Wall clock time and date at job start Wed Apr 1 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46710 * 2 1 4 4 C 1.38254 * 120.00296 * 269.93309 * 3 2 1 5 5 C 1.38204 * 119.99866 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00476 * 0.04292 * 5 4 3 7 7 C 1.38207 * 119.99568 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99822 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47148 * 269.97512 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46800 * 119.51777 * 359.73432 * 11 9 8 13 13 C 1.53436 * 107.31588 * 232.83300 * 12 11 9 14 14 C 1.52729 * 107.91105 * 300.85366 * 13 12 11 15 15 C 1.52959 * 110.88015 * 64.54817 * 14 13 12 16 16 H 1.08995 * 111.91974 * 70.37795 * 15 14 13 17 17 C 1.55028 * 107.60091 * 194.03207 * 15 14 13 18 18 N 1.47093 * 107.12938 * 92.89647 * 17 15 14 19 19 C 1.36944 * 125.64851 * 180.17457 * 18 17 15 20 20 H 1.08001 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00029 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00086 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99873 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47000 * 90.00193 * 23 21 19 25 25 H 1.48498 * 109.47228 * 210.00113 * 23 21 19 26 26 H 1.48501 * 109.47077 * 330.00174 * 23 21 19 27 27 C 1.47679 * 108.70602 * 0.16377 * 18 17 15 28 28 C 1.45019 * 119.52454 * 179.97438 * 11 9 8 29 29 H 1.09001 * 109.86184 * 12.54195 * 28 11 9 30 30 C 1.38220 * 119.99654 * 90.00415 * 3 2 1 31 31 H 1.08997 * 109.47031 * 299.99687 * 1 2 3 32 32 H 1.08996 * 109.47256 * 60.00117 * 1 2 3 33 33 H 1.09002 * 109.46695 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47031 * 240.00313 * 2 1 3 35 35 H 1.08996 * 109.47256 * 119.99883 * 2 1 3 36 36 H 1.08005 * 119.99947 * 0.06250 * 4 3 2 37 37 H 1.07999 * 119.99768 * 180.02562 * 5 4 3 38 38 H 1.07991 * 120.00010 * 180.02562 * 6 5 4 39 39 H 1.08993 * 109.47341 * 29.98219 * 8 7 6 40 40 H 1.09001 * 109.46864 * 149.98303 * 8 7 6 41 41 H 1.08999 * 109.84414 * 351.50973 * 12 11 9 42 42 H 1.08997 * 109.84365 * 112.48952 * 12 11 9 43 43 H 1.09001 * 109.33436 * 181.61879 * 13 12 11 44 44 H 1.09000 * 110.52956 * 60.78580 * 13 12 11 45 45 H 1.09000 * 109.19559 * 304.18662 * 14 13 12 46 46 H 1.09001 * 109.15994 * 184.88251 * 14 13 12 47 47 H 1.09000 * 109.90699 * 212.27680 * 17 15 14 48 48 H 1.09004 * 109.90430 * 333.33881 * 17 15 14 49 49 H 0.96995 * 119.99801 * 179.97438 * 22 21 19 50 50 H 1.08999 * 110.44554 * 264.74056 * 27 18 17 51 51 H 1.09000 * 110.44895 * 142.20161 * 27 18 17 52 52 H 1.08000 * 119.99660 * 0.27001 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2640 2.0723 -1.1973 5 6 2.7241 3.3755 -1.1972 6 6 2.9535 4.0276 0.0002 7 6 2.7232 3.3760 1.1971 8 6 2.9738 4.0866 2.5022 9 6 4.3969 3.8499 2.9378 10 8 5.1352 3.1715 2.2554 11 7 4.8497 4.3930 4.0852 12 6 3.9492 5.2182 4.8996 13 6 4.6600 6.5535 5.1559 14 6 5.9725 6.2560 5.8781 15 6 6.9147 5.4468 4.9853 16 1 7.3038 6.0421 4.1593 17 6 8.0456 4.8851 5.8847 18 7 7.6276 3.5434 6.3191 19 6 8.3462 2.7077 7.1318 20 1 9.3084 3.0188 7.5109 21 6 7.8378 1.4606 7.4685 22 7 6.6653 1.0812 7.0062 23 14 8.8177 0.3210 8.5777 24 1 8.4541 0.5762 9.9947 25 1 8.5090 -1.0903 8.2340 26 1 10.2689 0.5711 8.3862 27 6 6.3045 3.2469 5.7338 28 6 6.2209 4.1581 4.4948 29 1 6.7849 3.7246 3.6690 30 6 2.2627 2.0724 1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0841 1.5631 -2.1327 37 1 2.9047 3.8844 -2.1325 38 1 3.3126 5.0461 0.0002 39 1 2.8067 5.1557 2.3718 40 1 2.2928 3.7023 3.2616 41 1 3.0229 5.4026 4.3554 42 1 3.7322 4.7116 5.8400 43 1 4.0299 7.1831 5.7842 44 1 4.8663 7.0635 4.2149 45 1 5.7620 5.6883 6.7845 46 1 6.4536 7.1961 6.1477 47 1 8.9735 4.8191 5.3166 48 1 8.1864 5.5316 6.7510 49 1 6.3103 0.2097 7.2411 50 1 5.5119 3.4916 6.4409 51 1 6.2441 2.1989 5.4405 52 1 2.0869 1.5617 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050077949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:19 Heat of formation + Delta-G solvation = -10.972367 kcal Electronic energy + Delta-G solvation = -30564.373189 eV Core-core repulsion = 26720.932574 eV Total energy + Delta-G solvation = -3843.440615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.73786 -40.42926 -39.23503 -36.85070 -35.34310 -34.57683 -33.43918 -33.29962 -31.21387 -30.39654 -29.44287 -28.14958 -27.14186 -25.43905 -24.79252 -23.46544 -23.02380 -22.22137 -21.70784 -20.71054 -19.31603 -18.93732 -18.30942 -17.46051 -17.05187 -16.81712 -16.59031 -16.06266 -15.93667 -15.84909 -15.17678 -15.11493 -14.79645 -14.68470 -14.53697 -14.41375 -14.09013 -13.95646 -13.82927 -13.77483 -13.51338 -13.13550 -13.10091 -12.94771 -12.83262 -12.76697 -12.59655 -12.37631 -12.16764 -12.10817 -12.07577 -11.78844 -11.70692 -11.63288 -11.59464 -11.45762 -11.16518 -10.79902 -10.75981 -9.66317 -9.54115 -9.46943 -8.90797 -7.80780 -5.26123 0.44490 0.53193 1.42506 1.45457 1.54120 1.66703 2.06114 2.47166 2.88072 3.29368 3.58642 3.65544 3.71245 3.80609 3.86598 3.99418 3.99973 4.03476 4.10970 4.21101 4.23835 4.28409 4.38870 4.44848 4.51260 4.55343 4.56359 4.59956 4.61509 4.70542 4.73330 4.79565 4.85154 4.93103 4.95328 5.02752 5.08216 5.11060 5.18376 5.21394 5.23306 5.30267 5.37588 5.39567 5.47951 5.54166 5.58973 5.65690 5.68759 5.75197 5.80663 6.16620 6.22986 6.52444 7.04403 7.25826 7.73000 8.36898 9.20877 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.003101 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.083872 B = 9027.229611 C =10744.852597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.075 4.075 8 C -0.090 4.090 9 C 0.504 3.496 10 O -0.587 6.587 11 N -0.591 5.591 12 C 0.096 3.904 13 C -0.121 4.121 14 C -0.107 4.107 15 C -0.093 4.093 16 H 0.099 0.901 17 C 0.132 3.868 18 N -0.625 5.625 19 C -0.240 4.240 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.982 3.018 24 H -0.282 1.282 25 H -0.296 1.296 26 H -0.269 1.269 27 C 0.172 3.828 28 C 0.131 3.869 29 H 0.058 0.942 30 C -0.126 4.126 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.019 0.981 48 H 0.038 0.962 49 H 0.245 0.755 50 H -0.002 1.002 51 H 0.053 0.947 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.232 11.046 -13.233 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.075 4.075 8 C -0.129 4.129 9 C 0.294 3.706 10 O -0.467 6.467 11 N -0.322 5.322 12 C -0.025 4.025 13 C -0.159 4.159 14 C -0.145 4.145 15 C -0.112 4.112 16 H 0.117 0.883 17 C 0.007 3.993 18 N -0.352 5.352 19 C -0.368 4.368 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.193 1.193 27 C 0.046 3.954 28 C 0.025 3.975 29 H 0.076 0.924 30 C -0.144 4.144 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.037 0.963 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.016 0.984 51 H 0.071 0.929 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.844 10.520 -13.465 22.634 hybrid contribution 1.005 -1.280 1.002 1.911 sum -13.839 9.240 -12.463 20.790 Atomic orbital electron populations 1.21697 0.93423 1.02408 1.02132 1.20590 0.97237 0.91734 1.02911 1.20119 0.99067 0.96975 0.93145 1.21276 1.00225 0.95304 0.97850 1.21401 0.98983 0.95129 0.98583 1.21217 0.99932 1.00913 0.92043 1.19495 0.98858 0.94556 0.94596 1.20767 0.91739 1.04394 0.96039 1.21365 0.90746 0.78385 0.80072 1.90693 1.59898 1.40666 1.55454 1.47545 1.11624 1.50593 1.22422 1.22218 0.93551 0.90935 0.95799 1.21875 0.95858 0.96078 1.02040 1.21463 0.96144 0.99455 0.97437 1.22404 0.95688 0.95153 0.97977 0.88316 1.21732 0.95682 0.86068 0.95804 1.44728 1.19053 1.14648 1.56725 1.19479 1.00509 0.95979 1.20878 0.89834 1.25692 0.98301 0.99423 1.02699 1.70117 1.19601 1.20550 1.49629 0.85022 0.78235 0.77528 0.78214 1.20883 1.22239 1.19342 1.21533 0.85743 0.97904 0.90259 1.21423 0.82879 0.96464 0.96721 0.92418 1.21044 1.00728 0.94578 0.98069 0.93054 0.92027 0.91277 0.90153 0.92018 0.84318 0.83829 0.84844 0.84318 0.86244 0.85785 0.92203 0.87681 0.89890 0.93958 0.89889 0.96281 0.94435 0.94545 0.98440 0.92875 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 71.98 0.71 -1.49 16 2 C -0.09 -1.74 6.07 29.85 0.18 -1.56 16 3 C -0.09 -2.25 5.13 -19.86 -0.10 -2.35 16 4 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 5 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 6 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 7 C -0.07 -1.92 4.37 -19.87 -0.09 -2.01 16 8 C -0.09 -2.02 4.14 29.10 0.12 -1.90 16 9 C 0.50 17.10 7.65 87.66 0.67 17.77 16 10 O -0.59 -26.30 15.35 -3.05 -0.05 -26.35 16 11 N -0.59 -19.52 2.73 -795.12 -2.17 -21.69 16 12 C 0.10 2.20 6.06 86.47 0.52 2.73 16 13 C -0.12 -2.32 6.12 30.65 0.19 -2.14 16 14 C -0.11 -2.93 4.67 30.49 0.14 -2.79 16 15 C -0.09 -3.19 3.56 -9.65 -0.03 -3.22 16 16 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 17 C 0.13 5.63 6.63 86.96 0.58 6.20 16 18 N -0.62 -33.68 3.40 -691.48 -2.35 -36.03 16 19 C -0.24 -13.95 10.28 84.03 0.86 -13.09 16 20 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 22 N -0.95 -59.41 10.10 21.65 0.22 -59.19 16 23 Si 0.98 47.33 29.55 68.60 2.03 49.35 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 27 C 0.17 9.00 5.06 86.50 0.44 9.43 16 28 C 0.13 5.49 3.04 46.08 0.14 5.63 16 29 H 0.06 2.84 6.95 -2.39 -0.02 2.82 16 30 C -0.13 -3.43 9.36 22.27 0.21 -3.22 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.40 8.08 -2.39 -0.02 1.39 16 35 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.14 1.98 7.54 -2.39 -0.02 1.96 16 40 H 0.12 2.23 7.89 -2.39 -0.02 2.21 16 41 H 0.12 1.75 5.81 -2.39 -0.01 1.73 16 42 H 0.06 1.59 7.62 -2.39 -0.02 1.57 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.04 1.43 7.25 -2.39 -0.02 1.41 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.04 1.52 7.77 -2.39 -0.02 1.50 16 49 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 50 H 0.00 -0.12 6.96 -2.39 -0.02 -0.14 16 51 H 0.05 3.34 5.93 -2.39 -0.01 3.33 16 52 H 0.11 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -80.20 402.82 4.23 -75.98 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.89 Total: 21.11 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.66 Total: -3.18 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -4.30 Total: -116.91 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -80.20 4.23 -75.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050077949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.004 kcal (2) G-P(sol) polarization free energy of solvation -80.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds