Wall clock time and date at job start Wed Apr 1 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46710 * 2 1 4 4 C 1.38254 * 120.00296 * 269.93309 * 3 2 1 5 5 C 1.38204 * 119.99866 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00476 * 0.04292 * 5 4 3 7 7 C 1.38207 * 119.99568 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99822 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47148 * 269.97512 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46800 * 119.51777 * 359.73432 * 11 9 8 13 13 C 1.53436 * 107.31588 * 232.83300 * 12 11 9 14 14 C 1.52729 * 107.91105 * 300.85366 * 13 12 11 15 15 C 1.52959 * 110.88015 * 64.54817 * 14 13 12 16 16 H 1.08995 * 111.91974 * 70.37795 * 15 14 13 17 17 C 1.55028 * 107.60091 * 194.03207 * 15 14 13 18 18 N 1.47093 * 107.12938 * 92.89647 * 17 15 14 19 19 C 1.36944 * 125.64851 * 180.17457 * 18 17 15 20 20 H 1.08001 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00029 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00086 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99873 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47000 * 90.00193 * 23 21 19 25 25 H 1.48498 * 109.47228 * 210.00113 * 23 21 19 26 26 H 1.48501 * 109.47077 * 330.00174 * 23 21 19 27 27 C 1.47679 * 108.70602 * 0.16377 * 18 17 15 28 28 C 1.45019 * 119.52454 * 179.97438 * 11 9 8 29 29 H 1.09001 * 109.86184 * 12.54195 * 28 11 9 30 30 C 1.38220 * 119.99654 * 90.00415 * 3 2 1 31 31 H 1.08997 * 109.47031 * 299.99687 * 1 2 3 32 32 H 1.08996 * 109.47256 * 60.00117 * 1 2 3 33 33 H 1.09002 * 109.46695 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47031 * 240.00313 * 2 1 3 35 35 H 1.08996 * 109.47256 * 119.99883 * 2 1 3 36 36 H 1.08005 * 119.99947 * 0.06250 * 4 3 2 37 37 H 1.07999 * 119.99768 * 180.02562 * 5 4 3 38 38 H 1.07991 * 120.00010 * 180.02562 * 6 5 4 39 39 H 1.08993 * 109.47341 * 29.98219 * 8 7 6 40 40 H 1.09001 * 109.46864 * 149.98303 * 8 7 6 41 41 H 1.08999 * 109.84414 * 351.50973 * 12 11 9 42 42 H 1.08997 * 109.84365 * 112.48952 * 12 11 9 43 43 H 1.09001 * 109.33436 * 181.61879 * 13 12 11 44 44 H 1.09000 * 110.52956 * 60.78580 * 13 12 11 45 45 H 1.09000 * 109.19559 * 304.18662 * 14 13 12 46 46 H 1.09001 * 109.15994 * 184.88251 * 14 13 12 47 47 H 1.09000 * 109.90699 * 212.27680 * 17 15 14 48 48 H 1.09004 * 109.90430 * 333.33881 * 17 15 14 49 49 H 0.96995 * 119.99801 * 179.97438 * 22 21 19 50 50 H 1.08999 * 110.44554 * 264.74056 * 27 18 17 51 51 H 1.09000 * 110.44895 * 142.20161 * 27 18 17 52 52 H 1.08000 * 119.99660 * 0.27001 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2640 2.0723 -1.1973 5 6 2.7241 3.3755 -1.1972 6 6 2.9535 4.0276 0.0002 7 6 2.7232 3.3760 1.1971 8 6 2.9738 4.0866 2.5022 9 6 4.3969 3.8499 2.9378 10 8 5.1352 3.1715 2.2554 11 7 4.8497 4.3930 4.0852 12 6 3.9492 5.2182 4.8996 13 6 4.6600 6.5535 5.1559 14 6 5.9725 6.2560 5.8781 15 6 6.9147 5.4468 4.9853 16 1 7.3038 6.0421 4.1593 17 6 8.0456 4.8851 5.8847 18 7 7.6276 3.5434 6.3191 19 6 8.3462 2.7077 7.1318 20 1 9.3084 3.0188 7.5109 21 6 7.8378 1.4606 7.4685 22 7 6.6653 1.0812 7.0062 23 14 8.8177 0.3210 8.5777 24 1 8.4541 0.5762 9.9947 25 1 8.5090 -1.0903 8.2340 26 1 10.2689 0.5711 8.3862 27 6 6.3045 3.2469 5.7338 28 6 6.2209 4.1581 4.4948 29 1 6.7849 3.7246 3.6690 30 6 2.2627 2.0724 1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0841 1.5631 -2.1327 37 1 2.9047 3.8844 -2.1325 38 1 3.3126 5.0461 0.0002 39 1 2.8067 5.1557 2.3718 40 1 2.2928 3.7023 3.2616 41 1 3.0229 5.4026 4.3554 42 1 3.7322 4.7116 5.8400 43 1 4.0299 7.1831 5.7842 44 1 4.8663 7.0635 4.2149 45 1 5.7620 5.6883 6.7845 46 1 6.4536 7.1961 6.1477 47 1 8.9735 4.8191 5.3166 48 1 8.1864 5.5316 6.7510 49 1 6.3103 0.2097 7.2411 50 1 5.5119 3.4916 6.4409 51 1 6.2441 2.1989 5.4405 52 1 2.0869 1.5617 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050077949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:21 Heat of formation + Delta-G solvation = 7.148089 kcal Electronic energy + Delta-G solvation = -30563.587427 eV Core-core repulsion = 26720.932574 eV Total energy + Delta-G solvation = -3842.654853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.40555 -39.39182 -37.80253 -35.26861 -34.47095 -32.92666 -32.34256 -31.85159 -29.64615 -29.35181 -28.09876 -26.72114 -25.48731 -24.01060 -23.82986 -22.26051 -21.93916 -20.95214 -20.12473 -19.51533 -17.97122 -17.04012 -16.87264 -16.51234 -15.82744 -15.51918 -14.92814 -14.88440 -14.80113 -14.26801 -13.99943 -13.83442 -13.71978 -13.63598 -13.32485 -13.16113 -12.99057 -12.79517 -12.42663 -12.19141 -12.13173 -12.05318 -11.79020 -11.76273 -11.57204 -11.31000 -11.09655 -11.05807 -10.85709 -10.82295 -10.78860 -10.66565 -10.28180 -10.21830 -9.86291 -9.73336 -9.65795 -9.40765 -8.72477 -8.62703 -8.55541 -8.07996 -6.81731 -5.63508 -3.05573 1.37036 1.44981 2.97374 3.32782 3.41567 3.46441 3.48753 3.82940 4.50819 4.61368 4.67067 4.77689 4.82714 4.97931 5.05504 5.10539 5.12143 5.18077 5.22549 5.25377 5.36602 5.39495 5.43087 5.48560 5.54479 5.55800 5.60614 5.64101 5.69792 5.78571 5.79781 5.92792 5.96643 6.00714 6.09454 6.10759 6.13174 6.14078 6.24287 6.31409 6.44022 6.48104 6.60023 6.65619 6.66149 6.71043 6.93147 7.00836 7.05106 7.45667 7.63562 7.81322 7.90057 8.35731 8.57988 9.22238 9.83647 10.47732 11.40403 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.003101 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.083872 B = 9027.229611 C =10744.852597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.057 4.057 8 C -0.102 4.102 9 C 0.511 3.489 10 O -0.532 6.532 11 N -0.590 5.590 12 C 0.105 3.895 13 C -0.131 4.131 14 C -0.110 4.110 15 C -0.108 4.108 16 H 0.074 0.926 17 C 0.140 3.860 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.157 3.843 28 C 0.117 3.883 29 H 0.095 0.905 30 C -0.100 4.100 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.022 0.978 48 H 0.026 0.974 49 H 0.252 0.748 50 H 0.014 0.986 51 H 0.105 0.895 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 8.411 -12.405 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.057 4.057 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.408 6.408 11 N -0.322 5.322 12 C -0.018 4.018 13 C -0.169 4.169 14 C -0.148 4.148 15 C -0.128 4.128 16 H 0.092 0.908 17 C 0.013 3.987 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.031 3.969 28 C 0.013 3.987 29 H 0.113 0.887 30 C -0.119 4.119 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.044 0.956 49 H 0.062 0.938 50 H 0.032 0.968 51 H 0.123 0.877 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.555 7.828 -12.652 20.127 hybrid contribution 0.568 -0.431 0.770 1.049 sum -12.988 7.398 -11.882 19.094 Atomic orbital electron populations 1.21739 0.94848 1.01566 1.02067 1.20548 0.96002 0.92809 1.03015 1.19823 0.99195 0.96054 0.93083 1.20949 1.00729 0.95003 0.97294 1.21024 0.99882 0.95010 0.97721 1.20919 0.99977 0.99970 0.92016 1.19288 0.98378 0.94384 0.93678 1.20731 0.95450 1.01941 0.96077 1.20425 0.89186 0.79825 0.80760 1.90721 1.58023 1.38354 1.53692 1.47433 1.12620 1.50223 1.21946 1.21857 0.92431 0.91157 0.96390 1.21877 0.97605 0.96473 1.00981 1.21487 0.94665 0.99560 0.99075 1.22429 0.96685 0.96096 0.97592 0.90768 1.21501 0.94386 0.87912 0.94853 1.44435 1.18777 1.12814 1.56831 1.19067 1.00053 0.95277 1.20768 0.90380 1.24796 0.97138 0.97782 1.00857 1.69814 1.18005 1.20652 1.48365 0.86076 0.79118 0.80252 0.80070 1.21675 1.21652 1.20677 1.21952 0.86335 0.99738 0.88842 1.22017 0.80354 0.96022 1.00349 0.88690 1.20879 0.99361 0.93899 0.97717 0.92524 0.92734 0.92510 0.91144 0.90838 0.86491 0.86312 0.86476 0.88277 0.88085 0.90247 0.90592 0.91151 0.91698 0.90889 0.92407 0.95968 0.95575 0.93752 0.96799 0.87680 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.09 -0.86 6.07 -27.88 -0.17 -1.03 16 3 C -0.08 -0.99 5.13 -104.62 -0.54 -1.53 16 4 C -0.12 -1.39 9.70 -39.59 -0.38 -1.77 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.11 -1.37 9.70 -39.58 -0.38 -1.76 16 7 C -0.06 -0.76 4.37 -104.63 -0.46 -1.21 16 8 C -0.10 -1.24 4.14 -29.03 -0.12 -1.36 16 9 C 0.51 8.67 7.65 -10.99 -0.08 8.59 16 10 O -0.53 -11.42 15.35 5.55 0.09 -11.34 16 11 N -0.59 -9.85 2.73 -165.25 -0.45 -10.30 16 12 C 0.10 1.33 6.06 -3.65 -0.02 1.31 16 13 C -0.13 -1.54 6.12 -26.64 -0.16 -1.70 16 14 C -0.11 -1.64 4.67 -26.89 -0.13 -1.77 16 15 C -0.11 -1.91 3.56 -88.85 -0.32 -2.23 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 17 C 0.14 2.95 6.63 -2.65 -0.02 2.93 16 18 N -0.60 -15.59 3.40 -169.91 -0.58 -16.16 16 19 C -0.22 -6.30 10.28 -15.06 -0.15 -6.45 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.30 10.10 55.49 0.56 -26.74 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.16 3.88 5.06 -2.86 -0.01 3.86 16 28 C 0.12 2.37 3.04 -67.47 -0.21 2.17 16 29 H 0.10 2.20 6.95 -51.93 -0.36 1.84 16 30 C -0.10 -1.34 9.36 -39.58 -0.37 -1.71 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.10 0.93 7.54 -51.93 -0.39 0.54 16 40 H 0.10 1.05 7.89 -51.93 -0.41 0.64 16 41 H 0.08 0.74 5.81 -51.93 -0.30 0.44 16 42 H 0.08 1.05 7.62 -51.93 -0.40 0.65 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.27 7.25 -51.93 -0.38 0.89 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.03 0.54 7.77 -51.93 -0.40 0.13 16 49 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.01 0.36 6.96 -51.93 -0.36 0.00 16 51 H 0.11 3.06 5.93 -51.93 -0.31 2.75 16 52 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -33.61 402.82 -11.75 -45.37 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.77 Total: 2.38 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.65 Total: -6.64 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.47 Total: -53.21 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.61 -11.75 -45.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050077949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.514 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds