Wall clock time and date at job start Wed Apr 1 2020 01:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38243 * 119.99604 * 2 1 4 4 C 1.38235 * 119.99602 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.38235 * 119.99899 * 359.95697 * 5 4 3 7 7 C 1.50703 * 120.00293 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00317 * 179.88287 * 2 1 3 9 9 C 1.50701 * 119.99906 * 0.04581 * 8 2 1 10 10 C 1.50692 * 109.47242 * 269.93472 * 9 8 2 11 11 O 1.21283 * 120.00141 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00190 * 180.02562 * 10 9 8 13 13 C 1.46795 * 119.52171 * 359.71669 * 12 10 9 14 14 C 1.54223 * 106.91124 * 233.40258 * 13 12 10 15 15 C 1.52723 * 107.75680 * 300.46573 * 14 13 12 16 16 C 1.52965 * 110.88187 * 64.74696 * 15 14 13 17 17 H 1.08998 * 111.91761 * 70.38148 * 16 15 14 18 18 C 1.55028 * 107.60338 * 194.03170 * 16 15 14 19 19 N 1.47099 * 107.12560 * 92.90021 * 18 16 15 20 20 C 1.36940 * 125.64483 * 180.15996 * 19 18 16 21 21 H 1.08004 * 120.00370 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99824 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00047 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99936 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47044 * 59.99792 * 24 22 20 26 26 H 1.48495 * 109.47273 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47100 * 300.00263 * 24 22 20 28 28 C 1.48097 * 108.91354 * 0.55443 * 19 18 16 29 29 C 1.45019 * 119.52467 * 179.97438 * 12 10 9 30 30 H 1.08999 * 109.86546 * 12.05599 * 29 12 10 31 31 H 1.09001 * 109.47060 * 90.00349 * 1 2 3 32 32 H 1.08998 * 109.46941 * 210.00293 * 1 2 3 33 33 H 1.08998 * 109.47482 * 330.00442 * 1 2 3 34 34 H 1.08000 * 119.99728 * 0.24800 * 3 2 1 35 35 H 1.08000 * 119.99297 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.00371 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46764 * 89.99876 * 7 6 5 38 38 H 1.08993 * 109.47236 * 209.99737 * 7 6 5 39 39 H 1.09003 * 109.46896 * 330.00284 * 7 6 5 40 40 H 1.09009 * 109.47217 * 29.93273 * 9 8 2 41 41 H 1.09000 * 109.46819 * 149.92759 * 9 8 2 42 42 H 1.09000 * 109.84226 * 351.51952 * 13 12 10 43 43 H 1.08998 * 109.84229 * 112.49232 * 13 12 10 44 44 H 1.08993 * 109.24095 * 181.36502 * 14 13 12 45 45 H 1.09006 * 110.77357 * 60.44134 * 14 13 12 46 46 H 1.08999 * 109.19710 * 304.38822 * 15 14 13 47 47 H 1.08994 * 109.16029 * 185.08518 * 15 14 13 48 48 H 1.08995 * 109.91003 * 212.28035 * 18 16 15 49 49 H 1.09009 * 109.90186 * 333.34890 * 18 16 15 50 50 H 0.96997 * 119.99779 * 179.97438 * 23 22 20 51 51 H 1.09006 * 110.24266 * 264.31362 * 28 19 18 52 52 H 1.09002 * 110.86154 * 141.63251 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0002 0.0016 6 6 3.5806 -1.1970 0.0030 7 6 4.3341 -2.5021 0.0048 8 6 2.1983 -1.1971 0.0024 9 6 1.4448 -2.5022 0.0041 10 6 1.1941 -2.9357 1.4253 11 8 1.5888 -2.2525 2.3464 12 7 0.5321 -4.0833 1.6731 13 6 0.0545 -4.8997 0.5504 14 6 -1.4515 -5.1402 0.7794 15 6 -1.6101 -5.8610 2.1164 16 6 -1.1520 -4.9712 3.2732 17 1 -1.8367 -4.1403 3.4433 18 6 -1.0026 -5.8714 4.5265 19 7 0.3988 -6.3157 4.5761 20 6 0.9439 -7.1318 5.5311 21 1 0.3293 -7.5062 6.3364 22 6 2.2865 -7.4780 5.4641 23 7 3.0357 -7.0214 4.4829 24 14 3.0299 -8.5919 6.7664 25 1 2.3222 -9.8975 6.7637 26 1 4.4690 -8.8078 6.4703 27 1 2.8897 -7.9555 8.1008 28 6 1.1293 -5.7289 3.4292 29 6 0.2970 -4.4909 3.0448 30 1 0.5253 -3.6666 3.7204 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6581 2.1325 0.0040 35 1 4.1204 2.1326 0.0001 36 1 5.3518 0.0002 0.0016 37 1 4.5156 -2.8154 1.0329 38 1 3.7451 -3.2624 -0.5081 39 1 5.2866 -2.3724 -0.5091 40 1 0.4922 -2.3725 -0.5096 41 1 2.0338 -3.2623 -0.5092 42 1 0.1888 -4.3569 -0.3852 43 1 0.6052 -5.8397 0.5160 44 1 -1.8415 -5.7658 -0.0234 45 1 -1.9944 -4.1953 0.8051 46 1 -1.0113 -6.7717 2.1059 47 1 -2.6584 -6.1232 2.2593 48 1 -1.2433 -5.3014 5.4238 49 1 -1.6653 -6.7331 4.4455 50 1 3.9739 -7.2631 4.4364 51 1 1.1630 -6.4372 2.6013 52 1 2.1374 -5.4343 3.7208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050057161.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:23 Heat of formation + Delta-G solvation = -6.242590 kcal Electronic energy + Delta-G solvation = -31404.733985 eV Core-core repulsion = 27561.498469 eV Total energy + Delta-G solvation = -3843.235516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.81775 -40.60189 -39.13884 -36.80821 -34.67616 -34.46648 -34.13165 -33.40464 -31.26408 -30.01882 -28.87544 -27.52746 -27.48302 -27.07772 -25.39351 -23.37792 -22.63673 -21.89152 -21.58395 -20.88517 -19.31152 -18.93012 -18.34127 -17.30234 -17.21991 -16.82959 -16.54815 -16.02625 -15.80847 -15.50480 -15.22404 -15.14667 -14.75379 -14.57600 -14.46576 -14.06033 -13.96396 -13.86412 -13.79788 -13.76256 -13.55623 -13.52130 -13.21192 -13.09510 -13.07502 -12.74880 -12.50327 -12.39994 -12.34981 -12.19745 -12.09023 -11.77951 -11.76170 -11.70360 -11.60057 -11.45716 -11.15731 -10.78762 -10.74225 -9.53364 -9.46428 -9.39522 -8.90104 -7.80148 -5.24951 0.44597 0.51053 1.42827 1.46941 1.53136 1.67453 2.06618 2.47858 2.84938 3.30197 3.57923 3.65336 3.71264 3.82820 3.89782 3.99431 4.02021 4.04916 4.09692 4.12005 4.21548 4.22415 4.38983 4.47160 4.48818 4.55605 4.56650 4.59682 4.72580 4.76849 4.78061 4.82011 4.85212 4.85611 4.93520 4.96148 4.98608 5.01740 5.11644 5.18937 5.28492 5.31974 5.36569 5.40120 5.48647 5.54879 5.61707 5.65119 5.68288 5.77996 5.81646 6.18617 6.22650 6.53096 7.04891 7.27330 7.73467 8.37575 9.21605 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003443 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.789072 B = 8131.139708 C = 9487.255097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.143 4.143 6 C -0.086 4.086 7 C -0.117 4.117 8 C -0.086 4.086 9 C -0.095 4.095 10 C 0.509 3.491 11 O -0.584 6.584 12 N -0.591 5.591 13 C 0.095 3.905 14 C -0.120 4.120 15 C -0.107 4.107 16 C -0.092 4.092 17 H 0.098 0.902 18 C 0.133 3.867 19 N -0.626 5.626 20 C -0.243 4.243 21 H 0.083 0.917 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.981 3.019 25 H -0.273 1.273 26 H -0.294 1.294 27 H -0.279 1.279 28 C 0.175 3.825 29 C 0.131 3.869 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.082 0.918 48 H 0.018 0.982 49 H 0.038 0.962 50 H 0.245 0.755 51 H -0.001 1.001 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 12.302 -17.826 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.156 4.156 4 C -0.138 4.138 5 C -0.160 4.160 6 C -0.087 4.087 7 C -0.174 4.174 8 C -0.086 4.086 9 C -0.134 4.134 10 C 0.299 3.701 11 O -0.464 6.464 12 N -0.322 5.322 13 C -0.026 4.026 14 C -0.158 4.158 15 C -0.144 4.144 16 C -0.112 4.112 17 H 0.117 0.883 18 C 0.008 3.992 19 N -0.352 5.352 20 C -0.371 4.371 21 H 0.101 0.899 22 C -0.259 4.259 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.199 1.199 26 H -0.220 1.220 27 H -0.205 1.205 28 C 0.049 3.951 29 C 0.025 3.975 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.036 0.964 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.017 0.983 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.117 12.526 -17.290 22.505 hybrid contribution 1.069 -0.854 1.452 1.995 sum -6.048 11.671 -15.838 20.583 Atomic orbital electron populations 1.20845 0.89918 1.02785 1.03390 1.20042 0.97187 0.92577 0.98418 1.21264 0.94608 0.97905 1.01871 1.21401 0.94639 0.98477 0.99300 1.21223 1.00501 0.92100 1.02222 1.19974 0.93586 0.96155 0.98938 1.20861 1.00749 0.94300 1.01459 1.19227 0.93052 0.94056 1.02289 1.20800 1.03661 0.96293 0.92634 1.21217 0.76652 0.80058 0.92223 1.90689 1.52086 1.55347 1.48242 1.47537 1.55845 1.22345 1.06464 1.22376 0.95578 0.95799 0.88870 1.22009 0.94559 1.02073 0.97141 1.21453 1.01559 0.97452 0.93957 1.22396 0.95026 0.98005 0.95755 0.88348 1.21718 0.85890 0.95716 0.95855 1.44818 1.05863 1.56295 1.28262 1.19450 0.93513 1.20884 1.03298 0.89925 1.25661 0.96858 1.02631 1.00728 1.70116 1.06099 1.49596 1.33998 0.85119 0.76880 0.78737 0.78403 1.19908 1.22010 1.20513 1.21579 0.95518 0.90185 0.87828 1.21427 0.96133 0.96810 0.83110 0.92517 0.88624 0.92636 0.90949 0.84177 0.83953 0.84956 0.93640 0.90470 0.89726 0.84852 0.86274 0.86129 0.91945 0.87724 0.89850 0.93917 0.89906 0.96398 0.94417 0.94529 0.98321 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.20 71.24 0.66 -1.42 16 2 C -0.08 -1.97 5.88 -19.86 -0.12 -2.09 16 3 C -0.14 -3.05 9.70 22.27 0.22 -2.84 16 4 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 5 C -0.14 -3.49 9.70 22.27 0.22 -3.27 16 6 C -0.09 -2.35 5.88 -19.87 -0.12 -2.47 16 7 C -0.12 -3.00 9.61 71.24 0.68 -2.32 16 8 C -0.09 -2.28 4.37 -19.87 -0.09 -2.36 16 9 C -0.09 -2.21 3.05 29.10 0.09 -2.12 16 10 C 0.51 17.22 7.25 87.65 0.64 17.86 16 11 O -0.58 -26.04 15.35 -3.04 -0.05 -26.09 16 12 N -0.59 -19.41 2.72 -793.59 -2.15 -21.56 16 13 C 0.10 2.18 6.11 86.74 0.53 2.71 16 14 C -0.12 -2.29 6.15 30.92 0.19 -2.10 16 15 C -0.11 -2.89 4.67 30.49 0.14 -2.74 16 16 C -0.09 -3.16 3.56 -9.65 -0.03 -3.19 16 17 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 18 C 0.13 5.65 6.64 86.96 0.58 6.23 16 19 N -0.63 -33.59 3.41 -690.34 -2.36 -35.94 16 20 C -0.24 -14.11 10.27 84.03 0.86 -13.24 16 21 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 22 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 23 N -0.95 -59.04 10.10 21.65 0.22 -58.82 16 24 Si 0.98 47.17 29.55 68.60 2.03 49.19 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 28 C 0.18 9.10 5.07 86.43 0.44 9.54 16 29 C 0.13 5.46 3.01 46.08 0.14 5.60 16 30 H 0.06 2.78 6.95 -2.39 -0.02 2.76 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.14 6.36 -2.39 -0.02 1.13 16 33 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 34 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 35 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.74 5.95 -2.39 -0.01 1.72 16 39 H 0.08 1.74 8.09 -2.39 -0.02 1.73 16 40 H 0.13 2.14 6.15 -2.38 -0.01 2.12 16 41 H 0.12 2.36 5.75 -2.39 -0.01 2.35 16 42 H 0.12 1.75 5.81 -2.39 -0.01 1.73 16 43 H 0.06 1.65 7.62 -2.39 -0.02 1.63 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.04 1.43 7.30 -2.39 -0.02 1.41 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.04 1.52 7.77 -2.38 -0.02 1.50 16 50 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 51 H 0.00 -0.06 7.00 -2.38 -0.02 -0.08 16 52 H 0.05 3.25 5.98 -2.39 -0.01 3.24 16 Total: -1.00 -79.98 394.22 4.31 -75.67 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.91 Total: 21.63 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.71 Total: -4.08 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -4.29 Total: -116.33 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -79.98 4.31 -75.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050057161.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.427 kcal (2) G-P(sol) polarization free energy of solvation -79.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds