Wall clock time and date at job start Wed Apr 1 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47174 * 2 1 4 4 C 1.38253 * 119.99774 * 265.18493 * 3 2 1 5 5 C 1.38215 * 119.99930 * 180.23202 * 4 3 2 6 6 C 1.38261 * 119.99772 * 359.80856 * 5 4 3 7 7 C 1.38215 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.38210 * 119.99902 * 84.99621 * 3 2 1 9 9 C 1.50694 * 120.00574 * 359.97438 * 8 3 2 10 10 C 1.50707 * 109.46879 * 84.72486 * 9 8 3 11 11 O 1.21280 * 120.00039 * 359.73112 * 10 9 8 12 12 N 1.34777 * 120.00019 * 180.02562 * 10 9 8 13 13 C 1.44514 * 116.63291 * 353.96664 * 12 10 9 14 14 C 1.51628 * 112.65656 * 154.59866 * 13 12 10 15 15 C 1.51327 * 111.97877 * 42.75686 * 14 13 12 16 16 C 1.50709 * 113.55050 * 304.61400 * 15 14 13 17 17 H 1.08994 * 109.33790 * 169.06383 * 16 15 14 18 18 C 1.54182 * 110.50449 * 289.39417 * 16 15 14 19 19 N 1.46928 * 106.26321 * 151.09784 * 18 16 15 20 20 C 1.36934 * 125.37499 * 162.11574 * 19 18 16 21 21 H 1.08002 * 120.00706 * 359.97438 * 20 19 18 22 22 C 1.38821 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99451 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00233 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47152 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47162 * 120.00052 * 24 22 20 27 27 H 1.48500 * 109.46929 * 240.00106 * 24 22 20 28 28 C 1.46811 * 109.24681 * 342.14304 * 19 18 16 29 29 C 1.44101 * 116.63226 * 173.70879 * 12 10 9 30 30 H 1.08997 * 109.10691 * 73.86885 * 29 12 10 31 31 H 1.09005 * 109.46480 * 60.00096 * 1 2 3 32 32 H 1.08998 * 109.46802 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47335 * 300.00596 * 1 2 3 34 34 H 1.08998 * 109.47500 * 239.99755 * 2 1 3 35 35 H 1.09007 * 109.46652 * 119.99384 * 2 1 3 36 36 H 1.08001 * 120.00325 * 0.02562 * 4 3 2 37 37 H 1.07994 * 120.00250 * 179.79307 * 5 4 3 38 38 H 1.07998 * 119.99869 * 179.97438 * 6 5 4 39 39 H 1.08000 * 119.99714 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.46990 * 324.73139 * 9 8 3 41 41 H 1.09000 * 109.47594 * 204.72778 * 9 8 3 42 42 H 1.09001 * 108.84552 * 275.42173 * 13 12 10 43 43 H 1.09009 * 108.84139 * 33.78024 * 13 12 10 44 44 H 1.08994 * 108.97721 * 163.40202 * 14 13 12 45 45 H 1.09000 * 108.98049 * 282.20037 * 14 13 12 46 46 H 1.09003 * 108.66528 * 65.66230 * 15 14 13 47 47 H 1.09000 * 108.66878 * 183.69621 * 15 14 13 48 48 H 1.09003 * 110.09286 * 270.29137 * 18 16 15 49 49 H 1.08998 * 110.10318 * 31.83460 * 18 16 15 50 50 H 0.97005 * 119.99517 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.84408 * 120.40627 * 28 19 18 52 52 H 1.09004 * 109.84330 * 241.31466 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3576 2.0390 -1.1931 5 6 2.8229 3.3405 -1.1927 6 6 2.9593 4.0255 0.0005 7 6 2.6310 3.4086 1.1929 8 6 2.1643 2.1071 1.1924 9 6 1.8053 1.4350 2.4925 10 6 2.9820 0.6321 2.9845 11 8 4.0090 0.6041 2.3401 12 7 2.8909 -0.0597 4.1376 13 6 1.6840 0.1256 4.9106 14 6 1.3719 -1.0621 5.8000 15 6 2.6095 -1.5936 6.4899 16 6 3.7203 -1.9568 5.5383 17 1 4.6334 -2.1432 6.1036 18 6 3.3519 -3.2201 4.7349 19 7 4.0504 -3.1072 3.4473 20 6 4.2862 -4.1404 2.5800 21 1 3.9486 -5.1371 2.8228 22 6 4.9592 -3.9066 1.3886 23 7 5.3711 -2.6920 1.0929 24 14 5.2815 -5.3161 0.2058 25 1 4.7220 -6.5716 0.7678 26 1 4.6332 -5.0260 -1.0983 27 1 6.7450 -5.4709 0.0075 28 6 4.4562 -1.7120 3.2376 29 6 4.0045 -0.9120 4.4692 30 1 4.8420 -0.2946 4.7938 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8898 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.2512 1.5039 -2.1252 37 1 3.0800 3.8223 -2.1244 38 1 3.3233 5.0423 0.0008 39 1 2.7380 3.9435 2.1250 40 1 0.9536 0.7730 2.3361 41 1 1.5464 2.1915 3.2333 42 1 1.7979 1.0123 5.5342 43 1 0.8491 0.2829 4.2275 44 1 0.6476 -0.7584 6.5558 45 1 0.9379 -1.8559 5.1922 46 1 2.9765 -0.8351 7.1813 47 1 2.3369 -2.4817 7.0601 48 1 3.6860 -4.1119 5.2653 49 1 2.2744 -3.2615 4.5752 50 1 5.8411 -2.5286 0.2602 51 1 5.5396 -1.6536 3.1322 52 1 3.9758 -1.3175 2.3422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050074570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:15 Heat of formation + Delta-G solvation = 0.033161 kcal Electronic energy + Delta-G solvation = -32203.369764 eV Core-core repulsion = 28360.406385 eV Total energy + Delta-G solvation = -3842.963380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.04898 -40.50283 -38.93514 -37.00243 -35.22275 -34.68285 -33.82208 -33.39701 -31.45729 -30.38900 -29.29108 -28.02392 -27.29544 -25.54243 -24.72901 -23.56095 -23.12656 -22.41689 -21.53831 -20.53546 -19.28388 -18.73907 -17.93033 -17.41754 -17.29467 -16.95575 -16.68349 -16.21164 -15.82097 -15.73010 -15.55036 -15.07645 -14.93926 -14.63630 -14.41351 -14.27518 -14.12091 -13.96130 -13.89324 -13.74294 -13.61590 -13.10407 -12.97244 -12.92521 -12.81569 -12.66030 -12.62052 -12.40891 -12.15489 -12.05685 -11.91146 -11.75793 -11.70512 -11.58304 -11.51034 -11.41954 -11.31092 -10.77588 -10.41539 -9.65103 -9.45152 -9.32277 -8.82797 -7.78229 -5.17991 0.47012 0.55083 1.38973 1.40977 1.51363 1.79162 2.22471 2.47645 2.91151 3.35104 3.57611 3.68611 3.73717 3.84531 3.88316 3.93237 4.03508 4.07902 4.09322 4.12581 4.15752 4.28910 4.34960 4.44698 4.49164 4.55951 4.64471 4.66166 4.71369 4.73297 4.73920 4.79021 4.86990 4.94574 4.99804 5.01683 5.07174 5.15351 5.18421 5.22087 5.25417 5.36175 5.40442 5.45368 5.50183 5.55563 5.61549 5.64372 5.79976 5.85717 6.09216 6.18201 6.26515 6.57690 7.10373 7.43794 7.82637 8.44996 9.26949 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.005244 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.841169 B = 5338.544002 C = 7381.752516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C -0.076 4.076 4 C -0.139 4.139 5 C -0.124 4.124 6 C -0.133 4.133 7 C -0.114 4.114 8 C -0.078 4.078 9 C -0.093 4.093 10 C 0.491 3.509 11 O -0.557 6.557 12 N -0.592 5.592 13 C 0.101 3.899 14 C -0.125 4.125 15 C -0.097 4.097 16 C -0.089 4.089 17 H 0.079 0.921 18 C 0.137 3.863 19 N -0.630 5.630 20 C -0.244 4.244 21 H 0.082 0.918 22 C -0.066 4.066 23 N -0.936 5.936 24 Si 0.972 3.028 25 H -0.261 1.261 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.187 3.813 29 C 0.145 3.855 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.035 0.965 49 H 0.025 0.975 50 H 0.239 0.761 51 H -0.012 1.012 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 13.280 7.774 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.157 4.157 5 C -0.142 4.142 6 C -0.150 4.150 7 C -0.132 4.132 8 C -0.078 4.078 9 C -0.132 4.132 10 C 0.279 3.721 11 O -0.434 6.434 12 N -0.325 5.325 13 C -0.020 4.020 14 C -0.163 4.163 15 C -0.135 4.135 16 C -0.109 4.109 17 H 0.097 0.903 18 C 0.012 3.988 19 N -0.356 5.356 20 C -0.374 4.374 21 H 0.100 0.900 22 C -0.260 4.260 23 N -0.585 5.585 24 Si 0.801 3.199 25 H -0.185 1.185 26 H -0.222 1.222 27 H -0.221 1.221 28 C 0.062 3.938 29 C 0.040 3.960 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.130 0.870 41 H 0.153 0.847 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.136 0.864 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.054 0.946 49 H 0.042 0.958 50 H 0.048 0.952 51 H 0.006 0.994 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.003 13.187 7.335 20.586 hybrid contribution 1.236 -1.205 -1.282 2.151 sum -12.766 11.982 6.053 18.525 Atomic orbital electron populations 1.21686 0.92115 1.02198 1.03001 1.20453 0.97951 0.92757 1.01079 1.19834 0.98763 0.95289 0.93718 1.21194 1.00898 0.96161 0.97425 1.21386 0.99156 0.94312 0.99361 1.21392 1.00401 1.01084 0.92160 1.21258 0.98362 0.94244 0.99335 1.19366 1.00460 0.94628 0.93358 1.20834 0.96220 1.00145 0.95982 1.21268 0.89932 0.80329 0.80547 1.90812 1.33124 1.62825 1.56656 1.46821 1.19486 1.43287 1.22931 1.21263 0.85448 0.99854 0.95441 1.21176 0.98412 0.97146 0.99546 1.20506 0.93714 1.02529 0.96779 1.21305 1.00919 0.93489 0.95158 0.90296 1.21602 0.95012 0.96320 0.85832 1.44725 1.66341 1.05357 1.19224 1.19420 1.30681 0.89036 0.98217 0.89996 1.25706 1.01267 0.98919 1.00081 1.70351 1.43899 1.20219 1.23991 0.85102 0.76996 0.79164 0.78678 1.18457 1.22212 1.22138 1.21192 0.95248 0.82445 0.94956 1.20563 0.87751 0.91425 0.96258 0.93976 0.91459 0.92255 0.91093 0.93258 0.94155 0.86015 0.84038 0.83574 0.84252 0.87038 0.84685 0.89602 0.89080 0.86408 0.92918 0.90118 0.89688 0.94644 0.95779 0.95167 0.99379 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.72 71.98 0.70 -2.67 16 2 C -0.08 -2.98 5.38 29.85 0.16 -2.82 16 3 C -0.08 -2.54 5.13 -19.87 -0.10 -2.65 16 4 C -0.14 -4.26 9.68 22.27 0.22 -4.05 16 5 C -0.12 -3.26 10.05 22.27 0.22 -3.03 16 6 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 7 C -0.11 -3.04 9.68 22.27 0.22 -2.82 16 8 C -0.08 -2.37 4.37 -19.87 -0.09 -2.46 16 9 C -0.09 -2.48 3.51 29.10 0.10 -2.38 16 10 C 0.49 18.46 5.95 87.66 0.52 18.98 16 11 O -0.56 -28.03 13.35 -3.03 -0.04 -28.07 16 12 N -0.59 -19.84 3.09 -811.17 -2.51 -22.35 16 13 C 0.10 2.10 5.70 86.30 0.49 2.59 16 14 C -0.13 -2.32 5.83 29.60 0.17 -2.15 16 15 C -0.10 -2.11 5.17 29.30 0.15 -1.96 16 16 C -0.09 -3.01 3.05 -11.41 -0.03 -3.04 16 17 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 18 C 0.14 5.74 6.65 86.70 0.58 6.32 16 19 N -0.63 -34.71 3.39 -696.52 -2.36 -37.07 16 20 C -0.24 -14.60 10.26 84.04 0.86 -13.74 16 21 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 22 C -0.07 -4.06 5.48 84.86 0.47 -3.59 16 23 N -0.94 -62.16 10.26 21.65 0.22 -61.94 16 24 Si 0.97 49.04 29.55 68.60 2.03 51.07 16 25 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 27 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 28 C 0.19 10.38 4.13 86.54 0.36 10.74 16 29 C 0.15 5.98 3.09 45.38 0.14 6.12 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.52 6.79 -2.39 -0.02 1.50 16 34 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16 35 H 0.04 1.71 6.40 -2.38 -0.02 1.70 16 36 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 38 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.11 2.70 4.88 -2.39 -0.01 2.69 16 41 H 0.14 2.41 7.82 -2.39 -0.02 2.39 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.55 6.07 -2.38 -0.01 1.54 16 44 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.18 6.99 -2.39 -0.02 1.16 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 48 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.02 0.98 6.69 -2.39 -0.02 0.97 16 50 H 0.24 15.70 8.31 -92.70 -0.77 14.93 16 51 H -0.01 -0.79 7.37 -2.38 -0.02 -0.81 16 52 H 0.05 2.83 4.70 -2.39 -0.01 2.82 16 Total: -1.00 -85.96 391.25 3.60 -82.36 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.90 Total: 21.67 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.36 Total: -5.67 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -4.65 Total: -121.36 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.04 Total: -28.07 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.07 kcal Total: -85.96 3.60 -82.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050074570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.397 kcal (2) G-P(sol) polarization free energy of solvation -85.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds