Wall clock time and date at job start Wed Apr 1 2020 01:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38243 * 119.99604 * 2 1 4 4 C 1.38235 * 119.99602 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.38235 * 119.99899 * 359.95697 * 5 4 3 7 7 C 1.50703 * 120.00293 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00317 * 179.88287 * 2 1 3 9 9 C 1.50701 * 119.99906 * 0.04581 * 8 2 1 10 10 C 1.50692 * 109.47242 * 269.93472 * 9 8 2 11 11 O 1.21283 * 120.00141 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00190 * 180.02562 * 10 9 8 13 13 C 1.46795 * 119.52171 * 359.71669 * 12 10 9 14 14 C 1.54223 * 106.91124 * 233.40258 * 13 12 10 15 15 C 1.52723 * 107.75680 * 300.46573 * 14 13 12 16 16 C 1.52965 * 110.88187 * 64.74696 * 15 14 13 17 17 H 1.08998 * 111.91761 * 70.38148 * 16 15 14 18 18 C 1.55028 * 107.60338 * 194.03170 * 16 15 14 19 19 N 1.47099 * 107.12560 * 92.90021 * 18 16 15 20 20 C 1.36940 * 125.64483 * 180.15996 * 19 18 16 21 21 H 1.08004 * 120.00370 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99824 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00047 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99936 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47044 * 59.99792 * 24 22 20 26 26 H 1.48495 * 109.47273 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47100 * 300.00263 * 24 22 20 28 28 C 1.48097 * 108.91354 * 0.55443 * 19 18 16 29 29 C 1.45019 * 119.52467 * 179.97438 * 12 10 9 30 30 H 1.08999 * 109.86546 * 12.05599 * 29 12 10 31 31 H 1.09001 * 109.47060 * 90.00349 * 1 2 3 32 32 H 1.08998 * 109.46941 * 210.00293 * 1 2 3 33 33 H 1.08998 * 109.47482 * 330.00442 * 1 2 3 34 34 H 1.08000 * 119.99728 * 0.24800 * 3 2 1 35 35 H 1.08000 * 119.99297 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.00371 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46764 * 89.99876 * 7 6 5 38 38 H 1.08993 * 109.47236 * 209.99737 * 7 6 5 39 39 H 1.09003 * 109.46896 * 330.00284 * 7 6 5 40 40 H 1.09009 * 109.47217 * 29.93273 * 9 8 2 41 41 H 1.09000 * 109.46819 * 149.92759 * 9 8 2 42 42 H 1.09000 * 109.84226 * 351.51952 * 13 12 10 43 43 H 1.08998 * 109.84229 * 112.49232 * 13 12 10 44 44 H 1.08993 * 109.24095 * 181.36502 * 14 13 12 45 45 H 1.09006 * 110.77357 * 60.44134 * 14 13 12 46 46 H 1.08999 * 109.19710 * 304.38822 * 15 14 13 47 47 H 1.08994 * 109.16029 * 185.08518 * 15 14 13 48 48 H 1.08995 * 109.91003 * 212.28035 * 18 16 15 49 49 H 1.09009 * 109.90186 * 333.34890 * 18 16 15 50 50 H 0.96997 * 119.99779 * 179.97438 * 23 22 20 51 51 H 1.09006 * 110.24266 * 264.31362 * 28 19 18 52 52 H 1.09002 * 110.86154 * 141.63251 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0002 0.0016 6 6 3.5806 -1.1970 0.0030 7 6 4.3341 -2.5021 0.0048 8 6 2.1983 -1.1971 0.0024 9 6 1.4448 -2.5022 0.0041 10 6 1.1941 -2.9357 1.4253 11 8 1.5888 -2.2525 2.3464 12 7 0.5321 -4.0833 1.6731 13 6 0.0545 -4.8997 0.5504 14 6 -1.4515 -5.1402 0.7794 15 6 -1.6101 -5.8610 2.1164 16 6 -1.1520 -4.9712 3.2732 17 1 -1.8367 -4.1403 3.4433 18 6 -1.0026 -5.8714 4.5265 19 7 0.3988 -6.3157 4.5761 20 6 0.9439 -7.1318 5.5311 21 1 0.3293 -7.5062 6.3364 22 6 2.2865 -7.4780 5.4641 23 7 3.0357 -7.0214 4.4829 24 14 3.0299 -8.5919 6.7664 25 1 2.3222 -9.8975 6.7637 26 1 4.4690 -8.8078 6.4703 27 1 2.8897 -7.9555 8.1008 28 6 1.1293 -5.7289 3.4292 29 6 0.2970 -4.4909 3.0448 30 1 0.5253 -3.6666 3.7204 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6581 2.1325 0.0040 35 1 4.1204 2.1326 0.0001 36 1 5.3518 0.0002 0.0016 37 1 4.5156 -2.8154 1.0329 38 1 3.7451 -3.2624 -0.5081 39 1 5.2866 -2.3724 -0.5091 40 1 0.4922 -2.3725 -0.5096 41 1 2.0338 -3.2623 -0.5092 42 1 0.1888 -4.3569 -0.3852 43 1 0.6052 -5.8397 0.5160 44 1 -1.8415 -5.7658 -0.0234 45 1 -1.9944 -4.1953 0.8051 46 1 -1.0113 -6.7717 2.1059 47 1 -2.6584 -6.1232 2.2593 48 1 -1.2433 -5.3014 5.4238 49 1 -1.6653 -6.7331 4.4455 50 1 3.9739 -7.2631 4.4364 51 1 1.1630 -6.4372 2.6013 52 1 2.1374 -5.4343 3.7208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050057161.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:24 Heat of formation + Delta-G solvation = 12.129479 kcal Electronic energy + Delta-G solvation = -31403.937312 eV Core-core repulsion = 27561.498469 eV Total energy + Delta-G solvation = -3842.438844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.54908 -39.48112 -37.70527 -35.23142 -33.56456 -33.35099 -32.78316 -31.84934 -29.59966 -28.81325 -27.40969 -26.62768 -26.28741 -25.48017 -23.80115 -22.08217 -21.46208 -20.67011 -20.17916 -19.60469 -17.96827 -17.08125 -16.88060 -16.23602 -16.15968 -15.34868 -14.89337 -14.64806 -14.50733 -14.26217 -14.03169 -13.89077 -13.39139 -13.31925 -13.17969 -13.04093 -12.91046 -12.76517 -12.68626 -12.44148 -12.25745 -12.09888 -11.92623 -11.61692 -11.56622 -11.46490 -11.10263 -11.05999 -10.87574 -10.82223 -10.75585 -10.66281 -10.30369 -10.23588 -9.87034 -9.72733 -9.65531 -9.39074 -8.62139 -8.50457 -8.47259 -8.07668 -6.81850 -5.63641 -3.05224 1.39268 1.44325 2.97698 3.33661 3.42219 3.46359 3.47641 3.81246 4.50965 4.63336 4.76716 4.78524 4.90740 4.97079 5.01373 5.07791 5.14657 5.18322 5.28605 5.32648 5.36757 5.46542 5.48481 5.53163 5.54835 5.62184 5.66074 5.67236 5.71006 5.79894 5.82828 5.91971 5.94830 5.98511 6.09162 6.12789 6.17505 6.24337 6.28612 6.31299 6.44274 6.52606 6.57952 6.65741 6.70931 6.72546 6.93033 7.00961 7.08442 7.45872 7.63163 7.81378 7.90268 8.34247 8.58962 9.21888 9.83502 10.47577 11.40547 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003443 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.789072 B = 8131.139708 C = 9487.255097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.063 4.063 7 C -0.121 4.121 8 C -0.063 4.063 9 C -0.107 4.107 10 C 0.513 3.487 11 O -0.530 6.530 12 N -0.591 5.591 13 C 0.104 3.896 14 C -0.131 4.131 15 C -0.110 4.110 16 C -0.108 4.108 17 H 0.074 0.926 18 C 0.141 3.859 19 N -0.603 5.603 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.160 3.840 29 C 0.116 3.884 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.022 0.978 49 H 0.027 0.973 50 H 0.252 0.748 51 H 0.015 0.985 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 11.588 -15.560 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.063 4.063 7 C -0.177 4.177 8 C -0.063 4.063 9 C -0.146 4.146 10 C 0.300 3.700 11 O -0.406 6.406 12 N -0.323 5.323 13 C -0.019 4.019 14 C -0.169 4.169 15 C -0.148 4.148 16 C -0.127 4.127 17 H 0.092 0.908 18 C 0.014 3.986 19 N -0.330 5.330 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.034 3.966 29 C 0.012 3.988 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.040 0.960 49 H 0.044 0.956 50 H 0.063 0.937 51 H 0.033 0.967 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.824 11.825 -14.995 19.697 hybrid contribution 0.352 -0.678 0.701 1.037 sum -4.472 11.148 -14.294 18.670 Atomic orbital electron populations 1.20814 0.91546 1.03040 1.01805 1.19656 0.95753 0.92560 0.98912 1.20897 0.94245 0.97123 1.02460 1.21038 0.94280 0.97760 1.00316 1.20932 0.99550 0.91946 1.02103 1.19717 0.92999 0.95536 0.98089 1.20895 0.99460 0.94114 1.03220 1.18993 0.92804 0.93202 1.01344 1.20795 1.01736 0.96288 0.95825 1.20379 0.78121 0.80736 0.90792 1.90717 1.50121 1.53609 1.46160 1.47441 1.55895 1.21891 1.07052 1.22021 0.94735 0.96383 0.88756 1.22010 0.95601 1.00987 0.98290 1.21480 1.00903 0.99107 0.93261 1.22418 0.96566 0.97605 0.96157 0.90777 1.21489 0.88249 0.94786 0.94028 1.44526 1.03599 1.56390 1.28449 1.19029 0.92973 1.20690 1.02619 0.90467 1.24781 0.96355 1.00816 0.98508 1.69815 1.06418 1.48403 1.32241 0.86165 0.78173 0.80253 0.80969 1.21246 1.21586 1.21146 1.22008 0.97094 0.88791 0.88677 1.22020 0.95126 1.00461 0.81205 0.88752 0.91285 0.91550 0.91537 0.86415 0.86386 0.86282 0.90357 0.91437 0.91649 0.88321 0.87910 0.90381 0.90444 0.91211 0.91658 0.90890 0.92431 0.96038 0.95550 0.93713 0.96713 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.20 36.01 0.33 -0.88 16 2 C -0.07 -0.88 5.88 -104.62 -0.62 -1.50 16 3 C -0.13 -1.53 9.70 -39.58 -0.38 -1.92 16 4 C -0.12 -1.35 10.05 -39.59 -0.40 -1.74 16 5 C -0.13 -1.58 9.70 -39.59 -0.38 -1.97 16 6 C -0.06 -0.86 5.88 -104.62 -0.62 -1.48 16 7 C -0.12 -1.50 9.61 36.01 0.35 -1.16 16 8 C -0.06 -0.86 4.37 -104.62 -0.46 -1.32 16 9 C -0.11 -1.34 3.05 -29.04 -0.09 -1.42 16 10 C 0.51 8.64 7.25 -10.99 -0.08 8.56 16 11 O -0.53 -11.28 15.35 5.55 0.09 -11.20 16 12 N -0.59 -9.76 2.72 -164.77 -0.45 -10.20 16 13 C 0.10 1.32 6.11 -3.24 -0.02 1.30 16 14 C -0.13 -1.52 6.15 -26.23 -0.16 -1.68 16 15 C -0.11 -1.62 4.67 -26.89 -0.13 -1.75 16 16 C -0.11 -1.89 3.56 -88.86 -0.32 -2.20 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 18 C 0.14 2.95 6.64 -2.64 -0.02 2.94 16 19 N -0.60 -15.53 3.41 -169.55 -0.58 -16.11 16 20 C -0.22 -6.32 10.27 -15.06 -0.15 -6.48 16 21 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -27.15 10.10 55.49 0.56 -26.59 16 24 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.16 3.92 5.07 -2.62 -0.01 3.90 16 29 C 0.12 2.34 3.01 -67.47 -0.20 2.13 16 30 H 0.09 2.17 6.95 -51.93 -0.36 1.81 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.77 6.36 -51.93 -0.33 0.43 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 39 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.10 0.98 6.15 -51.92 -0.32 0.66 16 41 H 0.10 1.12 5.75 -51.93 -0.30 0.82 16 42 H 0.08 0.73 5.81 -51.93 -0.30 0.43 16 43 H 0.08 1.06 7.62 -51.93 -0.40 0.66 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.26 7.30 -51.93 -0.38 0.88 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.03 0.54 7.77 -51.92 -0.40 0.14 16 50 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.01 0.38 7.00 -51.93 -0.36 0.02 16 52 H 0.10 2.99 5.98 -51.93 -0.31 2.68 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -33.46 394.22 -11.30 -44.76 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.39 Total: 3.12 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -3.45 Total: -7.02 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.47 Total: -52.91 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.46 -11.30 -44.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050057161.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.890 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds