Wall clock time and date at job start Wed Apr 1 2020 01:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 119.99965 * 2 1 4 4 C 1.38237 * 120.00451 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00555 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99450 * 359.95628 * 4 3 2 7 7 C 1.38233 * 119.99966 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.99980 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.46869 * 90.00014 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.47857 * 122.22855 * 359.97438 * 11 9 8 13 13 C 1.53179 * 110.80499 * 127.45562 * 12 11 9 14 14 C 1.53872 * 111.45984 * 48.80028 * 13 12 11 15 15 C 1.51087 * 107.33902 * 302.91616 * 14 13 12 16 16 H 1.08997 * 108.29836 * 308.77455 * 15 14 13 17 17 C 1.45733 * 122.22900 * 180.27450 * 11 9 8 18 18 H 1.09004 * 111.06906 * 118.61046 * 17 11 9 19 19 C 1.53427 * 116.36903 * 350.10702 * 17 11 9 20 20 C 1.55466 * 101.67076 * 207.28072 * 19 17 11 21 21 N 1.45015 * 119.19486 * 183.90325 * 15 14 13 22 22 C 1.36943 * 126.56261 * 28.73722 * 21 15 14 23 23 H 1.08001 * 119.99639 * 0.03033 * 22 21 15 24 24 C 1.38800 * 120.00094 * 180.02562 * 22 21 15 25 25 N 1.31617 * 120.00370 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99957 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47101 * 60.00066 * 26 24 22 28 28 H 1.48502 * 109.47137 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46999 * 299.99622 * 26 24 22 30 30 C 1.38233 * 120.00375 * 0.25482 * 7 6 4 31 31 H 1.09000 * 109.46676 * 90.00005 * 1 2 3 32 32 H 1.08994 * 109.47323 * 209.99689 * 1 2 3 33 33 H 1.09000 * 109.47345 * 330.00278 * 1 2 3 34 34 H 1.08008 * 120.00112 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47187 * 269.98260 * 5 4 3 36 36 H 1.09007 * 109.47179 * 29.98268 * 5 4 3 37 37 H 1.08992 * 109.47263 * 149.97853 * 5 4 3 38 38 H 1.07998 * 119.99702 * 179.97438 * 6 4 3 39 39 H 1.09004 * 109.47210 * 330.00307 * 8 7 6 40 40 H 1.08994 * 109.47551 * 209.99960 * 8 7 6 41 41 H 1.08997 * 109.15398 * 247.92079 * 12 11 9 42 42 H 1.08998 * 109.15911 * 7.10352 * 12 11 9 43 43 H 1.08999 * 109.23063 * 288.20770 * 13 12 11 44 44 H 1.08998 * 108.97471 * 169.21950 * 13 12 11 45 45 H 1.09000 * 109.88265 * 183.46228 * 14 13 12 46 46 H 1.09001 * 109.88572 * 62.37477 * 14 13 12 47 47 H 1.08994 * 110.98996 * 325.37718 * 19 17 11 48 48 H 1.09004 * 110.98674 * 89.18882 * 19 17 11 49 49 H 1.09001 * 109.96169 * 141.98000 * 20 19 17 50 50 H 1.09000 * 109.96333 * 263.17841 * 20 19 17 51 51 H 0.97008 * 120.00338 * 180.02562 * 25 24 22 52 52 H 1.07996 * 120.00354 * 179.72262 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0002 7 6 3.5806 -1.1970 0.0002 8 6 4.3340 -2.5022 0.0000 9 6 4.5857 -2.9370 1.4208 10 8 4.1916 -2.2546 2.3428 11 7 5.2435 -4.0873 1.6670 12 6 5.7390 -4.9602 0.5813 13 6 7.2267 -5.2722 0.7702 14 6 7.5271 -5.7338 2.2070 15 6 7.0566 -4.6413 3.1386 16 1 7.4814 -3.6964 2.8000 17 6 5.5080 -4.5569 3.0210 18 1 5.0294 -5.5193 3.2025 19 6 5.2104 -3.5679 4.1556 20 6 6.2058 -4.0393 5.2529 21 7 7.2950 -4.7748 4.5627 22 6 8.3265 -5.4516 5.1573 23 1 9.0644 -5.9537 4.5492 24 6 8.4235 -5.4922 6.5413 25 7 7.5246 -4.8798 7.2823 26 14 9.8310 -6.4149 7.3522 27 1 11.1235 -5.8260 6.9191 28 1 9.7083 -6.3069 8.8282 29 1 9.7800 -7.8446 6.9541 30 6 2.1982 -1.1971 -0.0051 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1325 -0.0004 35 1 4.5156 2.8166 -1.0289 36 1 3.7450 3.2622 0.5125 37 1 5.2864 2.3722 0.5127 38 1 5.3517 0.0001 -0.0010 39 1 5.2863 -2.3719 -0.5141 40 1 3.7448 -3.2619 -0.5134 41 1 5.1718 -5.8910 0.5838 42 1 5.5959 -4.4576 -0.3752 43 1 7.8113 -4.3780 0.5539 44 1 7.5144 -6.0611 0.0753 45 1 8.5989 -5.8895 2.3299 46 1 6.9905 -6.6585 2.4191 47 1 5.4248 -2.5445 3.8477 48 1 4.1795 -3.6636 4.4966 49 1 6.6151 -3.1770 5.7793 50 1 5.6984 -4.6984 5.9573 51 1 7.5926 -4.9079 8.2496 52 1 1.6583 -2.1324 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049693253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:09 Heat of formation + Delta-G solvation = 13.241182 kcal Electronic energy + Delta-G solvation = -30623.743480 eV Core-core repulsion = 26781.352843 eV Total energy + Delta-G solvation = -3842.390637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.45870 -39.49495 -37.65265 -35.37676 -33.59038 -33.57615 -32.56228 -32.10490 -29.34202 -28.36117 -28.00114 -27.05757 -26.76260 -24.47788 -24.30426 -21.59279 -21.46251 -20.80775 -20.35965 -19.62434 -18.62299 -16.82495 -16.39108 -16.05533 -16.00150 -15.66563 -15.06959 -14.69923 -14.42082 -14.18500 -14.12112 -13.98325 -13.52679 -13.50325 -13.34987 -13.07452 -12.98004 -12.95467 -12.66042 -12.40645 -12.32613 -12.18798 -11.84141 -11.74372 -11.53764 -11.50489 -11.17026 -11.03723 -11.00343 -10.82204 -10.68383 -10.50000 -10.41348 -10.09312 -9.96186 -9.80362 -9.58445 -9.01471 -8.61108 -8.56011 -8.52051 -8.17367 -6.79849 -5.67078 -3.01486 1.31279 1.36026 2.89238 3.19294 3.41994 3.46125 3.47789 3.71641 4.51279 4.54908 4.66623 4.69877 4.71221 4.89497 5.06473 5.07181 5.16985 5.18307 5.24247 5.29693 5.39439 5.41339 5.41736 5.46195 5.46846 5.49054 5.52267 5.63265 5.68910 5.72206 5.75328 5.79148 5.89592 6.02474 6.08284 6.12030 6.13498 6.28966 6.32140 6.41883 6.49420 6.50362 6.59578 6.60420 6.75257 6.82559 6.93621 7.00273 7.22798 7.61094 7.68777 7.76858 7.87545 8.28144 8.50435 9.22084 9.86160 10.54848 11.44830 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.002655 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.338478 B =10545.385579 C =11067.309905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.109 4.109 7 C -0.053 4.053 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.522 6.522 11 N -0.603 5.603 12 C 0.110 3.890 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.160 3.840 16 H 0.016 0.984 17 C 0.117 3.883 18 H 0.078 0.922 19 C -0.129 4.129 20 C 0.173 3.827 21 N -0.593 5.593 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C -0.111 4.111 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.253 0.747 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 7.187 -20.697 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.127 4.127 7 C -0.053 4.053 8 C -0.143 4.143 9 C 0.303 3.697 10 O -0.397 6.397 11 N -0.337 5.337 12 C -0.013 4.013 13 C -0.168 4.168 14 C -0.155 4.155 15 C 0.051 3.949 16 H 0.034 0.966 17 C 0.013 3.987 18 H 0.096 0.904 19 C -0.167 4.167 20 C 0.048 3.952 21 N -0.317 5.317 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.741 3.259 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C -0.129 4.129 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.063 0.937 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.249 7.539 -19.945 23.658 hybrid contribution 0.859 -0.680 0.496 1.203 sum -9.390 6.858 -19.450 22.660 Atomic orbital electron populations 1.20767 0.91347 1.02801 1.01996 1.19812 0.95868 0.93055 0.99680 1.20840 0.93487 0.97354 1.02491 1.19826 0.93797 0.95164 0.99502 1.20776 1.00097 0.94098 1.02028 1.20825 0.99511 0.91448 1.00959 1.19243 0.93454 0.93578 0.99037 1.20740 1.01783 0.95954 0.95804 1.20326 0.78026 0.80490 0.90811 1.90733 1.50200 1.53284 1.45526 1.48052 1.56059 1.21864 1.07677 1.21800 0.95292 0.94462 0.89710 1.21977 0.95103 1.01528 0.98181 1.21439 1.01824 0.99283 0.92929 1.20739 0.91740 0.95690 0.86767 0.96624 1.22396 0.97919 0.97621 0.80752 0.90444 1.22953 0.99633 0.99193 0.94971 1.21749 0.86616 0.95443 0.91389 1.44094 1.28205 1.60839 0.98601 1.18934 1.01478 1.25501 0.89575 0.90452 1.24802 0.98743 1.00687 0.96131 1.69942 1.35518 1.46937 1.04295 0.86234 0.81739 0.79483 0.78492 1.21235 1.21624 1.21203 1.20790 0.93335 0.97480 1.01260 0.91402 0.91553 0.91660 0.86435 0.91372 0.91648 0.91445 0.86369 0.88297 0.88361 0.91543 0.90402 0.91832 0.90995 0.91521 0.91820 0.90022 0.92230 0.94348 0.92645 0.93686 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.58 16 2 C -0.08 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.37 9.36 -39.58 -0.37 -1.74 16 4 C -0.08 -0.95 5.88 -104.63 -0.62 -1.57 16 5 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 6 C -0.11 -1.36 9.36 -39.58 -0.37 -1.73 16 7 C -0.05 -0.66 4.37 -104.63 -0.46 -1.12 16 8 C -0.10 -1.14 4.25 -29.03 -0.12 -1.27 16 9 C 0.52 8.04 7.68 -10.98 -0.08 7.96 16 10 O -0.52 -10.24 12.87 5.55 0.07 -10.16 16 11 N -0.60 -9.25 2.91 -163.68 -0.48 -9.72 16 12 C 0.11 1.24 6.35 -3.20 -0.02 1.22 16 13 C -0.13 -1.57 5.94 -26.18 -0.16 -1.73 16 14 C -0.12 -1.97 5.45 -27.24 -0.15 -2.12 16 15 C 0.16 3.35 2.58 -68.34 -0.18 3.18 16 16 H 0.02 0.37 8.03 -51.93 -0.42 -0.05 16 17 C 0.12 2.25 3.32 -66.78 -0.22 2.03 16 18 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 19 C -0.13 -2.81 5.01 -25.20 -0.13 -2.94 16 20 C 0.17 4.44 5.47 -1.66 -0.01 4.43 16 21 N -0.59 -15.36 3.35 -163.21 -0.55 -15.90 16 22 C -0.23 -6.30 9.94 -15.06 -0.15 -6.45 16 23 H 0.08 2.05 7.31 -52.49 -0.38 1.67 16 24 C -0.01 -0.20 5.49 -17.44 -0.10 -0.30 16 25 N -0.92 -27.53 10.46 55.49 0.58 -26.95 16 26 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 30 C -0.11 -1.33 9.36 -39.58 -0.37 -1.70 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.52 8.09 -51.92 -0.42 0.10 16 37 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.10 0.91 7.71 -51.93 -0.40 0.51 16 40 H 0.10 0.85 7.95 -51.93 -0.41 0.44 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.64 6.18 -51.93 -0.32 0.31 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 46 H 0.06 1.09 8.12 -51.93 -0.42 0.66 16 47 H 0.08 1.88 6.21 -51.93 -0.32 1.55 16 48 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.04 1.09 7.81 -51.93 -0.41 0.68 16 50 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 51 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 52 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -33.56 402.20 -11.62 -45.18 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.90 Total: 0.92 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.39 Total: -6.63 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.44 Total: -52.58 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.56 -11.62 -45.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049693253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.421 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds