Wall clock time and date at job start Wed Apr 1 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38229 * 120.00146 * 2 1 4 4 C 1.38236 * 120.00170 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00161 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99794 * 0.02562 * 4 3 2 7 7 C 1.38234 * 120.00069 * 359.95865 * 6 4 3 8 8 C 1.50699 * 119.99964 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.47055 * 89.99730 * 8 7 6 10 10 O 1.21275 * 120.00067 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.45731 * 117.76238 * 0.02562 * 11 9 8 13 13 C 1.53052 * 109.55733 * 141.10447 * 12 11 9 14 14 C 1.52937 * 108.49298 * 53.80400 * 13 12 11 15 15 C 1.53523 * 109.71069 * 293.95000 * 14 13 12 16 16 H 1.08994 * 111.61511 * 293.35442 * 15 14 13 17 17 C 1.44192 * 117.75845 * 179.97438 * 11 9 8 18 18 H 1.08995 * 109.22451 * 332.63694 * 17 11 9 19 19 C 1.54062 * 111.76465 * 93.53735 * 17 11 9 20 20 C 1.54059 * 103.74174 * 153.25892 * 19 17 11 21 21 N 1.46885 * 107.70750 * 342.86942 * 20 19 17 22 22 C 1.36929 * 125.58223 * 177.03431 * 21 20 19 23 23 H 1.08005 * 120.00377 * 187.01881 * 22 21 20 24 24 C 1.38816 * 120.00087 * 7.01346 * 22 21 20 25 25 N 1.31612 * 120.00084 * 7.52670 * 24 22 21 26 26 Si 1.86803 * 120.00018 * 187.52311 * 24 22 21 27 27 H 1.48502 * 109.46942 * 265.02006 * 26 24 22 28 28 H 1.48496 * 109.47117 * 25.01990 * 26 24 22 29 29 H 1.48500 * 109.46916 * 145.02114 * 26 24 22 30 30 C 1.38234 * 119.99865 * 180.21114 * 2 1 3 31 31 H 1.08999 * 109.47432 * 90.00315 * 1 2 3 32 32 H 1.09003 * 109.47293 * 210.00309 * 1 2 3 33 33 H 1.09000 * 109.46864 * 329.99987 * 1 2 3 34 34 H 1.08005 * 119.99982 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47165 * 270.02270 * 5 4 3 36 36 H 1.09004 * 109.46603 * 30.01966 * 5 4 3 37 37 H 1.08993 * 109.46923 * 150.01974 * 5 4 3 38 38 H 1.07994 * 119.99755 * 179.97438 * 6 4 3 39 39 H 1.08994 * 109.47248 * 329.99662 * 8 7 6 40 40 H 1.08998 * 109.46768 * 209.99696 * 8 7 6 41 41 H 1.08996 * 109.45909 * 261.13355 * 12 11 9 42 42 H 1.09007 * 109.45485 * 21.07992 * 12 11 9 43 43 H 1.09000 * 109.63420 * 173.50670 * 13 12 11 44 44 H 1.09001 * 109.63464 * 293.90145 * 13 12 11 45 45 H 1.08997 * 109.41919 * 54.10619 * 14 13 12 46 46 H 1.08996 * 109.41840 * 173.91039 * 14 13 12 47 47 H 1.09003 * 110.57336 * 34.69973 * 19 17 11 48 48 H 1.08998 * 110.70462 * 271.88540 * 19 17 11 49 49 H 1.09001 * 109.81242 * 223.31936 * 20 19 17 50 50 H 1.09004 * 109.86594 * 102.44703 * 20 19 17 51 51 H 0.97001 * 120.00390 * 179.97438 * 25 24 22 52 52 H 1.08000 * 120.00072 * 0.03954 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3341 2.5022 0.0000 6 6 4.2717 -0.0001 0.0005 7 6 3.5805 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0014 9 6 4.5850 -2.9368 1.4225 10 8 4.1905 -2.2542 2.3440 11 7 5.2471 -4.0846 1.6692 12 6 5.6987 -4.8670 0.5258 13 6 7.0819 -5.4526 0.8198 14 6 7.0125 -6.2213 2.1401 15 6 6.7466 -5.2447 3.2945 16 1 7.5876 -4.5692 3.4507 17 6 5.4610 -4.4537 3.0466 18 1 5.4880 -3.5528 3.6595 19 6 4.3507 -5.3863 3.5671 20 6 5.0416 -6.1887 4.6862 21 7 6.4926 -6.0447 4.5087 22 6 7.4519 -6.5627 5.3372 23 1 8.4906 -6.3080 5.1864 24 6 7.0895 -7.4152 6.3710 25 7 5.8487 -7.8436 6.4664 26 14 8.3629 -7.9545 7.6269 27 1 8.9345 -9.2637 7.2213 28 1 9.4468 -6.9421 7.6988 29 1 7.7196 -8.0865 8.9587 30 6 2.1982 -1.1971 -0.0044 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.5158 2.8164 -1.0278 36 1 3.7449 3.2621 0.5134 37 1 5.2864 2.3721 0.5139 38 1 5.3516 -0.0001 0.0005 39 1 5.2864 -2.3722 -0.5123 40 1 3.7449 -3.2621 -0.5122 41 1 4.9937 -5.6770 0.3388 42 1 5.7555 -4.2253 -0.3536 43 1 7.3712 -6.1300 0.0163 44 1 7.8114 -4.6466 0.8997 45 1 6.2074 -6.9544 2.0908 46 1 7.9588 -6.7346 2.3106 47 1 4.0069 -6.0517 2.7752 48 1 3.5184 -4.8082 3.9683 49 1 4.7630 -7.2399 4.6131 50 1 4.7477 -5.7955 5.6595 51 1 5.5955 -8.4396 7.1886 52 1 1.6582 -2.1324 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049693252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:58 Heat of formation + Delta-G solvation = -12.180682 kcal Electronic energy + Delta-G solvation = -30415.251405 eV Core-core repulsion = 26571.758394 eV Total energy + Delta-G solvation = -3843.493011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.84334 -40.47772 -39.24740 -36.85927 -34.66559 -34.34599 -34.03351 -33.84850 -31.10079 -30.10132 -29.10749 -27.89135 -27.53161 -26.34475 -25.75035 -23.33665 -22.64203 -22.01024 -21.59577 -20.79395 -19.41708 -18.76502 -18.35406 -17.24605 -16.96012 -16.83418 -16.76073 -16.12871 -16.02957 -15.50263 -15.12089 -14.98632 -14.92268 -14.70507 -14.34839 -14.13088 -13.98180 -13.89009 -13.83500 -13.75865 -13.49747 -13.33387 -13.17410 -13.15355 -12.77865 -12.70237 -12.54808 -12.38263 -12.33915 -12.27994 -12.06327 -11.95725 -11.82446 -11.77685 -11.62826 -11.54224 -11.16256 -10.78497 -10.73126 -9.59084 -9.47413 -9.38587 -8.91088 -7.85749 -5.23778 0.44674 0.51611 1.43921 1.46261 1.55315 1.65100 2.01329 2.48607 2.84232 3.30855 3.52268 3.62793 3.73925 3.84867 3.90447 3.96831 4.00031 4.03144 4.13822 4.18073 4.26552 4.32379 4.39775 4.45784 4.54820 4.58087 4.60157 4.63252 4.66324 4.71864 4.72686 4.82495 4.84270 4.86317 4.87284 4.96775 5.02522 5.07639 5.08357 5.21318 5.30911 5.36592 5.38864 5.39639 5.52757 5.60497 5.65544 5.67209 5.72132 5.72533 5.76073 6.17562 6.18762 6.45175 7.06249 7.23449 7.73870 8.38829 9.23519 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002447 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.860712 B =11441.800182 C =11671.900951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.111 4.111 6 C -0.129 4.129 7 C -0.070 4.070 8 C -0.091 4.091 9 C 0.503 3.497 10 O -0.581 6.581 11 N -0.588 5.588 12 C 0.101 3.899 13 C -0.122 4.122 14 C -0.119 4.119 15 C 0.155 3.845 16 H 0.048 0.952 17 C 0.155 3.845 18 H 0.058 0.942 19 C -0.132 4.132 20 C 0.188 3.812 21 N -0.615 5.615 22 C -0.237 4.237 23 H 0.082 0.918 24 C -0.066 4.066 25 N -0.950 5.950 26 Si 0.977 3.023 27 H -0.283 1.283 28 H -0.269 1.269 29 H -0.296 1.296 30 C -0.130 4.130 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.027 0.973 50 H -0.008 1.008 51 H 0.246 0.754 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 15.127 -22.753 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.153 4.153 4 C -0.095 4.095 5 C -0.168 4.168 6 C -0.147 4.147 7 C -0.071 4.071 8 C -0.130 4.130 9 C 0.293 3.707 10 O -0.461 6.461 11 N -0.319 5.319 12 C -0.020 4.020 13 C -0.160 4.160 14 C -0.159 4.159 15 C 0.048 3.952 16 H 0.066 0.934 17 C 0.049 3.951 18 H 0.076 0.924 19 C -0.171 4.171 20 C 0.062 3.938 21 N -0.340 5.340 22 C -0.365 4.365 23 H 0.100 0.900 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.806 3.194 27 H -0.210 1.210 28 H -0.194 1.194 29 H -0.223 1.223 30 C -0.148 4.148 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.093 0.907 42 H 0.143 0.857 43 H 0.123 0.877 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.045 0.955 50 H 0.010 0.990 51 H 0.056 0.944 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.327 15.318 -22.079 27.395 hybrid contribution 0.429 -0.799 1.754 1.975 sum -4.898 14.519 -20.325 25.454 Atomic orbital electron populations 1.20809 0.89723 1.03129 1.03138 1.20196 0.97325 0.93050 0.98977 1.21149 0.93747 0.98126 1.02305 1.20204 0.94298 0.96082 0.98949 1.20808 0.99729 0.93075 1.03153 1.21063 1.00072 0.91868 1.01719 1.19501 0.93826 0.94348 0.99381 1.20809 1.03870 0.96090 0.92238 1.21398 0.76958 0.79802 0.92515 1.90705 1.52068 1.55059 1.48229 1.47139 1.56061 1.22996 1.05720 1.21921 0.96019 0.96519 0.87556 1.21814 0.96808 1.00421 0.96974 1.21987 1.00905 0.98083 0.94964 1.21201 0.94386 0.92080 0.87502 0.93408 1.20465 0.94908 0.96876 0.82839 0.92374 1.22735 0.97671 0.98046 0.98664 1.20748 0.83275 0.96592 0.93146 1.44742 1.01999 1.60734 1.26487 1.19368 0.88907 1.21155 1.07116 0.89976 1.25658 0.98608 0.99875 1.01746 1.70180 1.18186 1.37674 1.33804 0.85079 0.78105 0.78186 0.78069 1.21003 1.19412 1.22297 1.21060 0.93739 0.98231 1.01775 0.89789 0.91695 0.90876 0.84685 0.89776 0.90912 0.91603 0.85601 0.84797 0.85146 0.90657 0.85656 0.87718 0.91046 0.93475 0.93323 0.90658 0.92386 0.95510 0.99006 0.94424 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.01 71.24 0.71 -0.97 16 2 C -0.10 -1.98 5.88 -19.87 -0.12 -2.10 16 3 C -0.14 -2.70 9.36 22.27 0.21 -2.50 16 4 C -0.10 -1.95 5.88 -19.86 -0.12 -2.07 16 5 C -0.11 -1.63 10.01 71.24 0.71 -0.92 16 6 C -0.13 -2.84 9.36 22.27 0.21 -2.63 16 7 C -0.07 -1.56 4.37 -19.87 -0.09 -1.65 16 8 C -0.09 -1.62 4.16 29.10 0.12 -1.50 16 9 C 0.50 14.33 7.58 87.66 0.66 15.00 16 10 O -0.58 -22.68 15.32 -3.01 -0.05 -22.73 16 11 N -0.59 -16.51 2.80 -802.97 -2.25 -18.76 16 12 C 0.10 1.87 6.06 86.54 0.52 2.39 16 13 C -0.12 -2.57 6.10 30.59 0.19 -2.38 16 14 C -0.12 -4.02 5.32 30.75 0.16 -3.86 16 15 C 0.16 6.40 3.33 44.95 0.15 6.54 16 16 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 17 C 0.16 5.94 2.70 45.77 0.12 6.06 16 18 H 0.06 2.59 7.10 -2.39 -0.02 2.57 16 19 C -0.13 -5.45 6.45 31.31 0.20 -5.25 16 20 C 0.19 9.84 5.42 86.66 0.47 10.31 16 21 N -0.61 -32.22 2.92 -671.45 -1.96 -34.18 16 22 C -0.24 -13.41 10.25 84.04 0.86 -12.55 16 23 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 24 C -0.07 -3.81 5.44 84.86 0.46 -3.35 16 25 N -0.95 -58.46 10.48 21.65 0.23 -58.23 16 26 Si 0.98 46.57 29.56 68.60 2.03 48.59 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 30 C -0.13 -2.91 9.36 22.27 0.21 -2.70 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 33 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 34 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 37 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 38 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.13 1.52 7.26 -2.39 -0.02 1.51 16 40 H 0.13 1.59 7.97 -2.39 -0.02 1.57 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.13 1.24 5.81 -2.38 -0.01 1.23 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.73 8.02 -2.39 -0.02 1.71 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.03 1.55 7.07 -2.39 -0.02 1.53 16 50 H -0.01 -0.50 7.85 -2.38 -0.02 -0.52 16 51 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 52 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -77.56 406.46 4.54 -73.02 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.88 Total: 16.41 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.66 Total: -4.12 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -3.98 Total: -111.17 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -77.56 4.54 -73.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049693252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.843 kcal (2) G-P(sol) polarization free energy of solvation -77.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds