Wall clock time and date at job start Wed Apr 1 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47174 * 2 1 4 4 C 1.38253 * 119.99774 * 265.18493 * 3 2 1 5 5 C 1.38215 * 119.99930 * 180.23202 * 4 3 2 6 6 C 1.38261 * 119.99772 * 359.80856 * 5 4 3 7 7 C 1.38215 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.38210 * 119.99902 * 84.99621 * 3 2 1 9 9 C 1.50694 * 120.00574 * 359.97438 * 8 3 2 10 10 C 1.50707 * 109.46879 * 84.72486 * 9 8 3 11 11 O 1.21280 * 120.00039 * 359.73112 * 10 9 8 12 12 N 1.34777 * 120.00019 * 180.02562 * 10 9 8 13 13 C 1.44514 * 116.63291 * 353.96664 * 12 10 9 14 14 C 1.51628 * 112.65656 * 154.59866 * 13 12 10 15 15 C 1.51327 * 111.97877 * 42.75686 * 14 13 12 16 16 C 1.50709 * 113.55050 * 304.61400 * 15 14 13 17 17 H 1.08994 * 109.33790 * 169.06383 * 16 15 14 18 18 C 1.54182 * 110.50449 * 289.39417 * 16 15 14 19 19 N 1.46928 * 106.26321 * 151.09784 * 18 16 15 20 20 C 1.36934 * 125.37499 * 162.11574 * 19 18 16 21 21 H 1.08002 * 120.00706 * 359.97438 * 20 19 18 22 22 C 1.38821 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99451 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00233 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47152 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47162 * 120.00052 * 24 22 20 27 27 H 1.48500 * 109.46929 * 240.00106 * 24 22 20 28 28 C 1.46811 * 109.24681 * 342.14304 * 19 18 16 29 29 C 1.44101 * 116.63226 * 173.70879 * 12 10 9 30 30 H 1.08997 * 109.10691 * 73.86885 * 29 12 10 31 31 H 1.09005 * 109.46480 * 60.00096 * 1 2 3 32 32 H 1.08998 * 109.46802 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47335 * 300.00596 * 1 2 3 34 34 H 1.08998 * 109.47500 * 239.99755 * 2 1 3 35 35 H 1.09007 * 109.46652 * 119.99384 * 2 1 3 36 36 H 1.08001 * 120.00325 * 0.02562 * 4 3 2 37 37 H 1.07994 * 120.00250 * 179.79307 * 5 4 3 38 38 H 1.07998 * 119.99869 * 179.97438 * 6 5 4 39 39 H 1.08000 * 119.99714 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.46990 * 324.73139 * 9 8 3 41 41 H 1.09000 * 109.47594 * 204.72778 * 9 8 3 42 42 H 1.09001 * 108.84552 * 275.42173 * 13 12 10 43 43 H 1.09009 * 108.84139 * 33.78024 * 13 12 10 44 44 H 1.08994 * 108.97721 * 163.40202 * 14 13 12 45 45 H 1.09000 * 108.98049 * 282.20037 * 14 13 12 46 46 H 1.09003 * 108.66528 * 65.66230 * 15 14 13 47 47 H 1.09000 * 108.66878 * 183.69621 * 15 14 13 48 48 H 1.09003 * 110.09286 * 270.29137 * 18 16 15 49 49 H 1.08998 * 110.10318 * 31.83460 * 18 16 15 50 50 H 0.97005 * 119.99517 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.84408 * 120.40627 * 28 19 18 52 52 H 1.09004 * 109.84330 * 241.31466 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3576 2.0390 -1.1931 5 6 2.8229 3.3405 -1.1927 6 6 2.9593 4.0255 0.0005 7 6 2.6310 3.4086 1.1929 8 6 2.1643 2.1071 1.1924 9 6 1.8053 1.4350 2.4925 10 6 2.9820 0.6321 2.9845 11 8 4.0090 0.6041 2.3401 12 7 2.8909 -0.0597 4.1376 13 6 1.6840 0.1256 4.9106 14 6 1.3719 -1.0621 5.8000 15 6 2.6095 -1.5936 6.4899 16 6 3.7203 -1.9568 5.5383 17 1 4.6334 -2.1432 6.1036 18 6 3.3519 -3.2201 4.7349 19 7 4.0504 -3.1072 3.4473 20 6 4.2862 -4.1404 2.5800 21 1 3.9486 -5.1371 2.8228 22 6 4.9592 -3.9066 1.3886 23 7 5.3711 -2.6920 1.0929 24 14 5.2815 -5.3161 0.2058 25 1 4.7220 -6.5716 0.7678 26 1 4.6332 -5.0260 -1.0983 27 1 6.7450 -5.4709 0.0075 28 6 4.4562 -1.7120 3.2376 29 6 4.0045 -0.9120 4.4692 30 1 4.8420 -0.2946 4.7938 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8898 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.2512 1.5039 -2.1252 37 1 3.0800 3.8223 -2.1244 38 1 3.3233 5.0423 0.0008 39 1 2.7380 3.9435 2.1250 40 1 0.9536 0.7730 2.3361 41 1 1.5464 2.1915 3.2333 42 1 1.7979 1.0123 5.5342 43 1 0.8491 0.2829 4.2275 44 1 0.6476 -0.7584 6.5558 45 1 0.9379 -1.8559 5.1922 46 1 2.9765 -0.8351 7.1813 47 1 2.3369 -2.4817 7.0601 48 1 3.6860 -4.1119 5.2653 49 1 2.2744 -3.2615 4.5752 50 1 5.8411 -2.5286 0.2602 51 1 5.5396 -1.6536 3.1322 52 1 3.9758 -1.3175 2.3422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050074570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:17 Heat of formation + Delta-G solvation = 20.540501 kcal Electronic energy + Delta-G solvation = -32202.480499 eV Core-core repulsion = 28360.406385 eV Total energy + Delta-G solvation = -3842.074114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.66172 -39.31355 -37.46504 -35.40126 -34.06035 -33.13109 -32.44511 -31.88578 -29.67952 -29.27279 -27.93397 -26.53581 -25.58928 -24.00948 -23.57289 -22.30431 -21.78956 -20.84360 -20.16270 -19.18653 -17.80490 -17.02918 -16.41781 -16.25448 -15.96050 -15.51277 -15.13125 -14.84557 -14.45160 -14.22608 -13.99562 -13.70988 -13.67013 -13.45623 -13.26051 -12.98887 -12.82649 -12.73165 -12.46789 -12.24347 -12.08343 -11.85977 -11.53245 -11.42283 -11.31289 -11.09686 -10.96971 -10.93341 -10.75579 -10.60331 -10.52191 -10.42933 -10.25089 -10.14390 -9.96526 -9.84000 -9.57712 -9.02106 -8.54895 -8.43596 -8.30071 -7.88990 -6.65384 -5.53710 -2.90458 1.57825 1.65791 3.17525 3.45793 3.50525 3.51804 3.53891 4.02852 4.59376 4.82555 4.82747 4.93166 4.98651 5.02166 5.12355 5.16351 5.18838 5.29690 5.32688 5.41450 5.45171 5.51380 5.58077 5.61501 5.65244 5.70917 5.75871 5.79666 5.86490 5.88713 5.95278 6.01773 6.10458 6.11362 6.19214 6.24590 6.25280 6.26510 6.35751 6.50284 6.58997 6.64050 6.70062 6.72482 6.76099 6.84167 6.95001 7.20113 7.25631 7.67651 7.85513 7.91489 8.15018 8.43974 8.81204 9.35916 9.96948 10.61815 11.54056 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.005244 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.841169 B = 5338.544002 C = 7381.752516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.051 4.051 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.130 4.130 7 C -0.107 4.107 8 C -0.060 4.060 9 C -0.105 4.105 10 C 0.499 3.501 11 O -0.492 6.492 12 N -0.593 5.593 13 C 0.116 3.884 14 C -0.128 4.128 15 C -0.101 4.101 16 C -0.102 4.102 17 H 0.078 0.922 18 C 0.143 3.857 19 N -0.607 5.607 20 C -0.234 4.234 21 H 0.075 0.925 22 C -0.004 4.004 23 N -0.904 5.904 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.171 3.829 29 C 0.132 3.868 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.030 0.970 49 H 0.014 0.986 50 H 0.251 0.749 51 H 0.050 0.950 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.756 11.931 5.417 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.051 4.051 4 C -0.136 4.136 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.125 4.125 8 C -0.060 4.060 9 C -0.145 4.145 10 C 0.285 3.715 11 O -0.365 6.365 12 N -0.328 5.328 13 C -0.008 4.008 14 C -0.165 4.165 15 C -0.139 4.139 16 C -0.122 4.122 17 H 0.097 0.903 18 C 0.016 3.984 19 N -0.334 5.334 20 C -0.363 4.363 21 H 0.093 0.907 22 C -0.202 4.202 23 N -0.551 5.551 24 Si 0.735 3.265 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.046 3.954 29 C 0.029 3.971 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.049 0.951 49 H 0.032 0.968 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.065 11.855 4.908 16.943 hybrid contribution 0.305 -0.778 -0.554 1.003 sum -10.760 11.076 4.354 16.044 Atomic orbital electron populations 1.21744 0.95160 1.01687 1.01433 1.20582 0.95304 0.92631 1.04318 1.19704 0.97377 0.95554 0.92490 1.20980 1.00129 0.95049 0.97478 1.21039 1.00071 0.94917 0.97835 1.20972 1.01409 0.99770 0.92637 1.20892 0.99114 0.94579 0.97877 1.19138 0.99803 0.93824 0.93244 1.20835 0.98340 0.99728 0.95610 1.20407 0.89526 0.80613 0.80956 1.90835 1.30330 1.60485 1.54888 1.46739 1.18789 1.44709 1.22560 1.20771 0.87254 0.97946 0.94781 1.21113 0.98338 0.98114 0.98975 1.20477 0.94958 1.00753 0.97713 1.21312 0.98618 0.96657 0.95628 0.90345 1.21362 0.95201 0.94123 0.87683 1.44398 1.65965 1.05572 1.17459 1.18993 1.31536 0.88018 0.97729 0.90734 1.24828 1.00787 0.96501 0.98066 1.70032 1.42837 1.17941 1.24242 0.86166 0.77597 0.81438 0.81287 1.20663 1.21882 1.21849 1.21657 0.99187 0.81548 0.92983 1.21031 0.86386 0.91309 0.98412 0.92747 0.92871 0.92292 0.92917 0.90885 0.90129 0.86385 0.86560 0.86559 0.86587 0.88148 0.88874 0.93027 0.91135 0.90930 0.91166 0.92557 0.91619 0.95146 0.96810 0.93849 0.93208 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.72 37.16 0.36 -1.46 16 2 C -0.09 -1.50 5.38 -27.88 -0.15 -1.65 16 3 C -0.05 -0.83 5.13 -104.63 -0.54 -1.36 16 4 C -0.12 -1.77 9.68 -39.58 -0.38 -2.15 16 5 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 6 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 7 C -0.11 -1.50 9.68 -39.58 -0.38 -1.88 16 8 C -0.06 -0.92 4.37 -104.63 -0.46 -1.38 16 9 C -0.11 -1.48 3.51 -29.03 -0.10 -1.58 16 10 C 0.50 9.21 5.95 -10.98 -0.07 9.15 16 11 O -0.49 -11.57 13.35 5.56 0.07 -11.49 16 12 N -0.59 -10.15 3.09 -170.32 -0.53 -10.67 16 13 C 0.12 1.43 5.70 -5.80 -0.03 1.40 16 14 C -0.13 -1.48 5.83 -28.27 -0.16 -1.65 16 15 C -0.10 -1.30 5.17 -28.72 -0.15 -1.45 16 16 C -0.10 -1.78 3.05 -91.58 -0.28 -2.06 16 17 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 18 C 0.14 2.99 6.65 -3.19 -0.02 2.97 16 19 N -0.61 -16.01 3.39 -171.51 -0.58 -16.59 16 20 C -0.23 -6.74 10.26 -15.06 -0.15 -6.89 16 21 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 22 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 23 N -0.90 -27.86 10.26 55.49 0.57 -27.29 16 24 Si 0.90 22.85 29.55 -169.99 -5.02 17.83 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 28 C 0.17 4.42 4.13 -3.53 -0.01 4.40 16 29 C 0.13 2.65 3.09 -69.30 -0.21 2.44 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.60 6.79 -51.93 -0.35 0.25 16 34 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 35 H 0.08 1.58 6.40 -51.93 -0.33 1.25 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.10 1.30 4.88 -51.93 -0.25 1.04 16 41 H 0.09 1.01 7.82 -51.93 -0.41 0.61 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.75 6.07 -51.92 -0.32 0.44 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.91 6.99 -51.93 -0.36 0.55 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.01 0.29 6.69 -51.93 -0.35 -0.05 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 51 H 0.05 1.49 7.37 -51.93 -0.38 1.11 16 52 H 0.08 2.25 4.70 -51.93 -0.24 2.01 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -34.70 391.25 -11.69 -46.38 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.46 Total: 3.46 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -3.64 Total: -7.52 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.54 Total: -54.56 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.70 -11.69 -46.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050074570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.922 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds