Wall clock time and date at job start Wed Apr 1 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47154 * 2 1 4 4 C 1.38240 * 120.00200 * 90.00052 * 3 2 1 5 5 C 1.38236 * 119.99873 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00221 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00120 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46990 * 89.99456 * 7 6 5 9 9 O 1.21277 * 120.00066 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99457 * 179.97438 * 8 7 6 11 11 C 1.46791 * 119.57637 * 0.02562 * 10 8 7 12 12 C 1.53468 * 107.59621 * 127.96031 * 11 10 8 13 13 C 1.52734 * 108.43626 * 58.07878 * 12 11 10 14 14 C 1.53013 * 110.80056 * 296.22217 * 13 12 11 15 15 H 1.08996 * 111.38360 * 290.28996 * 14 13 12 16 16 C 1.43582 * 119.25374 * 179.22681 * 10 8 7 17 17 H 1.08999 * 109.84058 * 347.94039 * 16 10 8 18 18 C 1.54420 * 110.88601 * 110.63011 * 16 10 8 19 19 C 1.54573 * 102.44917 * 157.25530 * 18 16 10 20 20 N 1.48208 * 107.11903 * 168.08331 * 14 13 12 21 21 C 1.36940 * 125.76733 * 88.25003 * 20 14 13 22 22 H 1.08000 * 119.99815 * 355.25197 * 21 20 14 23 23 C 1.38813 * 120.00023 * 175.26002 * 21 20 14 24 24 N 1.31622 * 119.99819 * 7.01988 * 23 21 20 25 25 Si 1.86791 * 119.99794 * 187.02202 * 23 21 20 26 26 H 1.48503 * 109.47412 * 94.98462 * 25 23 21 27 27 H 1.48502 * 109.47172 * 214.98401 * 25 23 21 28 28 H 1.48502 * 109.47267 * 334.98374 * 25 23 21 29 29 C 1.38240 * 119.99699 * 0.24696 * 6 5 4 30 30 C 1.38232 * 120.00116 * 359.49647 * 29 6 5 31 31 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46659 * 300.00202 * 1 2 3 33 33 H 1.08997 * 109.47008 * 60.00382 * 1 2 3 34 34 H 1.08997 * 109.47156 * 239.99969 * 2 1 3 35 35 H 1.09006 * 109.46837 * 119.99562 * 2 1 3 36 36 H 1.08001 * 119.99664 * 359.97438 * 4 3 2 37 37 H 1.08001 * 119.99872 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.46839 * 329.99491 * 7 6 5 39 39 H 1.08997 * 109.46989 * 209.99437 * 7 6 5 40 40 H 1.08998 * 109.83425 * 8.44217 * 11 10 8 41 41 H 1.09000 * 109.83318 * 247.48692 * 11 10 8 42 42 H 1.08995 * 109.64148 * 298.39128 * 12 11 10 43 43 H 1.08999 * 109.64158 * 177.76089 * 12 11 10 44 44 H 1.09003 * 109.21199 * 175.88132 * 13 12 11 45 45 H 1.09007 * 109.21178 * 56.56373 * 13 12 11 46 46 H 1.09004 * 110.81310 * 275.49542 * 18 16 10 47 47 H 1.09001 * 110.80821 * 38.81966 * 18 16 10 48 48 H 1.08997 * 109.88096 * 97.73819 * 19 18 16 49 49 H 1.08999 * 109.88370 * 218.75898 * 19 18 16 50 50 H 0.96998 * 119.99485 * 180.02562 * 24 23 21 51 51 H 1.08004 * 119.99464 * 179.73244 * 29 6 5 52 52 H 1.08005 * 119.99627 * 180.22683 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3760 1.1971 6 6 2.9524 4.0279 0.0000 7 6 3.4537 5.4491 -0.0001 8 6 4.9608 5.4503 -0.0006 9 8 5.5679 4.4004 -0.0014 10 7 5.6337 6.6181 -0.0013 11 6 4.8893 7.8832 -0.0009 12 6 5.4304 8.7396 1.1519 13 6 6.9292 8.9436 0.9399 14 6 7.6747 7.6093 1.0117 15 1 7.6809 7.2116 2.0265 16 6 7.0693 6.6006 0.0151 17 1 7.4245 5.5951 0.2405 18 6 7.6413 7.0926 -1.3322 19 6 9.0620 7.5590 -0.9407 20 7 9.0496 7.8504 0.5136 21 6 10.1162 8.2541 1.2716 22 1 9.9760 8.4983 2.3143 23 6 11.3775 8.3496 0.6999 24 7 11.5257 8.1871 -0.5979 25 14 12.8642 8.7085 1.7722 26 1 13.5211 7.4317 2.1513 27 1 13.8247 9.5548 1.0195 28 1 12.4290 9.4243 2.9983 29 6 2.7166 3.3781 -1.1972 30 6 2.2614 2.0729 -1.1971 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.0824 1.5635 2.1325 37 1 2.9027 3.8853 2.1324 38 1 3.0903 5.9625 0.8901 39 1 3.0896 5.9627 -0.8899 40 1 3.8277 7.6877 0.1504 41 1 5.0394 8.4009 -0.9483 42 1 5.2606 8.2281 2.0993 43 1 4.9264 9.7060 1.1584 44 1 7.3130 9.6109 1.7116 45 1 7.0949 9.3949 -0.0384 46 1 7.6866 6.2775 -2.0545 47 1 7.0521 7.9221 -1.7232 48 1 9.7848 6.7750 -1.1662 49 1 9.3177 8.4671 -1.4867 50 1 12.4072 8.2535 -0.9973 51 1 2.8917 3.8890 -2.1325 52 1 2.0807 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049753837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:07 Heat of formation + Delta-G solvation = -9.234175 kcal Electronic energy + Delta-G solvation = -30168.515655 eV Core-core repulsion = 26325.150413 eV Total energy + Delta-G solvation = -3843.365241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.80480 -40.40304 -39.22114 -36.71989 -35.52300 -34.20026 -33.74431 -32.25888 -31.76756 -30.81956 -29.82771 -28.19753 -26.31661 -25.74554 -24.16229 -23.60769 -23.26511 -22.08965 -21.80918 -20.98181 -19.42326 -18.75084 -18.35899 -17.27988 -16.82821 -16.80243 -16.60448 -16.16484 -15.92989 -15.87898 -15.11069 -15.06781 -14.94735 -14.58344 -14.54105 -14.33186 -14.16941 -14.08175 -13.77788 -13.69565 -13.50943 -13.09517 -12.94259 -12.90628 -12.79679 -12.62362 -12.51053 -12.33448 -12.27943 -12.05556 -12.03444 -11.92721 -11.67806 -11.62955 -11.62138 -11.50641 -11.17399 -10.78912 -10.72584 -9.75381 -9.55732 -9.37159 -8.89998 -7.87811 -5.21250 0.43381 0.57142 1.43007 1.45954 1.54058 1.65867 2.05095 2.48312 2.89097 3.31333 3.52159 3.64342 3.75854 3.87152 3.92916 3.96868 4.03355 4.09190 4.14621 4.18242 4.21369 4.23311 4.37792 4.50141 4.52329 4.58432 4.58992 4.63369 4.65868 4.68343 4.75860 4.80296 4.84591 4.86328 4.98667 5.07793 5.09970 5.10333 5.19473 5.23078 5.26495 5.38172 5.39222 5.40290 5.55202 5.55758 5.62334 5.69832 5.71321 5.72306 5.77185 6.14845 6.17736 6.50078 7.04884 7.24618 7.71984 8.40564 9.24028 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002287 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.892206 B =12240.706497 C =12719.398690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.090 4.090 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.590 5.590 11 C 0.101 3.899 12 C -0.124 4.124 13 C -0.119 4.119 14 C 0.150 3.850 15 H 0.044 0.956 16 C 0.148 3.852 17 H 0.063 0.937 18 C -0.133 4.133 19 C 0.189 3.811 20 N -0.619 5.619 21 C -0.233 4.233 22 H 0.082 0.918 23 C -0.068 4.068 24 N -0.950 5.950 25 Si 0.976 3.024 26 H -0.292 1.292 27 H -0.294 1.294 28 H -0.265 1.265 29 C -0.116 4.116 30 C -0.130 4.130 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.006 0.994 49 H 0.013 0.987 50 H 0.246 0.754 51 H 0.129 0.871 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.852 -6.964 0.473 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.129 4.129 8 C 0.297 3.703 9 O -0.465 6.465 10 N -0.321 5.321 11 C -0.020 4.020 12 C -0.162 4.162 13 C -0.159 4.159 14 C 0.043 3.957 15 H 0.062 0.938 16 C 0.041 3.959 17 H 0.081 0.919 18 C -0.172 4.172 19 C 0.064 3.936 20 N -0.345 5.345 21 C -0.362 4.362 22 H 0.100 0.900 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.804 3.196 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.190 1.190 29 C -0.134 4.134 30 C -0.148 4.148 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.024 0.976 49 H 0.031 0.969 50 H 0.056 0.944 51 H 0.147 0.853 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -27.305 -7.433 0.447 28.303 hybrid contribution 2.036 0.142 0.295 2.062 sum -25.270 -7.291 0.742 26.311 Atomic orbital electron populations 1.21711 0.93759 1.02379 1.02022 1.20585 0.96914 0.91522 1.03239 1.20179 0.98869 0.97132 0.93131 1.21218 1.00407 0.94895 0.98307 1.21213 0.98958 0.95436 0.97893 1.19514 0.99455 0.95784 0.93717 1.20780 0.88829 0.95447 1.07845 1.21403 0.91413 0.82581 0.74922 1.90706 1.71469 1.32939 1.51350 1.47300 1.04927 1.07554 1.72317 1.22250 0.97350 0.82708 0.99714 1.21900 0.94103 1.01505 0.98694 1.21902 0.95850 0.97016 1.01167 1.21520 0.84905 0.94272 0.95040 0.93821 1.20835 0.80912 0.98695 0.95470 0.91909 1.22917 0.96735 1.00676 0.96861 1.21048 0.91942 0.96510 0.84135 1.45222 1.05513 1.78836 1.04890 1.19380 0.86542 1.37025 0.93291 0.89993 1.25653 1.00213 1.02937 0.97272 1.70173 1.21913 1.57603 1.10235 0.85091 0.79256 0.77136 0.78078 1.21888 1.22063 1.18992 1.21218 0.98933 0.95409 0.97881 1.21219 1.00407 0.94869 0.98298 0.91220 0.92742 0.92712 0.90690 0.90727 0.84942 0.85418 0.84959 0.84943 0.85261 0.90119 0.91325 0.87790 0.93610 0.93068 0.91899 0.89687 0.97552 0.96868 0.94443 0.85322 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.90 71.98 0.71 -0.90 16 2 C -0.09 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.80 5.13 -19.87 -0.10 -1.90 16 4 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 5 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 6 C -0.08 -1.81 4.37 -19.87 -0.09 -1.89 16 7 C -0.09 -1.54 4.15 29.10 0.12 -1.41 16 8 C 0.51 14.23 7.64 87.66 0.67 14.90 16 9 O -0.58 -22.83 15.31 -3.02 -0.05 -22.88 16 10 N -0.59 -16.25 2.67 -797.86 -2.13 -18.38 16 11 C 0.10 1.79 6.05 86.48 0.52 2.31 16 12 C -0.12 -2.54 6.11 30.66 0.19 -2.35 16 13 C -0.12 -3.94 5.11 30.51 0.16 -3.78 16 14 C 0.15 6.17 3.55 45.07 0.16 6.33 16 15 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 16 C 0.15 5.59 3.06 46.41 0.14 5.74 16 17 H 0.06 2.86 6.89 -2.39 -0.02 2.85 16 18 C -0.13 -5.20 6.06 31.61 0.19 -5.01 16 19 C 0.19 9.69 5.29 86.56 0.46 10.15 16 20 N -0.62 -32.38 2.96 -664.04 -1.96 -34.34 16 21 C -0.23 -13.32 10.29 84.03 0.86 -12.45 16 22 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 23 C -0.07 -3.95 5.48 84.86 0.47 -3.49 16 24 N -0.95 -58.69 10.48 21.65 0.23 -58.46 16 25 Si 0.98 46.93 29.56 68.60 2.03 48.95 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 30 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 36 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.13 1.46 7.56 -2.39 -0.02 1.44 16 39 H 0.13 1.45 7.87 -2.39 -0.02 1.43 16 40 H 0.13 1.16 5.82 -2.39 -0.01 1.14 16 41 H 0.08 1.36 7.54 -2.39 -0.02 1.34 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.05 1.81 7.25 -2.38 -0.02 1.79 16 46 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.08 2.89 6.87 -2.39 -0.02 2.87 16 48 H 0.01 0.36 7.37 -2.39 -0.02 0.35 16 49 H 0.01 0.74 7.65 -2.39 -0.02 0.72 16 50 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 51 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 52 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -77.87 403.84 4.50 -73.37 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.88 Total: 15.86 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.51 Total: -4.12 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.87 Total: -111.19 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -77.87 4.50 -73.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049753837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.135 kcal (2) G-P(sol) polarization free energy of solvation -77.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds