Wall clock time and date at job start Wed Apr 1 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.99771 * 2 1 4 4 C 1.38217 * 119.99742 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00072 * 359.75673 * 4 3 2 6 6 C 1.50701 * 119.99916 * 180.27034 * 5 4 3 7 7 C 1.38214 * 119.99776 * 0.50125 * 5 4 3 8 8 C 1.50702 * 120.00026 * 179.76505 * 7 5 4 9 9 C 1.50700 * 109.46558 * 84.72465 * 8 7 5 10 10 O 1.21278 * 120.00568 * 359.72900 * 9 8 7 11 11 N 1.34784 * 119.99727 * 180.02562 * 9 8 7 12 12 C 1.44506 * 116.63056 * 353.96444 * 11 9 8 13 13 C 1.51631 * 112.65448 * 154.60200 * 12 11 9 14 14 C 1.51325 * 111.97728 * 42.75884 * 13 12 11 15 15 C 1.50703 * 113.54665 * 304.60962 * 14 13 12 16 16 H 1.08997 * 109.33826 * 169.07127 * 15 14 13 17 17 C 1.54186 * 110.50980 * 289.39545 * 15 14 13 18 18 N 1.46928 * 106.26388 * 151.09793 * 17 15 14 19 19 C 1.36930 * 125.37592 * 162.11474 * 18 17 15 20 20 H 1.07998 * 120.00253 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00010 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99947 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00043 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46963 * 89.99667 * 23 21 19 25 25 H 1.48498 * 109.47359 * 209.99647 * 23 21 19 26 26 H 1.48501 * 109.47111 * 330.00222 * 23 21 19 27 27 C 1.46813 * 109.24636 * 342.14862 * 18 17 15 28 28 C 1.44100 * 116.62953 * 173.71201 * 11 9 8 29 29 H 1.08994 * 109.11218 * 73.86622 * 28 11 9 30 30 C 1.38207 * 120.00075 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46834 * 270.02020 * 1 2 3 32 32 H 1.08999 * 109.47173 * 30.01684 * 1 2 3 33 33 H 1.09003 * 109.47062 * 150.01881 * 1 2 3 34 34 H 1.07995 * 120.00230 * 0.02562 * 3 2 1 35 35 H 1.07995 * 119.99762 * 180.02562 * 4 3 2 36 36 H 1.09004 * 109.46984 * 270.22979 * 6 5 4 37 37 H 1.08993 * 109.47126 * 30.23318 * 6 5 4 38 38 H 1.09003 * 109.46567 * 150.23418 * 6 5 4 39 39 H 1.09001 * 109.46904 * 324.73415 * 8 7 5 40 40 H 1.08993 * 109.47300 * 204.72512 * 8 7 5 41 41 H 1.09003 * 108.84526 * 275.42057 * 12 11 9 42 42 H 1.09003 * 108.84990 * 33.77972 * 12 11 9 43 43 H 1.09002 * 108.97548 * 163.40105 * 13 12 11 44 44 H 1.08993 * 108.97727 * 282.19889 * 13 12 11 45 45 H 1.09000 * 108.66928 * 65.66621 * 14 13 12 46 46 H 1.09005 * 108.66294 * 183.69616 * 14 13 12 47 47 H 1.09002 * 110.09346 * 270.29735 * 17 15 14 48 48 H 1.08995 * 110.09822 * 31.83555 * 17 15 14 49 49 H 0.97003 * 119.99995 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.84078 * 120.40136 * 27 18 17 51 51 H 1.09000 * 109.84129 * 241.31022 * 27 18 17 52 52 H 1.07999 * 120.00005 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0062 6 6 5.7787 0.0001 0.0129 7 6 3.5807 -1.1969 0.0008 8 6 4.3341 -2.5020 0.0015 9 6 4.6921 -2.8744 1.4173 10 8 4.3717 -2.1488 2.3347 11 7 5.3737 -4.0109 1.6633 12 6 5.6067 -4.8836 0.5353 13 6 6.8296 -5.7611 0.7186 14 6 6.9114 -6.3335 2.1170 15 6 6.8784 -5.2855 3.1995 16 1 6.7452 -5.7698 4.1668 17 6 8.1922 -4.4787 3.2106 18 7 7.8504 -3.1427 3.7175 19 6 8.7434 -2.2301 4.2123 20 1 9.7955 -2.4709 4.2521 21 6 8.2964 -0.9960 4.6638 22 7 7.0142 -0.7027 4.6158 23 14 9.5146 0.2487 5.3395 24 1 10.0070 1.1096 4.2342 25 1 8.8452 1.0913 6.3627 26 1 10.6600 -0.4655 5.9584 27 6 6.4002 -2.9409 3.6104 28 6 5.7994 -4.2272 3.0229 29 1 4.9352 -4.5007 3.6282 30 6 2.1980 -1.1969 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8902 -0.5136 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 6.1466 0.0021 -1.0132 37 1 6.1397 0.8890 0.5301 38 1 6.1397 -0.8909 0.5266 39 1 5.2451 -2.3960 -0.5876 40 1 3.7094 -3.2825 -0.4326 41 1 4.7334 -5.5211 0.3970 42 1 5.7408 -4.2750 -0.3590 43 1 6.7881 -6.5811 0.0017 44 1 7.7236 -5.1678 0.5268 45 1 6.0733 -7.0145 2.2649 46 1 7.8392 -6.8983 2.2090 47 1 8.9184 -4.9548 3.8695 48 1 8.5952 -4.4053 2.2006 49 1 6.7018 0.1596 4.9316 50 1 5.9793 -2.7503 4.5977 51 1 6.1916 -2.0988 2.9506 52 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050129376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:31 Heat of formation + Delta-G solvation = 18.845069 kcal Electronic energy + Delta-G solvation = -31844.064118 eV Core-core repulsion = 28001.916484 eV Total energy + Delta-G solvation = -3842.147634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -40.64317 -39.35275 -37.51695 -35.39829 -33.99091 -33.12759 -32.27623 -31.85273 -29.66061 -29.07072 -28.11740 -26.61188 -25.58723 -24.58068 -23.93918 -22.35005 -21.86855 -20.94894 -19.98947 -19.02562 -17.79797 -17.02026 -16.42228 -15.94433 -15.74976 -15.48548 -15.14757 -14.71090 -14.38703 -14.24492 -13.98576 -13.84191 -13.66146 -13.37010 -13.08751 -12.94378 -12.82049 -12.53772 -12.52394 -12.44154 -12.18648 -12.02617 -11.67509 -11.44230 -11.30765 -11.27051 -11.01461 -10.93407 -10.77037 -10.70741 -10.64879 -10.58382 -10.25842 -10.15199 -9.96426 -9.85075 -9.57179 -9.01435 -8.52412 -8.41446 -8.11900 -7.88350 -6.65300 -5.53405 -2.90286 1.57105 1.64223 3.17904 3.46092 3.50435 3.51600 3.53663 3.98699 4.59648 4.79221 4.82902 4.93458 4.96428 5.01739 5.07624 5.17749 5.22192 5.29386 5.34415 5.36352 5.45280 5.55784 5.60390 5.62269 5.64022 5.70928 5.75927 5.79980 5.85151 5.88325 5.94801 5.96193 5.98293 6.02027 6.11437 6.23033 6.25242 6.26752 6.34983 6.50521 6.57949 6.64290 6.67751 6.76329 6.77510 6.84406 6.94203 7.20431 7.27294 7.67563 7.85583 7.91760 8.15346 8.44352 8.81612 9.36169 9.97217 10.62117 11.54406 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.004692 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.105428 B = 5965.622952 C = 8157.742316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.062 4.062 6 C -0.116 4.116 7 C -0.059 4.059 8 C -0.103 4.103 9 C 0.498 3.502 10 O -0.492 6.492 11 N -0.593 5.593 12 C 0.116 3.884 13 C -0.128 4.128 14 C -0.101 4.101 15 C -0.102 4.102 16 H 0.078 0.922 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.236 4.236 20 H 0.074 0.926 21 C -0.004 4.004 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.171 3.829 28 C 0.133 3.867 29 H 0.054 0.946 30 C -0.105 4.105 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.030 0.970 48 H 0.014 0.986 49 H 0.252 0.748 50 H 0.050 0.950 51 H 0.079 0.921 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 -6.626 -14.178 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.062 4.062 6 C -0.173 4.173 7 C -0.059 4.059 8 C -0.143 4.143 9 C 0.285 3.715 10 O -0.365 6.365 11 N -0.328 5.328 12 C -0.008 4.008 13 C -0.165 4.165 14 C -0.139 4.139 15 C -0.122 4.122 16 H 0.097 0.903 17 C 0.016 3.984 18 N -0.334 5.334 19 C -0.364 4.364 20 H 0.092 0.908 21 C -0.201 4.201 22 N -0.551 5.551 23 Si 0.735 3.265 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.046 3.954 28 C 0.029 3.971 29 H 0.072 0.928 30 C -0.123 4.123 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.049 0.951 48 H 0.032 0.968 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.096 0.904 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.043 -6.058 -13.537 17.370 hybrid contribution 0.739 0.593 0.474 1.060 sum -8.303 -5.465 -13.063 16.415 Atomic orbital electron populations 1.20730 0.91605 1.02146 1.02119 1.19744 0.95666 0.93165 1.01338 1.20913 0.94134 0.97191 1.01521 1.20956 0.94074 0.97431 1.00984 1.19724 0.96117 0.92459 0.97864 1.20815 0.91025 1.04237 1.01189 1.19135 0.93193 0.93305 1.00297 1.20780 1.01412 0.95935 0.96132 1.20408 0.79175 0.81166 0.90783 1.90835 1.50695 1.49504 1.45440 1.46742 1.55986 1.21480 1.08622 1.20771 0.97835 0.93234 0.88918 1.21114 0.98512 0.99241 0.97673 1.20476 1.01850 0.97613 0.93963 1.21310 0.96965 0.95164 0.98767 0.90349 1.21364 0.93523 0.87061 0.96442 1.44387 1.03674 1.11784 1.73537 1.18950 0.88850 0.93847 1.34755 0.90779 1.24821 0.96060 0.97728 1.01493 1.70018 1.11584 1.22155 1.51383 0.86240 0.80099 0.81673 0.78451 1.21746 1.21749 1.20829 1.21657 0.82040 0.91825 0.99857 1.21027 0.96203 0.99065 0.80819 0.92754 1.20749 0.93216 0.97327 1.00992 0.91419 0.91944 0.91921 0.86570 0.86299 0.91771 0.91273 0.90922 0.88275 0.88843 0.93032 0.91100 0.90932 0.91171 0.92558 0.91621 0.95139 0.96810 0.93775 0.93219 0.90351 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.10 -1.34 5.88 -104.62 -0.62 -1.96 16 3 C -0.12 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.12 -1.76 9.70 -39.58 -0.38 -2.15 16 5 C -0.06 -1.01 5.88 -104.62 -0.62 -1.63 16 6 C -0.12 -1.91 9.22 36.01 0.33 -1.58 16 7 C -0.06 -0.92 4.37 -104.62 -0.46 -1.38 16 8 C -0.10 -1.45 3.49 -29.03 -0.10 -1.55 16 9 C 0.50 9.25 5.97 -10.98 -0.07 9.18 16 10 O -0.49 -11.61 13.35 5.56 0.07 -11.53 16 11 N -0.59 -10.19 3.09 -170.33 -0.53 -10.71 16 12 C 0.12 1.43 5.70 -5.80 -0.03 1.40 16 13 C -0.13 -1.49 5.83 -28.27 -0.16 -1.65 16 14 C -0.10 -1.31 5.17 -28.73 -0.15 -1.45 16 15 C -0.10 -1.79 3.05 -91.58 -0.28 -2.07 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.14 3.00 6.65 -3.19 -0.02 2.98 16 18 N -0.61 -16.06 3.39 -171.51 -0.58 -16.64 16 19 C -0.24 -6.80 10.25 -15.06 -0.15 -6.95 16 20 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 21 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 22 N -0.91 -28.01 10.26 55.49 0.57 -27.44 16 23 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 27 C 0.17 4.43 4.13 -3.53 -0.01 4.42 16 28 C 0.13 2.67 3.09 -69.30 -0.21 2.45 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 C -0.10 -1.51 9.34 -39.58 -0.37 -1.88 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.06 0.55 8.09 -51.93 -0.42 0.14 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 38 H 0.07 1.39 6.15 -51.93 -0.32 1.07 16 39 H 0.10 1.27 6.26 -51.93 -0.32 0.94 16 40 H 0.09 1.02 7.82 -51.93 -0.41 0.61 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.76 6.07 -51.93 -0.32 0.44 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.92 6.99 -51.93 -0.36 0.55 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 49 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 50 H 0.05 1.49 7.37 -51.93 -0.38 1.11 16 51 H 0.08 2.26 4.71 -51.93 -0.24 2.02 16 52 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -35.04 393.76 -11.56 -46.60 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.58 Total: 2.75 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.43 Total: -6.80 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.54 Total: -54.80 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.04 -11.56 -46.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050129376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.445 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds