Wall clock time and date at job start Wed Apr 1 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47291 * 2 1 4 4 C 1.38234 * 120.00146 * 90.00324 * 3 2 1 5 5 C 1.38238 * 119.99974 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00341 * 359.96953 * 5 4 3 7 7 C 1.50693 * 120.00397 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47172 * 89.99868 * 7 6 5 9 9 O 1.21276 * 120.00244 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99951 * 179.97438 * 8 7 6 11 11 C 1.47859 * 122.23145 * 0.02562 * 10 8 7 12 12 C 1.52709 * 111.05846 * 232.51048 * 11 10 8 13 13 C 1.53876 * 111.52531 * 311.46338 * 12 11 10 14 14 C 1.51078 * 107.34046 * 56.92765 * 13 12 11 15 15 H 1.08997 * 108.74042 * 51.47730 * 14 13 12 16 16 C 1.45724 * 122.22918 * 180.02562 * 10 8 7 17 17 H 1.09001 * 111.07134 * 240.49358 * 16 10 8 18 18 C 1.53427 * 116.37790 * 9.00223 * 16 10 8 19 19 C 1.56411 * 101.24190 * 152.28568 * 18 16 10 20 20 N 1.45028 * 119.18736 * 176.12359 * 14 13 12 21 21 C 1.36943 * 126.55772 * 331.20896 * 20 14 13 22 22 H 1.08002 * 120.00424 * 359.97438 * 21 20 14 23 23 C 1.38817 * 119.99993 * 180.02562 * 21 20 14 24 24 N 1.31625 * 119.99896 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47363 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47128 * 120.00051 * 25 23 21 28 28 H 1.48505 * 109.47045 * 239.99716 * 25 23 21 29 29 C 1.38236 * 119.99737 * 0.28071 * 6 5 4 30 30 C 1.38235 * 119.99982 * 269.97808 * 3 2 1 31 31 H 1.09002 * 109.47298 * 300.00466 * 1 2 3 32 32 H 1.09003 * 109.47158 * 60.00141 * 1 2 3 33 33 H 1.09002 * 109.47518 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47298 * 239.99534 * 2 1 3 35 35 H 1.09003 * 109.47158 * 119.99859 * 2 1 3 36 36 H 1.07999 * 120.00010 * 359.97357 * 4 3 2 37 37 H 1.08008 * 119.99833 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46973 * 330.00055 * 7 6 5 39 39 H 1.08998 * 109.47170 * 210.00329 * 7 6 5 40 40 H 1.08997 * 109.16121 * 112.09676 * 11 10 8 41 41 H 1.09006 * 109.15920 * 352.91411 * 11 10 8 42 42 H 1.09003 * 109.06924 * 190.94118 * 12 11 10 43 43 H 1.08993 * 109.07493 * 71.99158 * 12 11 10 44 44 H 1.09003 * 109.87619 * 176.38374 * 13 12 11 45 45 H 1.08993 * 109.88532 * 297.46838 * 13 12 11 46 46 H 1.09007 * 110.98508 * 270.82867 * 18 16 10 47 47 H 1.08997 * 110.99146 * 34.63435 * 18 16 10 48 48 H 1.08999 * 110.32526 * 218.64375 * 19 18 16 49 49 H 1.09006 * 109.30798 * 97.63303 * 19 18 16 50 50 H 0.96991 * 120.00005 * 180.02562 * 24 23 21 51 51 H 1.08001 * 120.00029 * 179.72666 * 29 6 5 52 52 H 1.07999 * 119.99973 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4472 -0.0001 8 6 4.9660 5.4460 0.0006 9 8 5.5716 4.3952 0.0006 10 7 5.6408 6.6126 0.0002 11 6 4.9530 7.9215 -0.0004 12 6 5.4656 8.8102 -1.1316 13 6 7.0035 8.8484 -1.1669 14 6 7.4862 7.4233 -1.3026 15 1 6.9690 6.9566 -2.1408 16 6 7.0970 6.6682 0.0002 17 1 7.4695 7.1841 0.8852 18 6 7.8299 5.3375 -0.2142 19 6 9.1645 5.8262 -0.8673 20 7 8.9067 7.1684 -1.4463 21 6 9.8330 8.0061 -2.0079 22 1 9.5269 8.9653 -2.3988 23 6 11.1653 7.6221 -2.0758 24 7 11.5382 6.4530 -1.5999 25 14 12.4288 8.7652 -2.8412 26 1 11.7589 10.0097 -3.2968 27 1 13.4667 9.1015 -1.8337 28 1 13.0655 8.0929 -4.0022 29 6 2.7202 3.3769 -1.1972 30 6 2.2631 2.0722 -1.1971 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0824 1.5634 2.1324 37 1 2.9038 3.8848 2.1325 38 1 3.0957 5.9614 0.8897 39 1 3.0965 5.9611 -0.8903 40 1 5.1293 8.4188 0.9533 41 1 3.8820 7.7628 -0.1275 42 1 5.0875 9.8225 -0.9883 43 1 5.0970 8.4250 -2.0822 44 1 7.3400 9.4367 -2.0206 45 1 7.3849 9.2826 -0.2428 46 1 8.0095 4.8332 0.7354 47 1 7.2775 4.6932 -0.8982 48 1 9.4768 5.1367 -1.6517 49 1 9.9373 5.8928 -0.1015 50 1 12.4691 6.1848 -1.6470 51 1 2.8968 3.8872 -2.1325 52 1 2.0839 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049753830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:00 Heat of formation + Delta-G solvation = 14.322924 kcal Electronic energy + Delta-G solvation = -30366.378554 eV Core-core repulsion = 26524.034825 eV Total energy + Delta-G solvation = -3842.343729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.44626 -39.42977 -37.66362 -35.37567 -34.73336 -32.57005 -32.29907 -31.26393 -30.95534 -28.98873 -28.21763 -27.24166 -24.53441 -24.42372 -23.21997 -22.78792 -21.47824 -21.09480 -20.42415 -19.66943 -18.70679 -16.83138 -16.38300 -16.05238 -15.94559 -15.62212 -15.16968 -14.92762 -14.68387 -14.19175 -14.09730 -13.91924 -13.89338 -13.58988 -13.51610 -13.30477 -13.02839 -12.90028 -12.44453 -12.30351 -12.11768 -11.96930 -11.87199 -11.75205 -11.55787 -11.36449 -11.12438 -10.93804 -10.91340 -10.85020 -10.68567 -10.50395 -10.39879 -10.05685 -9.97108 -9.80504 -9.59669 -8.99403 -8.91821 -8.58957 -8.48308 -8.17674 -6.80089 -5.67801 -3.02102 1.27336 1.40728 2.88506 3.19281 3.41042 3.45942 3.48799 3.74589 4.50661 4.53608 4.65923 4.69711 4.71982 4.88652 4.90653 4.96059 5.08734 5.12943 5.21531 5.28487 5.31720 5.35249 5.39692 5.45870 5.46197 5.53898 5.62238 5.64782 5.67383 5.74722 5.78931 5.88360 5.89898 6.01872 6.02650 6.04569 6.10957 6.26723 6.30895 6.37232 6.41536 6.55892 6.57225 6.59378 6.75028 6.81477 6.93526 6.97999 7.22963 7.61299 7.68639 7.76537 7.87341 8.27482 8.49917 9.21640 9.85538 10.54218 11.44182 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.002454 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.208834 B =11408.610572 C =12261.849481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.064 4.064 7 C -0.103 4.103 8 C 0.516 3.484 9 O -0.522 6.522 10 N -0.603 5.603 11 C 0.110 3.890 12 C -0.130 4.130 13 C -0.116 4.116 14 C 0.159 3.841 15 H 0.017 0.983 16 C 0.118 3.882 17 H 0.076 0.924 18 C -0.130 4.130 19 C 0.173 3.827 20 N -0.593 5.593 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.101 4.101 30 C -0.116 4.116 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.039 0.961 49 H 0.054 0.946 50 H 0.252 0.748 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 -4.180 5.204 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.143 4.143 8 C 0.303 3.697 9 O -0.398 6.398 10 N -0.336 5.336 11 C -0.012 4.012 12 C -0.168 4.168 13 C -0.154 4.154 14 C 0.049 3.951 15 H 0.034 0.966 16 C 0.013 3.987 17 H 0.094 0.906 18 C -0.169 4.169 19 C 0.048 3.952 20 N -0.318 5.318 21 C -0.353 4.353 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.119 4.119 30 C -0.134 4.134 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.309 -4.766 5.148 24.342 hybrid contribution 0.838 0.787 -0.398 1.217 sum -22.471 -3.979 4.751 23.310 Atomic orbital electron populations 1.21743 0.94873 1.01524 1.02140 1.20532 0.95999 0.92887 1.02828 1.19845 0.99470 0.96044 0.93275 1.20922 1.00474 0.94762 0.97385 1.20927 0.98882 0.94902 0.97309 1.19273 0.98844 0.94823 0.93545 1.20736 0.93511 0.95358 1.04667 1.20341 0.89117 0.83383 0.76818 1.90726 1.69435 1.30835 1.48794 1.48052 1.07283 1.05231 1.73070 1.21701 0.96377 0.83789 0.99378 1.21899 0.97274 0.99113 0.98553 1.21428 0.93029 0.98630 1.02343 1.20765 0.87421 0.93072 0.93801 0.96589 1.22401 0.77450 0.99656 0.99161 0.90561 1.23123 0.97536 0.94869 1.01347 1.21898 0.91592 0.85357 0.96356 1.44103 1.01414 1.16768 1.69505 1.19031 0.87297 0.97683 1.31279 0.90318 1.24819 0.97113 0.97229 1.01352 1.69964 1.15904 1.19939 1.50852 0.86073 0.81677 0.79708 0.78468 1.20554 1.21806 1.21806 1.20962 0.98651 0.94897 0.97413 1.20941 1.00345 0.94730 0.97431 0.92623 0.92602 0.92547 0.91096 0.91133 0.86364 0.86383 0.88391 0.88322 0.91581 0.90403 0.90945 0.91850 0.91491 0.91795 0.92141 0.89899 0.94243 0.92746 0.93788 0.86282 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.15 0.37 -0.63 16 2 C -0.09 -0.70 6.06 -27.89 -0.17 -0.87 16 3 C -0.09 -0.92 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 5 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 6 C -0.06 -0.78 4.37 -104.63 -0.46 -1.24 16 7 C -0.10 -1.12 4.25 -29.04 -0.12 -1.24 16 8 C 0.52 7.97 7.69 -10.99 -0.08 7.89 16 9 O -0.52 -10.16 12.83 5.56 0.07 -10.09 16 10 N -0.60 -9.20 2.91 -163.97 -0.48 -9.68 16 11 C 0.11 1.24 6.32 -3.45 -0.02 1.21 16 12 C -0.13 -1.57 5.93 -26.42 -0.16 -1.73 16 13 C -0.12 -1.96 5.45 -27.24 -0.15 -2.11 16 14 C 0.16 3.32 2.59 -68.34 -0.18 3.14 16 15 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 16 C 0.12 2.25 3.28 -66.78 -0.22 2.03 16 17 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 18 C -0.13 -2.83 5.14 -24.68 -0.13 -2.95 16 19 C 0.17 4.44 5.49 -1.14 -0.01 4.43 16 20 N -0.59 -15.35 3.35 -162.62 -0.55 -15.89 16 21 C -0.22 -6.24 9.94 -15.05 -0.15 -6.39 16 22 H 0.08 2.09 7.31 -52.49 -0.38 1.71 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -27.53 10.46 55.49 0.58 -26.95 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 30 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.10 0.83 7.96 -51.93 -0.41 0.42 16 39 H 0.10 0.89 7.70 -51.93 -0.40 0.49 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 45 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 46 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 47 H 0.08 1.90 6.14 -51.93 -0.32 1.58 16 48 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 49 H 0.05 1.52 7.19 -51.93 -0.37 1.15 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 52 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -33.38 402.27 -11.88 -45.26 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.90 Total: 0.82 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -3.64 Total: -6.76 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.44 Total: -52.52 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.38 -11.88 -45.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049753830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.580 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds