Wall clock time and date at job start Wed Apr 1 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47154 * 2 1 4 4 C 1.38240 * 120.00200 * 90.00052 * 3 2 1 5 5 C 1.38236 * 119.99873 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00221 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00120 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46990 * 89.99456 * 7 6 5 9 9 O 1.21277 * 120.00066 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99457 * 179.97438 * 8 7 6 11 11 C 1.46791 * 119.57637 * 0.02562 * 10 8 7 12 12 C 1.53468 * 107.59621 * 127.96031 * 11 10 8 13 13 C 1.52734 * 108.43626 * 58.07878 * 12 11 10 14 14 C 1.53013 * 110.80056 * 296.22217 * 13 12 11 15 15 H 1.08996 * 111.38360 * 290.28996 * 14 13 12 16 16 C 1.43582 * 119.25374 * 179.22681 * 10 8 7 17 17 H 1.08999 * 109.84058 * 347.94039 * 16 10 8 18 18 C 1.54420 * 110.88601 * 110.63011 * 16 10 8 19 19 C 1.54573 * 102.44917 * 157.25530 * 18 16 10 20 20 N 1.48208 * 107.11903 * 168.08331 * 14 13 12 21 21 C 1.36940 * 125.76733 * 88.25003 * 20 14 13 22 22 H 1.08000 * 119.99815 * 355.25197 * 21 20 14 23 23 C 1.38813 * 120.00023 * 175.26002 * 21 20 14 24 24 N 1.31622 * 119.99819 * 7.01988 * 23 21 20 25 25 Si 1.86791 * 119.99794 * 187.02202 * 23 21 20 26 26 H 1.48503 * 109.47412 * 94.98462 * 25 23 21 27 27 H 1.48502 * 109.47172 * 214.98401 * 25 23 21 28 28 H 1.48502 * 109.47267 * 334.98374 * 25 23 21 29 29 C 1.38240 * 119.99699 * 0.24696 * 6 5 4 30 30 C 1.38232 * 120.00116 * 359.49647 * 29 6 5 31 31 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46659 * 300.00202 * 1 2 3 33 33 H 1.08997 * 109.47008 * 60.00382 * 1 2 3 34 34 H 1.08997 * 109.47156 * 239.99969 * 2 1 3 35 35 H 1.09006 * 109.46837 * 119.99562 * 2 1 3 36 36 H 1.08001 * 119.99664 * 359.97438 * 4 3 2 37 37 H 1.08001 * 119.99872 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.46839 * 329.99491 * 7 6 5 39 39 H 1.08997 * 109.46989 * 209.99437 * 7 6 5 40 40 H 1.08998 * 109.83425 * 8.44217 * 11 10 8 41 41 H 1.09000 * 109.83318 * 247.48692 * 11 10 8 42 42 H 1.08995 * 109.64148 * 298.39128 * 12 11 10 43 43 H 1.08999 * 109.64158 * 177.76089 * 12 11 10 44 44 H 1.09003 * 109.21199 * 175.88132 * 13 12 11 45 45 H 1.09007 * 109.21178 * 56.56373 * 13 12 11 46 46 H 1.09004 * 110.81310 * 275.49542 * 18 16 10 47 47 H 1.09001 * 110.80821 * 38.81966 * 18 16 10 48 48 H 1.08997 * 109.88096 * 97.73819 * 19 18 16 49 49 H 1.08999 * 109.88370 * 218.75898 * 19 18 16 50 50 H 0.96998 * 119.99485 * 180.02562 * 24 23 21 51 51 H 1.08004 * 119.99464 * 179.73244 * 29 6 5 52 52 H 1.08005 * 119.99627 * 180.22683 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3760 1.1971 6 6 2.9524 4.0279 0.0000 7 6 3.4537 5.4491 -0.0001 8 6 4.9608 5.4503 -0.0006 9 8 5.5679 4.4004 -0.0014 10 7 5.6337 6.6181 -0.0013 11 6 4.8893 7.8832 -0.0009 12 6 5.4304 8.7396 1.1519 13 6 6.9292 8.9436 0.9399 14 6 7.6747 7.6093 1.0117 15 1 7.6809 7.2116 2.0265 16 6 7.0693 6.6006 0.0151 17 1 7.4245 5.5951 0.2405 18 6 7.6413 7.0926 -1.3322 19 6 9.0620 7.5590 -0.9407 20 7 9.0496 7.8504 0.5136 21 6 10.1162 8.2541 1.2716 22 1 9.9760 8.4983 2.3143 23 6 11.3775 8.3496 0.6999 24 7 11.5257 8.1871 -0.5979 25 14 12.8642 8.7085 1.7722 26 1 13.5211 7.4317 2.1513 27 1 13.8247 9.5548 1.0195 28 1 12.4290 9.4243 2.9983 29 6 2.7166 3.3781 -1.1972 30 6 2.2614 2.0729 -1.1971 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.0824 1.5635 2.1325 37 1 2.9027 3.8853 2.1324 38 1 3.0903 5.9625 0.8901 39 1 3.0896 5.9627 -0.8899 40 1 3.8277 7.6877 0.1504 41 1 5.0394 8.4009 -0.9483 42 1 5.2606 8.2281 2.0993 43 1 4.9264 9.7060 1.1584 44 1 7.3130 9.6109 1.7116 45 1 7.0949 9.3949 -0.0384 46 1 7.6866 6.2775 -2.0545 47 1 7.0521 7.9221 -1.7232 48 1 9.7848 6.7750 -1.1662 49 1 9.3177 8.4671 -1.4867 50 1 12.4072 8.2535 -0.9973 51 1 2.8917 3.8890 -2.1325 52 1 2.0807 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049753837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:08 Heat of formation + Delta-G solvation = 7.803383 kcal Electronic energy + Delta-G solvation = -30167.776851 eV Core-core repulsion = 26325.150413 eV Total energy + Delta-G solvation = -3842.626437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.56757 -39.48570 -37.85550 -35.21017 -34.77921 -32.43820 -32.34333 -31.33328 -30.99224 -29.06251 -28.35384 -27.23835 -24.63031 -24.28024 -23.34958 -22.82429 -22.00151 -20.97888 -20.16833 -19.79901 -18.06407 -17.19553 -16.85544 -16.36813 -15.98165 -15.52632 -15.10967 -14.91945 -14.74509 -14.28483 -14.00022 -13.92156 -13.82329 -13.70910 -13.48723 -13.37188 -12.97404 -12.95649 -12.55011 -12.26460 -12.13391 -11.99049 -11.87634 -11.81555 -11.40124 -11.32935 -11.05866 -10.98312 -10.95020 -10.94174 -10.80808 -10.64230 -10.48326 -10.08162 -10.06301 -9.63232 -9.59087 -9.51916 -8.95513 -8.60378 -8.57322 -8.23271 -6.84599 -5.72144 -3.04026 1.23615 1.37121 2.79338 3.20171 3.41267 3.46470 3.48138 3.71968 4.48425 4.50430 4.62612 4.65946 4.71245 4.85628 4.92148 4.98680 5.10058 5.12804 5.17847 5.27917 5.29061 5.31852 5.39150 5.42203 5.48756 5.50784 5.58002 5.62321 5.65198 5.70714 5.71512 5.86813 5.88272 5.98810 6.00065 6.01191 6.11291 6.23786 6.31492 6.33585 6.36604 6.52292 6.52946 6.53564 6.60434 6.75829 6.94003 7.01615 7.09530 7.53883 7.59221 7.65865 7.81472 8.21548 8.40991 9.18907 9.80182 10.48295 11.40578 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002287 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.892206 B =12240.706497 C =12719.398690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.102 4.102 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.591 5.591 11 C 0.105 3.895 12 C -0.134 4.134 13 C -0.129 4.129 14 C 0.155 3.845 15 H 0.056 0.944 16 C 0.130 3.870 17 H 0.100 0.900 18 C -0.151 4.151 19 C 0.178 3.822 20 N -0.598 5.598 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.042 0.958 50 H 0.252 0.748 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.409 -7.667 -0.183 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.141 4.141 8 C 0.297 3.703 9 O -0.409 6.409 10 N -0.323 5.323 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.170 4.170 14 C 0.047 3.953 15 H 0.074 0.926 16 C 0.025 3.975 17 H 0.118 0.882 18 C -0.190 4.190 19 C 0.053 3.947 20 N -0.323 5.323 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.790 -8.162 -0.234 25.152 hybrid contribution 0.986 0.429 0.471 1.174 sum -22.804 -7.733 0.237 24.081 Atomic orbital electron populations 1.21744 0.94841 1.01543 1.02160 1.20536 0.96029 0.92866 1.02821 1.19854 0.99432 0.96063 0.93277 1.20938 1.00390 0.94759 0.97426 1.20950 0.98747 0.94902 0.97382 1.19292 0.98920 0.94836 0.93575 1.20725 0.93165 0.95377 1.04878 1.20516 0.89495 0.83682 0.76645 1.90720 1.70006 1.30989 1.49136 1.47249 1.06832 1.05664 1.72561 1.21861 0.95374 0.84851 0.99650 1.21932 0.98115 0.99249 0.97943 1.22114 0.92374 1.00143 1.02336 1.21305 0.86590 0.91937 0.95511 0.92582 1.21422 0.77900 1.01405 0.96787 0.88173 1.23107 0.99688 0.99897 0.96351 1.21354 0.89761 0.99268 0.84278 1.44961 1.03856 1.78903 1.04534 1.19015 0.85476 1.37971 0.92857 0.90385 1.24812 0.97428 1.02094 0.96026 1.69961 1.21939 1.56015 1.08669 0.86134 0.82947 0.77596 0.79307 1.21639 1.21828 1.20668 1.20950 0.98792 0.94893 0.97365 1.20934 1.00429 0.94726 0.97421 0.92535 0.92600 0.92595 0.91115 0.91116 0.86305 0.86284 0.88094 0.88154 0.90103 0.91175 0.91837 0.91306 0.92218 0.91850 0.92160 0.92292 0.93248 0.93946 0.93748 0.86292 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.90 37.16 0.37 -0.59 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.88 5.13 -104.62 -0.54 -1.42 16 4 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 6 C -0.07 -0.78 4.37 -104.62 -0.46 -1.23 16 7 C -0.10 -1.07 4.15 -29.03 -0.12 -1.19 16 8 C 0.51 7.68 7.64 -10.98 -0.08 7.60 16 9 O -0.53 -10.38 15.31 5.56 0.09 -10.29 16 10 N -0.59 -8.84 2.67 -166.12 -0.44 -9.28 16 11 C 0.11 1.19 6.05 -3.64 -0.02 1.17 16 12 C -0.13 -1.65 6.11 -26.63 -0.16 -1.81 16 13 C -0.13 -2.22 5.11 -26.86 -0.14 -2.36 16 14 C 0.16 3.16 3.55 -66.37 -0.24 2.93 16 15 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 16 C 0.13 2.45 3.06 -68.12 -0.21 2.24 16 17 H 0.10 2.18 6.89 -51.93 -0.36 1.82 16 18 C -0.15 -2.93 6.06 -25.16 -0.15 -3.08 16 19 C 0.18 4.33 5.29 -2.21 -0.01 4.32 16 20 N -0.60 -15.03 2.96 -161.24 -0.48 -15.51 16 21 C -0.23 -6.22 10.29 -15.06 -0.15 -6.37 16 22 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 23 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 24 N -0.92 -27.07 10.48 55.49 0.58 -26.49 16 25 Si 0.91 22.23 29.56 -169.99 -5.02 17.20 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 30 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.10 0.84 7.56 -51.93 -0.39 0.44 16 39 H 0.10 0.83 7.87 -51.93 -0.41 0.42 16 40 H 0.08 0.65 5.82 -51.93 -0.30 0.35 16 41 H 0.07 0.78 7.54 -51.93 -0.39 0.39 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.16 7.25 -51.93 -0.38 0.79 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.06 1.04 6.87 -51.93 -0.36 0.69 16 48 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 49 H 0.04 1.12 7.65 -51.93 -0.40 0.73 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 52 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -32.91 403.84 -11.73 -44.64 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.83 Total: 0.93 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.72 Total: -7.29 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.34 Total: -51.28 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.91 -11.73 -44.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049753837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.445 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds