 1.09004 * 109.46603 * 30.01966 * 5 4 3 37 37 H 1.08993 * 109.46923 * 150.01974 * 5 4 3 38 38 H 1.07994 * 119.99755 * 179.97438 * 6 4 3 39 39 H 1.08994 * 109.47248 * 329.99662 * 8 7 6 40 40 H 1.08998 * 109.46768 * 209.99696 * 8 7 6 41 41 H 1.08996 * 109.45909 * 261.13355 * 12 11 9 42 42 H 1.09007 * 109.45485 * 21.07992 * 12 11 9 43 43 H 1.09000 * 109.63420 * 173.50670 * 13 12 11 44 44 H 1.09001 * 109.63464 * 293.90145 * 13 12 11 45 45 H 1.08997 * 109.41919 * 54.10619 * 14 13 12 46 46 H 1.08996 * 109.41840 * 173.91039 * 14 13 12 47 47 H 1.09003 * 110.57336 * 34.69973 * 19 17 11 48 48 H 1.08998 * 110.70462 * 271.88540 * 19 17 11 49 49 H 1.09001 * 109.81242 * 223.31936 * 20 19 17 50 50 H 1.09004 * 109.86594 * 102.44703 * 20 19 17 51 51 H 0.97001 * 120.00390 * 179.97438 * 25 24 22 52 52 H 1.08000 * 120.00072 * 0.03954 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3341 2.5022 0.0000 6 6 4.2717 -0.0001 0.0005 7 6 3.5805 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0014 9 6 4.5850 -2.9368 1.4225 10 8 4.1905 -2.2542 2.3440 11 7 5.2471 -4.0846 1.6692 12 6 5.6987 -4.8670 0.5258 13 6 7.0819 -5.4526 0.8198 14 6 7.0125 -6.2213 2.1401 15 6 6.7466 -5.2447 3.2945 16 1 7.5876 -4.5692 3.4507 17 6 5.4610 -4.4537 3.0466 18 1 5.4880 -3.5528 3.6595 19 6 4.3507 -5.3863 3.5671 20 6 5.0416 -6.1887 4.6862 21 7 6.4926 -6.0447 4.5087 22 6 7.4519 -6.5627 5.3372 23 1 8.4906 -6.3080 5.1864 24 6 7.0895 -7.4152 6.3710 25 7 5.8487 -7.8436 6.4664 26 14 8.3629 -7.9545 7.6269 27 1 8.9345 -9.2637 7.2213 28 1 9.4468 -6.9421 7.6988 29 1 7.7196 -8.0865 8.9587 30 6 2.1982 -1.1971 -0.0044 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.5158 2.8164 -1.0278 36 1 3.7449 3.2621 0.5134 37 1 5.2864 2.3721 0.5139 38 1 5.3516 -0.0001 0.0005 39 1 5.2864 -2.3722 -0.5123 40 1 3.7449 -3.2621 -0.5122 41 1 4.9937 -5.6770 0.3388 42 1 5.7555 -4.2253 -0.3536 43 1 7.3712 -6.1300 0.0163 44 1 7.8114 -4.6466 0.8997 45 1 6.2074 -6.9544 2.0908 46 1 7.9588 -6.7346 2.3106 47 1 4.0069 -6.0517 2.7752 48 1 3.5184 -4.8082 3.9683 49 1 4.7630 -7.2399 4.6131 50 1 4.7477 -5.7955 5.6595 51 1 5.5955 -8.4396 7.1886 52 1 1.6582 -2.1324 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049693252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:01 Heat of formation + Delta-G solvation = 4.951426 kcal Electronic energy + Delta-G solvation = -30414.508501 eV Core-core repulsion = 26571.758394 eV Total energy + Delta-G solvation = -3842.750108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.60219 -39.54092 -37.82416 -35.36953 -33.64033 -33.62603 -32.53477 -32.21925 -29.41527 -28.61986 -28.01351 -27.07383 -26.79941 -24.45862 -24.37075 -22.02208 -21.54024 -20.84516 -20.19255 -19.57555 -18.03315 -17.16670 -16.88069 -16.41729 -16.06612 -15.55650 -14.97798 -14.73626 -14.60054 -14.21518 -14.14844 -13.86290 -13.64677 -13.43909 -13.38366 -13.13658 -13.01385 -12.92686 -12.69545 -12.63919 -12.31340 -12.01321 -11.99008 -11.75390 -11.57670 -11.40917 -11.14110 -11.07675 -10.99991 -10.92619 -10.77964 -10.66688 -10.44376 -10.09890 -10.08431 -9.64159 -9.52858 -9.49768 -8.64910 -8.60585 -8.59803 -8.27692 -6.83762 -5.70667 -3.06550 1.27364 1.32227 2.79977 3.18694 3.39945 3.45864 3.47856 3.68671 4.48394 4.50914 4.62225 4.66900 4.68667 4.95645 5.02915 5.08381 5.14097 5.16346 5.20512 5.29574 5.37487 5.38644 5.42535 5.43947 5.45463 5.48550 5.48779 5.58346 5.66067 5.69716 5.70684 5.71416 5.91004 6.01656 6.04760 6.09795 6.11250 6.24374 6.31632 6.38999 6.45911 6.46408 6.56283 6.58922 6.61661 6.77267 6.96136 7.02114 7.12632 7.50645 7.60874 7.68838 7.82392 8.25689 8.41278 9.20548 9.81379 10.46895 11.39437 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002447 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.860712 B =11441.800182 C =11671.900951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.102 4.102 9 C 0.505 3.495 10 O -0.530 6.530 11 N -0.589 5.589 12 C 0.108 3.892 13 C -0.132 4.132 14 C -0.129 4.129 15 C 0.160 3.840 16 H 0.054 0.946 17 C 0.137 3.863 18 H 0.089 0.911 19 C -0.148 4.148 20 C 0.175 3.825 21 N -0.595 5.595 22 C -0.228 4.228 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.918 5.918 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.281 1.281 29 H -0.290 1.290 30 C -0.110 4.110 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.034 0.966 51 H 0.252 0.748 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 14.201 -19.429 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.055 4.055 8 C -0.142 4.142 9 C 0.293 3.707 10 O -0.406 6.406 11 N -0.321 5.321 12 C -0.015 4.015 13 C -0.171 4.171 14 C -0.169 4.169 15 C 0.052 3.948 16 H 0.072 0.928 17 C 0.032 3.968 18 H 0.107 0.893 19 C -0.187 4.187 20 C 0.050 3.950 21 N -0.319 5.319 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.565 5.565 26 Si 0.741 3.259 27 H -0.217 1.217 28 H -0.206 1.206 29 H -0.217 1.217 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.052 0.948 51 H 0.062 0.938 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.052 14.381 -18.682 24.341 hybrid contribution 0.658 -0.582 0.721 1.136 sum -5.394 13.799 -17.962 23.284 Atomic orbital electron populations 1.20776 0.91296 1.02844 1.02058 1.19823 0.95920 0.93039 0.99555 1.20844 0.93488 0.97372 1.02467 1.19823 0.93808 0.95143 0.99607 1.20773 1.00019 0.94110 1.02051 1.20809 0.99450 0.91444 1.01146 1.19266 0.93505 0.93597 0.99083 1.20754 1.01866 0.96059 0.95520 1.20551 0.78401 0.80799 0.90995 1.90719 1.50130 1.53610 1.46174 1.47089 1.55921 1.22354 1.06707 1.21530 0.96671 0.95551 0.87782 1.21847 0.95710 1.00232 0.99303 1.22203 1.02421 0.98970 0.93348 1.20993 0.93913 0.91897 0.88020 0.92790 1.21006 0.96483 0.99018 0.80274 0.89256 1.22943 0.97812 0.98161 0.99816 1.21079 0.82555 0.97975 0.93365 1.44489 1.02247 1.60343 1.24799 1.18995 0.88138 1.21704 1.06747 0.90505 1.24806 0.96646 0.99177 0.99663 1.69966 1.16292 1.36832 1.33365 0.86127 0.80321 0.78368 0.81096 1.21672 1.20642 1.21652 1.20818 0.93358 0.97563 1.01065 0.91343 0.91489 0.91654 0.86413 0.91347 0.91658 0.91517 0.86392 0.88050 0.88096 0.91882 0.90380 0.91165 0.91751 0.91901 0.91877 0.92540 0.92084 0.92438 0.94818 0.93758 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.08 -0.92 5.88 -104.63 -0.62 -1.53 16 3 C -0.12 -1.32 9.36 -39.59 -0.37 -1.69 16 4 C -0.08 -0.92 5.88 -104.62 -0.62 -1.53 16 5 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 6 C -0.11 -1.30 9.36 -39.58 -0.37 -1.67 16 7 C -0.05 -0.66 4.37 -104.62 -0.46 -1.11 16 8 C -0.10 -1.10 4.16 -29.03 -0.12 -1.22 16 9 C 0.51 7.69 7.58 -10.98 -0.08 7.60 16 10 O -0.53 -10.34 15.32 5.56 0.09 -10.25 16 11 N -0.59 -8.92 2.80 -167.73 -0.47 -9.39 16 12 C 0.11 1.24 6.06 -4.43 -0.03 1.22 16 13 C -0.13 -1.66 6.10 -26.74 -0.16 -1.82 16 14 C -0.13 -2.25 5.32 -26.49 -0.14 -2.39 16 15 C 0.16 3.27 3.33 -67.06 -0.22 3.05 16 16 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 17 C 0.14 2.60 2.70 -68.62 -0.19 2.41 16 18 H 0.09 1.91 7.10 -51.93 -0.37 1.54 16 19 C -0.15 -2.98 6.45 -25.62 -0.17 -3.15 16 20 C 0.18 4.33 5.42 -3.28 -0.02 4.32 16 21 N -0.59 -14.99 2.92 -163.58 -0.48 -15.47 16 22 C -0.23 -6.27 10.25 -15.06 -0.15 -6.42 16 23 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 24 C -0.01 -0.18 5.44 -17.43 -0.09 -0.27 16 25 N -0.92 -26.99 10.48 55.49 0.58 -26.41 16 26 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 30 C -0.11 -1.30 9.36 -39.58 -0.37 -1.67 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.10 0.85 7.26 -51.93 -0.38 0.47 16 40 H 0.10 0.87 7.97 -51.93 -0.41 0.45 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.65 5.81 -51.93 -0.30 0.35 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.19 8.02 -51.93 -0.42 0.77 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 50 H 0.03 0.92 7.85 -51.93 -0.41 0.52 16 51 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 52 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -32.97 406.46 -11.59 -44.56 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.95 Total: 0.76 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.45 Total: -7.03 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.37 Total: -51.26 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.97 -11.59 -44.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049693252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.508 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds