Wall clock time and date at job start Wed Apr 1 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47153 * 2 1 4 4 C 1.38236 * 119.99721 * 90.00595 * 3 2 1 5 5 C 1.38242 * 120.00008 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99573 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99714 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47207 * 90.00009 * 7 6 5 9 9 O 1.21276 * 120.00131 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00065 * 180.02562 * 8 7 6 11 11 C 1.46799 * 119.57552 * 359.97438 * 10 8 7 12 12 C 1.53460 * 107.59823 * 232.04712 * 11 10 8 13 13 C 1.52733 * 108.61660 * 301.81856 * 12 11 10 14 14 C 1.53466 * 110.58445 * 63.62275 * 13 12 11 15 15 H 1.08996 * 112.01773 * 69.49603 * 14 13 12 16 16 C 1.45115 * 119.57561 * 179.97438 * 10 8 7 17 17 H 1.08995 * 109.97316 * 11.93775 * 16 10 8 18 18 C 1.54421 * 111.60801 * 248.65133 * 16 10 8 19 19 C 1.54562 * 102.44933 * 203.42690 * 18 16 10 20 20 N 1.47120 * 107.25621 * 21.66445 * 19 18 16 21 21 C 1.36939 * 125.76809 * 182.57845 * 20 19 18 22 22 H 1.08000 * 119.99778 * 180.02562 * 21 20 19 23 23 C 1.38807 * 120.00020 * 0.02942 * 21 20 19 24 24 N 1.31624 * 120.00577 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00181 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46815 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47322 * 119.99921 * 25 23 21 28 28 H 1.48503 * 109.47312 * 240.00020 * 25 23 21 29 29 C 1.38229 * 120.00471 * 0.24909 * 6 5 4 30 30 C 1.38233 * 120.00383 * 270.02045 * 3 2 1 31 31 H 1.09004 * 109.47297 * 59.99144 * 1 2 3 32 32 H 1.08998 * 109.47867 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46758 * 299.99897 * 1 2 3 34 34 H 1.09008 * 109.46758 * 240.00103 * 2 1 3 35 35 H 1.08996 * 109.47146 * 120.00577 * 2 1 3 36 36 H 1.07993 * 120.00217 * 359.97438 * 4 3 2 37 37 H 1.07997 * 120.00035 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.47147 * 330.00287 * 7 6 5 39 39 H 1.08997 * 109.46986 * 209.99983 * 7 6 5 40 40 H 1.09003 * 109.83221 * 112.52011 * 11 10 8 41 41 H 1.09004 * 109.88799 * 351.60459 * 11 10 8 42 42 H 1.09002 * 109.64150 * 61.61218 * 12 11 10 43 43 H 1.09002 * 109.64319 * 182.02957 * 12 11 10 44 44 H 1.09003 * 109.21357 * 184.21034 * 13 12 11 45 45 H 1.08993 * 109.21488 * 303.53314 * 13 12 11 46 46 H 1.09000 * 110.81193 * 321.66138 * 18 16 10 47 47 H 1.09002 * 110.81125 * 85.18687 * 18 16 10 48 48 H 1.09007 * 109.88425 * 262.25481 * 19 18 16 49 49 H 1.09000 * 110.02026 * 141.15485 * 19 18 16 50 50 H 0.96991 * 120.00793 * 180.02562 * 24 23 21 51 51 H 1.07999 * 120.00229 * 179.72799 * 29 6 5 52 52 H 1.07999 * 119.99863 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2628 2.0723 1.1972 5 6 2.7231 3.3758 1.1973 6 6 2.9534 4.0275 0.0001 7 6 3.4547 5.4487 0.0002 8 6 4.9617 5.4499 0.0007 9 8 5.5689 4.4001 0.0014 10 7 5.6347 6.6176 0.0013 11 6 4.8903 7.8829 0.0009 12 6 5.4313 8.7391 -1.1520 13 6 6.9297 8.9478 -0.9429 14 6 7.6758 7.6085 -1.0116 15 1 7.6828 7.1959 -2.0204 16 6 7.0858 6.6080 0.0023 17 1 7.4516 5.6033 -0.2094 18 6 7.6570 7.1267 1.3400 19 6 9.0707 7.6034 0.9362 20 7 9.0504 7.8499 -0.5141 21 6 10.1209 8.2373 -1.2751 22 1 10.0003 8.3931 -2.3370 23 6 11.3609 8.4298 -0.6818 24 7 11.5078 8.2405 0.6124 25 14 12.8214 8.9577 -1.7201 26 1 12.3959 9.1023 -3.1355 27 1 13.3375 10.2585 -1.2235 28 1 13.8916 7.9324 -1.6267 29 6 2.7185 3.3775 -1.1970 30 6 2.2624 2.0726 -1.1971 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.0825 1.5633 2.1324 37 1 2.9028 3.8850 2.1326 38 1 3.0907 5.9623 0.8900 39 1 3.0912 5.9621 -0.8900 40 1 5.0406 8.4006 0.9483 41 1 3.8284 7.6883 -0.1495 42 1 5.2612 8.2276 -2.0994 43 1 4.9246 9.7042 -1.1607 44 1 7.3100 9.6166 -1.7151 45 1 7.0960 9.3992 0.0351 46 1 7.0618 7.9575 1.7191 47 1 7.7142 6.3231 2.0742 48 1 9.8034 6.8311 1.1707 49 1 9.3196 8.5233 1.4652 50 1 12.3742 8.3754 1.0271 51 1 2.8943 3.8882 -2.1323 52 1 2.0817 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049753833.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:04 Heat of formation + Delta-G solvation = 7.441652 kcal Electronic energy + Delta-G solvation = -30158.607246 eV Core-core repulsion = 26315.965122 eV Total energy + Delta-G solvation = -3842.642123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.49527 -39.46583 -37.87610 -35.25090 -34.77367 -32.37728 -32.34144 -31.32222 -30.99007 -29.06480 -28.33256 -27.23638 -24.64715 -24.27678 -23.35699 -22.82263 -21.98022 -20.97583 -20.14676 -19.76632 -18.07663 -17.16140 -16.86981 -16.36703 -15.97702 -15.53052 -15.11182 -14.90476 -14.75432 -14.27486 -13.99977 -13.91770 -13.81890 -13.69987 -13.48119 -13.36760 -12.95682 -12.95209 -12.54840 -12.25126 -12.13366 -12.00462 -11.87375 -11.81007 -11.39941 -11.35931 -11.06604 -10.98001 -10.94830 -10.93877 -10.79100 -10.64416 -10.47212 -10.06778 -10.04295 -9.64323 -9.60727 -9.51067 -8.95271 -8.61968 -8.57006 -8.24278 -6.85207 -5.70618 -3.04732 1.23864 1.37304 2.80939 3.18263 3.40256 3.45810 3.48167 3.71936 4.48342 4.50492 4.62829 4.66611 4.72016 4.85873 4.92386 4.98995 5.10218 5.13417 5.18432 5.27942 5.29160 5.32103 5.39590 5.42468 5.49909 5.50983 5.59519 5.62548 5.65453 5.70258 5.71672 5.87000 5.88306 5.98996 6.00407 6.01454 6.11418 6.21921 6.31079 6.33832 6.37583 6.51937 6.52549 6.53784 6.61020 6.74601 6.94158 7.00418 7.07660 7.56059 7.60932 7.66617 7.83507 8.24073 8.41341 9.21125 9.80893 10.46907 11.40650 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.002268 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.802480 B =12340.864390 C =12780.455778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.102 4.102 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.595 5.595 11 C 0.106 3.894 12 C -0.133 4.133 13 C -0.129 4.129 14 C 0.155 3.845 15 H 0.058 0.942 16 C 0.132 3.868 17 H 0.100 0.900 18 C -0.151 4.151 19 C 0.180 3.820 20 N -0.598 5.598 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.051 0.949 49 H 0.041 0.959 50 H 0.252 0.748 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.288 -7.704 0.126 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.142 4.142 8 C 0.297 3.703 9 O -0.410 6.410 10 N -0.327 5.327 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.169 4.169 14 C 0.047 3.953 15 H 0.076 0.924 16 C 0.027 3.973 17 H 0.118 0.882 18 C -0.190 4.190 19 C 0.055 3.945 20 N -0.323 5.323 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.676 -8.213 0.164 25.061 hybrid contribution 0.953 0.551 -0.427 1.181 sum -22.723 -7.662 -0.263 23.981 Atomic orbital electron populations 1.21745 0.94842 1.01542 1.02160 1.20534 0.96029 0.92866 1.02821 1.19851 0.99440 0.96064 0.93277 1.20935 1.00405 0.94757 0.97420 1.20948 0.98767 0.94902 0.97371 1.19290 0.98901 0.94839 0.93574 1.20729 0.93200 0.95367 1.04859 1.20498 0.89448 0.83675 0.76646 1.90719 1.70001 1.31009 1.49233 1.47651 1.06890 1.05562 1.72593 1.21847 0.95366 0.84908 0.99600 1.21927 0.98105 0.99228 0.97963 1.22172 0.92365 1.00004 1.02337 1.21433 0.86353 0.91998 0.95545 0.92354 1.21750 0.77387 1.01319 0.96819 0.88153 1.23103 0.99819 0.99820 0.96306 1.21173 0.89749 0.99410 0.84158 1.44714 1.03613 1.79885 1.04075 1.19077 0.86658 1.38445 0.91146 0.90398 1.24803 0.97609 1.01980 0.96065 1.69966 1.23027 1.55184 1.08665 0.86051 0.82797 0.77802 0.79142 1.20531 1.21825 1.21770 1.20951 0.98775 0.94896 0.97376 1.20936 1.00410 0.94734 0.97426 0.92601 0.92534 0.92597 0.91115 0.91117 0.86312 0.86298 0.88175 0.88114 0.91249 0.90127 0.91856 0.91369 0.92142 0.91859 0.92312 0.92131 0.93101 0.94049 0.93798 0.86283 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.89 5.13 -104.63 -0.54 -1.42 16 4 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 6 C -0.07 -0.78 4.37 -104.63 -0.46 -1.23 16 7 C -0.10 -1.07 4.15 -29.03 -0.12 -1.19 16 8 C 0.51 7.73 7.65 -10.98 -0.08 7.64 16 9 O -0.53 -10.43 15.36 5.56 0.09 -10.34 16 10 N -0.59 -8.92 2.73 -165.04 -0.45 -9.37 16 11 C 0.11 1.20 6.05 -3.64 -0.02 1.18 16 12 C -0.13 -1.65 6.09 -26.63 -0.16 -1.81 16 13 C -0.13 -2.20 5.15 -26.63 -0.14 -2.34 16 14 C 0.16 3.16 3.59 -66.15 -0.24 2.92 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 16 C 0.13 2.48 3.10 -67.31 -0.21 2.28 16 17 H 0.10 2.19 6.96 -51.93 -0.36 1.83 16 18 C -0.15 -2.93 6.08 -25.17 -0.15 -3.09 16 19 C 0.18 4.39 5.20 -2.88 -0.01 4.37 16 20 N -0.60 -15.01 2.91 -161.98 -0.47 -15.48 16 21 C -0.22 -6.21 10.29 -15.06 -0.16 -6.36 16 22 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -27.09 10.33 55.49 0.57 -26.51 16 25 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 C -0.10 -1.17 9.70 -39.59 -0.38 -1.55 16 30 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.07 0.52 8.09 -51.92 -0.42 0.10 16 35 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.10 0.83 7.87 -51.93 -0.41 0.42 16 39 H 0.10 0.84 7.56 -51.93 -0.39 0.45 16 40 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 41 H 0.08 0.65 5.82 -51.93 -0.30 0.35 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.16 7.14 -51.93 -0.37 0.79 16 46 H 0.06 1.04 6.82 -51.93 -0.35 0.69 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.05 1.40 7.30 -51.93 -0.38 1.02 16 49 H 0.04 1.10 7.59 -51.93 -0.39 0.71 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 52 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -32.83 403.58 -11.74 -44.57 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.81 Total: 1.06 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.72 Total: -7.19 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.35 Total: -51.36 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.83 -11.74 -44.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049753833.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.015 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds